CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 28272

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding28272A28272TnoncodingAT8288282882128272-28272
noncoding28272A28272GnoncodingAG1054510545128272-28272
noncoding28272A28272-noncodingA-391391128272-28272
noncoding28272A28272CnoncodingAC107107128272-28272

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding28272A28272TAT8288282882All0.015852
noncoding28272A28272TAT4229842298B.1.4290.995224
noncoding28272A28272TAT1947619476B.1.4270.983487
noncoding28272A28272TAT1108311083B.1.6210.981057
noncoding28272A28272GAG1054510545All0.002017
noncoding28272A28272GAG93019301B.1.438.10.99764
noncoding28272A28272TAT19771977B.1.621.11
noncoding28272A28272TAT19761976A.2.50.986028
noncoding28272A28272TAT17721772B.1.6230.950644
noncoding28272A28272TAT16291629B.10.014921
noncoding28272A28272TAT634634A.2.5.20.996855
noncoding28272A28272GAG409409B.1.6250.962353
noncoding28272A28272-A-391391All0.000075
noncoding28272A28272TAT375375A.280.992063
noncoding28272A28272TAT208208A.2.5.11
noncoding28272A28272-A-194194AV.10.979798
noncoding28272A28272GAG190190B.1.6300.994764
noncoding28272A28272TAT160160C.1.20.680851
noncoding28272A28272TAT139139B.1.6320.932886
noncoding28272A28272-A-137137B.1.214.20.082134
noncoding28272A28272TAT125125B.1.20.001101
noncoding28272A28272GAG115115B.10.001053
noncoding28272A28272CAC107107All0.00002
noncoding28272A28272TAT9696A.2.5.30.989691
noncoding28272A28272TAT8282B.1.429.10.987952
noncoding28272A28272TAT7777B.1.1.70.000069
noncoding28272A28272TAT6767B.1.10.001215
noncoding28272A28272GAG6565B.1.4380.424837
noncoding28272A28272CAC6464P.10.001008
noncoding28272A28272GAG6262B.1.10.001125
noncoding28272A28272GAG5959B.1.5631
noncoding28272A28272TAT5252AY.40.000081
noncoding28272A28272GAG5252B.1.438.21
noncoding28272A28272TAT4343B.1.1.2200.079926
noncoding28272A28272TAT3737B.1.5960.003224
noncoding28272A28272TAT3131AY.430.000137
noncoding28272A28272GAG3131B.1.1.2220.006324
noncoding28272A28272TAT3131C.36.3.10.084239
noncoding28272A28272GAG3030B.1.1.10.009801
noncoding28272A28272TAT3030B.1.2390.03663
noncoding28272A28272GAG3030N.100.882353
noncoding28272A28272TAT2626B0.003323
noncoding28272A28272TAT2525B.1.3110.006864
noncoding28272A28272TAT2424B.1.6331
noncoding28272A28272GAG2323A.2.40.077441
noncoding28272A28272TAT2323B.1.3670.018225
noncoding28272A28272TAT2222B.1.617.20.000083
noncoding28272A28272TAT2020B.1.5950.005219
noncoding28272A28272CAC1818AY.40.000028
noncoding28272A28272TAT1818B.1.214.20.010791
noncoding28272A28272TAT1717B.1.1770.000224
noncoding28272A28272GAG1717B.1.20.00015
noncoding28272A28272GAG1616P.10.000252
noncoding28272A28272-A-1515B.1.1.70.000013
noncoding28272A28272-A-1515B.1.214.30.107143
noncoding28272A28272TAT1414B.1.1.4160.01267
noncoding28272A28272GAG1313B.1.438.31
noncoding28272A28272TAT1313B.1.575.10.031707
noncoding28272A28272TAT1212B.1.1.2320.021779
noncoding28272A28272TAT1010A0.00387
noncoding28272A28272TAT1010B.1.6180.040323
noncoding28272A28272GAG99B.1.1770.000119
noncoding28272A28272TAT99P.10.000142
