CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29543 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29543G29543TnoncodingGT2828528285129543-29543

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29543G29543TGT2828528285All0.00541
noncoding29543G29543TGT67606760B.1.5250.764965
noncoding29543G29543TGT27452745AY.40.004272
noncoding29543G29543TGT21422142B.1.617.20.008066
noncoding29543G29543TGT20282028B.1.1.70.001816
noncoding29543G29543TGT17591759B.1.2430.122399
noncoding29543G29543TGT17061706B.1.2210.121182
noncoding29543G29543TGT708708B.1.1.3770.977901
noncoding29543G29543TGT635635P.10.010004
noncoding29543G29543TGT580580AY.430.00257
noncoding29543G29543TGT559559B.1.6280.19697
noncoding29543G29543TGT536536AY.30.005331
noncoding29543G29543TGT495495AY.440.003013
noncoding29543G29543TGT469469B.1.1.700.159959
noncoding29543G29543TGT444444B.1.20.00391
noncoding29543G29543TGT376376AY.1020.009969
noncoding29543G29543TGT359359B.1.5260.008438
noncoding29543G29543TGT347347AY.99.10.53882
noncoding29543G29543TGT338338AY.1030.002099
noncoding29543G29543TGT318318B.10.002913
noncoding29543G29543TGT231231B.1.1460.978814
noncoding29543G29543TGT228228B.1.1770.003002
noncoding29543G29543TGT178178AY.4.50.019134
noncoding29543G29543TGT164164AY.250.000986
noncoding29543G29543TGT148148AY.50.003056
noncoding29543G29543TGT139139B.1.2790.071392
noncoding29543G29543TGT132132AY.390.003262
noncoding29543G29543TGT130130AY.39.10.00515
noncoding29543G29543TGT124124AY.1210.016779
noncoding29543G29543TGT109109AY.420.004385
noncoding29543G29543TGT106106B.1.1600.003306
noncoding29543G29543TGT9898AY.1190.00346
noncoding29543G29543TGT9797B.1.10.00176
noncoding29543G29543TGT8282AY.610.008592
noncoding29543G29543TGT8282C.36.30.046512
noncoding29543G29543TGT7979AY.290.001246
noncoding29543G29543TGT7979B.1.2580.005257
noncoding29543G29543TGT7575AY.46.40.012338
noncoding29543G29543TGT7373AY.330.004875
noncoding29543G29543TGT7272B.1.3010.426036
noncoding29543G29543TGT6969B.1.243.21
noncoding29543G29543TGT6767B.1.3510.001992
noncoding29543G29543TGT5858B.1.4270.002929
noncoding29543G29543TGT5757AY.980.004503
noncoding29543G29543TGT5656B.1.4290.001318
noncoding29543G29543TGT5454AY.260.001529
noncoding29543G29543TGT5353AY.200.00206
noncoding29543G29543TGT4949AY.4.20.001063
noncoding29543G29543TGT4646AY.9.20.00169
noncoding29543G29543TGT4444B.1.2340.005806
noncoding29543G29543TGT4343AY.230.002999
noncoding29543G29543TGT3838B.1.360.005544
noncoding29543G29543TGT3838P.1.140.001816
noncoding29543G29543TGT3737AY.9.10.003098
noncoding29543G29543TGT3737B.1.1.4340.012896
noncoding29543G29543TGT3636AY.530.010351
noncoding29543G29543TGT3636B.1.1.540.108761
noncoding29543G29543TGT3535B.1.1.630.013503
noncoding29543G29543TGT3232B.1.1990.132231
noncoding29543G29543TGT3131AY.1000.001426
noncoding29543G29543TGT3131AY.1130.004414
noncoding29543G29543TGT3131AY.450.003772
noncoding29543G29543TGT2727AY.1170.002282
noncoding29543G29543TGT2727B.1.1.5190.001072
noncoding29543G29543TGT2525B.1.5960.002178
noncoding29543G29543TGT2424AY.60.000987
noncoding29543G29543TGT2323B.1.1.280.007158
noncoding29543G29543TGT2222AY.75.10.003967
noncoding29543G29543TGT2222AY.990.023085
noncoding29543G29543TGT2222B.1.177.50.027329
noncoding29543G29543TGT2121B.1.177.200.031866
