CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29546 & Codon = A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29546C29546AnoncodingCA695695129546-29546

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29546C29546ACA695695All0.000133
noncoding29546C29546ACA292292B.1.1.70.000261
noncoding29546C29546ACA3939B.1.6210.003452
noncoding29546C29546ACA3030B.1.1.390.015291
noncoding29546C29546ACA2727B.1.10.00049
noncoding29546C29546ACA2727B.30.022425
noncoding29546C29546ACA2525C.281
noncoding29546C29546ACA2020B.1.20.000176
noncoding29546C29546ACA1717B.1.617.20.000064
noncoding29546C29546ACA1515AY.250.00009
noncoding29546C29546ACA1414B.10.000128
noncoding29546C29546ACA1010P.10.000158
noncoding29546C29546ACA99B.1.1770.000119
noncoding29546C29546ACA88AY.40.000012
noncoding29546C29546ACA88AY.440.000049
noncoding29546C29546ACA77AY.1030.000043
noncoding29546C29546ACA77AY.260.000198
noncoding29546C29546ACA77B.1.2140.025641
noncoding29546C29546ACA77B.1.2210.000497
noncoding29546C29546ACA66AY.430.000027
noncoding29546C29546ACA66AY.720.008163
noncoding29546C29546ACA66B.1.3510.000178
noncoding29546C29546ACA55B.1.1.2220.00102
noncoding29546C29546ACA44AY.80.002424
noncoding29546C29546ACA44B.1.1.280.001245
noncoding29546C29546ACA44B.1.360.000584
noncoding29546C29546ACA44B.1.438.10.000429
noncoding29546C29546ACA44P.1.140.000191
noncoding29546C29546ACA33AY.390.000074
noncoding29546C29546ACA33AY.60.000123
noncoding29546C29546ACA33AY.90.000203
noncoding29546C29546ACA33AY.9.20.00011
noncoding29546C29546ACA33B.1.1.4340.001046
noncoding29546C29546ACA33B.1.4290.000071
noncoding29546C29546ACA33C.36.30.001702
noncoding29546C29546ACA22AY.1000.000092
noncoding29546C29546ACA22AY.1210.000271
noncoding29546C29546ACA22AY.290.000032
noncoding29546C29546ACA22AY.330.000134
noncoding29546C29546ACA22AY.470.000062
noncoding29546C29546ACA22AY.750.000112
noncoding29546C29546ACA22AY.9.10.000167
noncoding29546C29546ACA22AY.910.001461
noncoding29546C29546ACA22B.1.1600.000062
noncoding29546C29546ACA22P.1.130.001797
noncoding29546C29546ACA22Q.10.000253
noncoding29546C29546ACA11A.50.001923
noncoding29546C29546ACA11AM.40.003571
noncoding29546C29546ACA11AY.1130.000142
noncoding29546C29546ACA11AY.1190.000035
noncoding29546C29546ACA11AY.1200.000037
noncoding29546C29546ACA11AY.190.00114
noncoding29546C29546ACA11AY.200.000039
noncoding29546C29546ACA11AY.240.000431
noncoding29546C29546ACA11AY.30.00001
noncoding29546C29546ACA11AY.340.000097
noncoding29546C29546ACA11AY.360.000148
noncoding29546C29546ACA11AY.4.20.000022
noncoding29546C29546ACA11AY.4.50.000107
noncoding29546C29546ACA11AY.480.000465
noncoding29546C29546ACA11AY.540.000095
noncoding29546C29546ACA11AY.690.000187
noncoding29546C29546ACA11AY.710.000475
noncoding29546C29546ACA11AY.880.000884
noncoding29546C29546ACA11AY.980.000079
noncoding29546C29546ACA11B.1.1.2410.00207
noncoding29546C29546ACA11B.1.1.270.00565
noncoding29546C29546ACA11B.1.1.2980.000862
noncoding29546C29546ACA11B.1.1.3160.000925
noncoding29546C29546ACA11B.1.1.3180.000302
noncoding29546C29546ACA11B.1.1.330.000421
noncoding29546C29546ACA11B.1.1170.0125
noncoding29546C29546ACA11B.1.1390.000733
noncoding29546C29546ACA11B.1.177.570.000281
noncoding29546C29546ACA11B.1.2340.000132
noncoding29546C29546ACA11B.1.2790.000514
noncoding29546C29546ACA11B.1.4680.005714
noncoding29546C29546ACA11B.1.5330.009615
noncoding29546C29546ACA11B.1.5580.004566
noncoding29546C29546ACA11B.1.5610.000397
noncoding29546C29546ACA11B.1.5880.00091
noncoding29546C29546ACA11B.1.5990.00365
noncoding29546C29546ACA11B.1.617.10.000129
noncoding29546C29546ACA11N.30.005814
noncoding29546C29546ACA11P.1.20.001156
noncoding29546C29546ACA11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.