CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 29541 & Codon = G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding29541C29541GnoncodingCG139139129541-29541

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding29541C29541GCG139139All0.000027
noncoding29541C29541GCG9696B.1.258.170.009981
noncoding29541C29541GCG1111B.1.1.70.00001
noncoding29541C29541GCG55B.10.000046
noncoding29541C29541GCG55B.1.177.810.000947
noncoding29541C29541GCG44B.1.1.3060.001754
noncoding29541C29541GCG33AY.430.000013
noncoding29541C29541GCG220.111111
noncoding29541C29541GCG22AY.1020.000053
noncoding29541C29541GCG22AY.440.000012
noncoding29541C29541GCG22B.1.2580.000133
noncoding29541C29541GCG11AY.1030.000006
noncoding29541C29541GCG11AY.330.000067
noncoding29541C29541GCG11B0.000128
noncoding29541C29541GCG11B.1.10.000018
noncoding29541C29541GCG11B.1.36.290.000517
noncoding29541C29541GCG11B.1.6090.000479
noncoding29541C29541GCG11N.50.001767

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.