noncoding29543G29543TGT1919AY.98.10.00092
noncoding29543G29543TGT1919B.1.1.4160.017195
noncoding29543G29543TGT1919B.1.6210.001682
noncoding29543G29543TGT1818AY.46.60.0013
noncoding29543G29543TGT1717AY.1180.001065
noncoding29543G29543TGT1717AY.470.000529
noncoding29543G29543TGT1717P.1.170.00275
noncoding29543G29543TGT1616AY.1160.004588
noncoding29543G29543TGT1616AY.1200.000595
noncoding29543G29543TGT1616AY.550.014679
noncoding29543G29543TGT1616B.1.617.10.002063
noncoding29543G29543TGT1616B.1.6190.013937
noncoding29543G29543TGT1515AY.1110.002747
noncoding29543G29543TGT1515AY.130.002415
noncoding29543G29543TGT1515AY.340.001454
noncoding29543G29543TGT1515AY.460.001561
noncoding29543G29543TGT1515B.1.1.1530.016429
noncoding29543G29543TGT1414AY.34.10.007139
noncoding29543G29543TGT1414AY.730.009315
noncoding29543G29543TGT1414AY.90.000946
noncoding29543G29543TGT1414B.1.1.10.004574
noncoding29543G29543TGT1414B.1.177.810.002651
noncoding29543G29543TGT1313AY.750.000728
noncoding29543G29543TGT1313B0.001662
noncoding29543G29543TGT1313B.1.36.290.006725
noncoding29543G29543TGT1212AY.1140.002773
noncoding29543G29543TGT1212AY.99.20.001106
noncoding29543G29543TGT1212B.1.1.330.005051
noncoding29543G29543TGT1212B.1.258.140.011765
noncoding29543G29543TGT1212B.1.3990.023211
noncoding29543G29543TGT1212B.1.6370.000877
noncoding29543G29543TGT1212C.370.001393
noncoding29543G29543TGT1111A.2.50.005489
noncoding29543G29543TGT1111AY.840.004812
noncoding29543G29543TGT1111B.1.177.690.01632
noncoding29543G29543TGT1111P.1.120.005324
noncoding29543G29543TGT1010AY.1080.011025
noncoding29543G29543TGT1010AY.360.001482
noncoding29543G29543TGT1010B.1.1.3170.004117
noncoding29543G29543TGT1010B.1.177.70.001649
noncoding29543G29543TGT1010B.1.4560.03268
noncoding29543G29543TGT1010R.10.0009
noncoding29543G29543TGT99AY.1060.003014
noncoding29543G29543TGT99AY.140.000792
noncoding29543G29543TGT99AY.5.30.003036
noncoding29543G29543TGT99AY.540.000858
noncoding29543G29543TGT99AY.740.001041
noncoding29543G29543TGT99B.1.1.3110.003223
noncoding29543G29543TGT99B.1.1.560.160714
noncoding29543G29543TGT99B.1.2400.00194
noncoding29543G29543TGT99B.1.3960.006351
noncoding29543G29543TGT99B.1.466.20.003521
noncoding29543G29543TGT99Q.30.001305
noncoding29543G29543TGT88AY.1050.005145
noncoding29543G29543TGT88AY.46.20.005083
noncoding29543G29543TGT88B.1.1.1930.888889
noncoding29543G29543TGT88B.1.177.600.001747
noncoding29543G29543TGT88P.20.001493
noncoding29543G29543TGT77AY.1010.003433
noncoding29543G29543TGT77AY.270.000453
noncoding29543G29543TGT77AY.4.40.002864
noncoding29543G29543TGT77AY.5.40.001937
noncoding29543G29543TGT77AY.600.006567
noncoding29543G29543TGT77AY.680.001916
noncoding29543G29543TGT77AY.920.002011
noncoding29543G29543TGT77B.1.1.1890.01059
noncoding29543G29543TGT77B.1.1.3260.012324
noncoding29543G29543TGT77B.1.3110.001922
noncoding29543G29543TGT77B.1.36.220.008454
noncoding29543G29543TGT77B.1.3980.020833
noncoding29543G29543TGT77B.1.5610.002779
noncoding29543G29543TGT77B.1.5950.001827
noncoding29543G29543TGT77D.20.000525
noncoding29543G29543TGT66AY.480.002791
noncoding29543G29543TGT66AY.7.10.000676
noncoding29543G29543TGT66B.1.1.2220.001224
noncoding29543G29543TGT66B.1.1.2280.018293
noncoding29543G29543TGT66B.1.1.390.003058
noncoding29543G29543TGT66B.1.258.170.000624
noncoding29543G29543TGT66B.1.5170.002562
noncoding29543G29543TGT66Q.10.000758
noncoding29543G29543TGT55AY.520.004072
noncoding29543G29543TGT55AY.70.00098
noncoding29543G29543TGT55AY.780.007704
noncoding29543G29543TGT55B.1.1.1700.006234
noncoding29543G29543TGT55B.1.1.1760.002197
noncoding29543G29543TGT55B.1.1.2650.015773
noncoding29543G29543TGT55B.1.1.3060.002192
noncoding29543G29543TGT55B.1.1.4190.037037
noncoding29543G29543TGT55B.1.1.4620.043103
noncoding29543G29543TGT55B.1.177.210.000382
noncoding29543G29543TGT55B.1.177.430.007386
noncoding29543G29543TGT55B.1.214.20.002998
noncoding29543G29543TGT55B.1.5580.022831
noncoding29543G29543TGT55C.110.053191
noncoding29543G29543TGT55Q.70.005556
noncoding29543G29543TGT44AY.1100.000451
noncoding29543G29543TGT44AY.240.001724
noncoding29543G29543TGT44AY.3.10.000341
noncoding29543G29543TGT44AY.400.003857
noncoding29543G29543TGT44AY.510.003636
noncoding29543G29543TGT44AY.710.0019
noncoding29543G29543TGT44AY.850.001709
noncoding29543G29543TGT44B.1.1.1710.014706
noncoding29543G29543TGT44B.1.1.2410.008282
noncoding29543G29543TGT44B.1.1.2980.003448
noncoding29543G29543TGT44B.1.1.3180.001207
noncoding29543G29543TGT44B.1.1.5170.027211
noncoding29543G29543TGT44B.1.110.30.002874
noncoding29543G29543TGT44B.1.177.560.00267
noncoding29543G29543TGT44B.1.3460.005242
noncoding29543G29543TGT44B.1.3770.018265
noncoding29543G29543TGT44B.1.3800.02649
noncoding29543G29543TGT44B.1.4780.047059
noncoding29543G29543TGT44B.1.5640.001704
noncoding29543G29543TGT44B.1.5750.001214
noncoding29543G29543TGT44B.1.5820.001963
noncoding29543G29543TGT44P.1.10.001271
noncoding29543G29543TGT44P.1.150.000929
noncoding29543G29543TGT44Q.80.00066
noncoding29543G29543TGT33A.210.00831
noncoding29543G29543TGT33A.23.10.002113
noncoding29543G29543TGT33AH.30.011407
noncoding29543G29543TGT33AY.10.001187
noncoding29543G29543TGT33AY.1040.005952
noncoding29543G29543TGT33AY.1070.001398
noncoding29543G29543TGT33AY.20.001068
noncoding29543G29543TGT33AY.23.10.001252
noncoding29543G29543TGT33AY.29.10.000662
noncoding29543G29543TGT33AY.320.001597
noncoding29543G29543TGT33AY.4.2.10.000447
noncoding29543G29543TGT33AY.410.000882
noncoding29543G29543TGT33AY.640.001786
noncoding29543G29543TGT33AY.770.003382
noncoding29543G29543TGT33AY.80.001818
noncoding29543G29543TGT33AY.830.005172
noncoding29543G29543TGT33AY.950.002283
noncoding29543G29543TGT33B.1.1.2140.000166
noncoding29543G29543TGT33B.1.1.2160.002671
noncoding29543G29543TGT33B.1.1.250.001706
noncoding29543G29543TGT33B.1.1.4320.003797
noncoding29543G29543TGT33B.1.1.500.002037
noncoding29543G29543TGT33B.1.1.5260.010638
noncoding29543G29543TGT33B.1.177.320.004049
noncoding29543G29543TGT33B.1.177.730.001699
noncoding29543G29543TGT33B.1.177.820.001432
noncoding29543G29543TGT33B.1.177.860.00055
noncoding29543G29543TGT33B.1.36.10.003421
noncoding29543G29543TGT33B.1.36.310.005254
noncoding29543G29543TGT33B.1.390.011719
noncoding29543G29543TGT33B.1.4650.011407
noncoding29543G29543TGT33B.1.4690.01083
noncoding29543G29543TGT33B.1.4990.003151
noncoding29543G29543TGT33C.360.002732
noncoding29543G29543TGT33P.1.70.000958
noncoding29543G29543TGT33P.70.0131
noncoding29543G29543TGT22A.10.000564
noncoding29543G29543TGT22A.230.021053
noncoding29543G29543TGT22A.280.005291
noncoding29543G29543TGT22AP.10.003003
noncoding29543G29543TGT22AY.1090.001479
noncoding29543G29543TGT22AY.120.10.000642
noncoding29543G29543TGT22AY.160.000759
noncoding29543G29543TGT22AY.350.000466
noncoding29543G29543TGT22AY.46.10.002053
noncoding29543G29543TGT22AY.560.00321
noncoding29543G29543TGT22AY.580.001815
noncoding29543G29543TGT22AY.590.001059
noncoding29543G29543TGT22AY.650.001066
noncoding29543G29543TGT22AY.700.000417
noncoding29543G29543TGT22AY.860.00166
noncoding29543G29543TGT22AY.930.000546
noncoding29543G29543TGT22AZ.10.001735
noncoding29543G29543TGT22B.1.1.3440.021505
noncoding29543G29543TGT22B.1.1.3480.001592
noncoding29543G29543TGT22B.1.1.3540.008772
noncoding29543G29543TGT22B.1.1.3690.000892
noncoding29543G29543TGT22B.1.1.3740.004751
noncoding29543G29543TGT22B.1.1.3980.006452
noncoding29543G29543TGT22B.1.1.460.008734
noncoding29543G29543TGT22B.1.1.510.003436
noncoding29543G29543TGT22B.1.1.5140.076923
noncoding29543G29543TGT22B.1.1.990.047619
noncoding29543G29543TGT22B.1.1030.038462
noncoding29543G29543TGT22B.1.160.140.004237
noncoding29543G29543TGT22B.1.177.100.001756
noncoding29543G29543TGT22B.1.177.520.003515
noncoding29543G29543TGT22B.1.177.650.001331
noncoding29543G29543TGT22B.1.177.760.004988
noncoding29543G29543TGT22B.1.2600.006689
noncoding29543G29543TGT22B.1.2940.064516
noncoding29543G29543TGT22B.1.3240.00321
noncoding29543G29543TGT22B.1.3290.001215
noncoding29543G29543TGT22B.1.351.20.000605
noncoding29543G29543TGT22B.1.351.50.001199
noncoding29543G29543TGT22B.1.4000.000858
noncoding29543G29543TGT22B.1.4160.002538
noncoding29543G29543TGT22B.1.438.10.000215
noncoding29543G29543TGT22B.1.5760.001813
noncoding29543G29543TGT22B.1.5770.001375
noncoding29543G29543TGT22B.1.6000.011696
noncoding29543G29543TGT22B.1.6200.001892
noncoding29543G29543TGT22B.1.6250.004706
noncoding29543G29543TGT22B.40.004415
noncoding29543G29543TGT22P.1.10.10.01626
noncoding29543G29543TGT22P.1.160.000748
noncoding29543G29543TGT22P.1.60.003891
noncoding29543G29543TGT22P.30.00319
noncoding29543G29543TGT22Q.40.00091
noncoding29543G29543TGT110.055556
noncoding29543G29543TGT11A0.000387
noncoding29543G29543TGT11A.20.000662
noncoding29543G29543TGT11A.2.5.10.004808
noncoding29543G29543TGT11AD.20.000219
noncoding29543G29543TGT11AE.10.011364
noncoding29543G29543TGT11AY.1150.005208
noncoding29543G29543TGT11AY.120.000316
noncoding29543G29543TGT11AY.170.008197
noncoding29543G29543TGT11AY.190.00114
noncoding29543G29543TGT11AY.210.001898
noncoding29543G29543TGT11AY.280.00189
noncoding29543G29543TGT11AY.310.018519
noncoding29543G29543TGT11AY.39.1.10.000725
noncoding29543G29543TGT11AY.4.30.000842
noncoding29543G29543TGT11AY.46.30.000934
noncoding29543G29543TGT11AY.500.000799
noncoding29543G29543TGT11AY.570.000656
noncoding29543G29543TGT11AY.630.000387
noncoding29543G29543TGT11AY.670.000464
noncoding29543G29543TGT11AY.690.000187
noncoding29543G29543TGT11AY.720.001361
noncoding29543G29543TGT11AY.800.001129
noncoding29543G29543TGT11AY.880.000884
noncoding29543G29543TGT11AY.910.00073
noncoding29543G29543TGT11AY.940.000443
noncoding29543G29543TGT11AY.970.001701
noncoding29543G29543TGT11B.1.1.120.007463
noncoding29543G29543TGT11B.1.1.1340.011364
noncoding29543G29543TGT11B.1.1.1610.003534
noncoding29543G29543TGT11B.1.1.1810.004545
noncoding29543G29543TGT11B.1.1.2250.007194
noncoding29543G29543TGT11B.1.1.2440.015385
noncoding29543G29543TGT11B.1.1.2630.001558
noncoding29543G29543TGT11B.1.1.2690.001353
noncoding29543G29543TGT11B.1.1.2820.011628
noncoding29543G29543TGT11B.1.1.2830.023256
noncoding29543G29543TGT11B.1.1.2840.000107
noncoding29543G29543TGT11B.1.1.2940.001266
noncoding29543G29543TGT11B.1.1.2960.018182
noncoding29543G29543TGT11B.1.1.3000.010753
noncoding29543G29543TGT11B.1.1.3030.002762
noncoding29543G29543TGT11B.1.1.3050.003861
noncoding29543G29543TGT11B.1.1.3680.003086
noncoding29543G29543TGT11B.1.1.370.000193
noncoding29543G29543TGT11B.1.1.3720.000689
noncoding29543G29543TGT11B.1.1.4090.002833
noncoding29543G29543TGT11B.1.1.440.00241
noncoding29543G29543TGT11B.1.1.5280.004808
noncoding29543G29543TGT11B.1.1080.005814
noncoding29543G29543TGT11B.1.1200.007692
noncoding29543G29543TGT11B.1.1390.000733
noncoding29543G29543TGT11B.1.1470.000756
noncoding29543G29543TGT11B.1.177.240.001295
noncoding29543G29543TGT11B.1.177.280.007407
noncoding29543G29543TGT11B.1.177.310.011494
noncoding29543G29543TGT11B.1.177.40.000211
noncoding29543G29543TGT11B.1.177.440.000519
noncoding29543G29543TGT11B.1.177.630.002703
noncoding29543G29543TGT11B.1.177.770.000726
noncoding29543G29543TGT11B.1.177.870.000728
noncoding29543G29543TGT11B.1.221.30.000833
noncoding29543G29543TGT11B.1.2320.000537
noncoding29543G29543TGT11B.1.2370.004975
noncoding29543G29543TGT11B.1.243.10.022222
noncoding29543G29543TGT11B.1.2470.014925
noncoding29543G29543TGT11B.1.2520.006623
noncoding29543G29543TGT11B.1.2890.00266
noncoding29543G29543TGT11B.1.3200.001245
noncoding29543G29543TGT11B.1.3400.004292
noncoding29543G29543TGT11B.1.3500.002933
noncoding29543G29543TGT11B.1.36.190.009259
noncoding29543G29543TGT11B.1.36.350.002604
noncoding29543G29543TGT11B.1.36.360.000602
noncoding29543G29543TGT11B.1.36.380.001642
noncoding29543G29543TGT11B.1.36.390.002217
noncoding29543G29543TGT11B.1.36.80.001
noncoding29543G29543TGT11B.1.3660.004878
noncoding29543G29543TGT11B.1.3670.000792
noncoding29543G29543TGT11B.1.3750.00082
noncoding29543G29543TGT11B.1.3890.001002
noncoding29543G29543TGT11B.1.3910.001127
noncoding29543G29543TGT11B.1.3970.004854
noncoding29543G29543TGT11B.1.4220.000812
noncoding29543G29543TGT11B.1.4260.001009
noncoding29543G29543TGT11B.1.4280.00102
noncoding29543G29543TGT11B.1.428.10.034483
noncoding29543G29543TGT11B.1.4430.004673
noncoding29543G29543TGT11B.1.4460.02
noncoding29543G29543TGT11B.1.4700.001404
noncoding29543G29543TGT11B.1.4800.002488
noncoding29543G29543TGT11B.1.5270.003704
noncoding29543G29543TGT11B.1.5300.007143
noncoding29543G29543TGT11B.1.5370.02
noncoding29543G29543TGT11B.1.5500.013699
noncoding29543G29543TGT11B.1.595.30.026316
noncoding29543G29543TGT11B.1.5970.00463
noncoding29543G29543TGT11B.1.6090.000479
noncoding29543G29543TGT11B.1.617.30.002985
noncoding29543G29543TGT11B.1.6340.003425
noncoding29543G29543TGT11B.1.940.027027
noncoding29543G29543TGT11B.30.000831
noncoding29543G29543TGT11B.550.00295
noncoding29543G29543TGT11C.160.00106
noncoding29543G29543TGT11N.50.001767
noncoding29543G29543TGT11P.1.100.000269
noncoding29543G29543TGT11P.1.20.001156
noncoding29543G29543TGT11Q.60.006623
noncoding29543G29543TGT11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.