noncoding28272A28272CAC99P.1.120.004356
noncoding28272A28272TAT88AY.460.000833
noncoding28272A28272TAT77B.1.1.1920.016166
noncoding28272A28272GAG77B.1.1.3060.003069
noncoding28272A28272GAG77B.1.1.330.002946
noncoding28272A28272GAG77B.1.1.4160.006335
noncoding28272A28272TAT77B.1.177.720.023729
noncoding28272A28272TAT77B.1.3510.000208
noncoding28272A28272TAT77B.1.5260.000165
noncoding28272A28272TAT77B.1.5610.002779
noncoding28272A28272CAC77P.1.170.001132
noncoding28272A28272TAT77P.1.170.001132
noncoding28272A28272TAT66B.1.1.2220.001224
noncoding28272A28272TAT66B.1.1570.01791
noncoding28272A28272TAT66P.1.120.002904
noncoding28272A28272TAT55B.1.1.2940.006329
noncoding28272A28272TAT55B.1.1.3350.064935
noncoding28272A28272GAG55B.1.1.70.000004
noncoding28272A28272GAG55B.1.2210.000355
noncoding28272A28272GAG55B.1.3110.001373
noncoding28272A28272-A-55B.1.3240.008026
noncoding28272A28272GAG55B.1.3510.000149
noncoding28272A28272TAT55B.1.360.00073
noncoding28272A28272TAT55B.1.6280.001762
noncoding28272A28272TAT44AY.1030.000025
noncoding28272A28272TAT44AY.440.000024
noncoding28272A28272-A-44B.1.214.10.08
noncoding28272A28272TAT44B.1.2340.000528
noncoding28272A28272TAT44B.1.351.50.002398
noncoding28272A28272GAG44B.1.360.000584
noncoding28272A28272TAT44B.1.6090.001918
noncoding28272A28272TAT33AY.1000.000138
noncoding28272A28272TAT33AY.1130.000427
noncoding28272A28272TAT33AY.250.000018
noncoding28272A28272TAT33AY.340.000291
noncoding28272A28272-A-33B.10.000027
noncoding28272A28272-A-33B.1.10.000054
noncoding28272A28272TAT33B.1.1.2690.00406
noncoding28272A28272GAG33B.1.1.280.000934
noncoding28272A28272GAG33B.1.1.5070.026087
noncoding28272A28272TAT33B.1.1260.003827
noncoding28272A28272GAG33B.1.1280.001906
noncoding28272A28272GAG33B.1.1600.000094
noncoding28272A28272TAT33B.1.177.530.007177
noncoding28272A28272GAG33B.1.4680.017143
noncoding28272A28272TAT33C.10.007177
noncoding28272A28272GAG33C.230.017442
noncoding28272A28272TAT33C.370.000348
noncoding28272A28272CAC33P.1.100.000808
noncoding28272A28272TAT22A.20.001324
noncoding28272A28272TAT22AY.1020.000053
noncoding28272A28272TAT22AY.390.000049
noncoding28272A28272TAT22AY.610.00021
noncoding28272A28272TAT22AY.680.000547
noncoding28272A28272TAT22AY.920.000575
noncoding28272A28272GAG22AZ.20.001642
noncoding28272A28272GAG22B0.000256
noncoding28272A28272GAG22B.1.1.2000.014925
noncoding28272A28272TAT22B.1.1.2290.011494
noncoding28272A28272GAG22B.1.1.2320.00363
noncoding28272A28272GAG22B.1.1.2940.002532
noncoding28272A28272TAT22B.1.1.4320.002532
noncoding28272A28272TAT22B.1.1.5070.017391
noncoding28272A28272GAG22B.1.1.5190.000079
noncoding28272A28272TAT22B.1.1.5190.000079
noncoding28272A28272GAG22B.1.160.280.005848
noncoding28272A28272TAT22B.1.177.440.001038
noncoding28272A28272TAT22B.1.2210.000142
noncoding28272A28272TAT22B.1.2430.000139
noncoding28272A28272GAG22B.1.2580.000133
noncoding28272A28272TAT22B.1.2810.043478
noncoding28272A28272TAT22B.1.36.170.000988
noncoding28272A28272GAG22B.1.3670.001585
noncoding28272A28272TAT22B.1.3690.00057
noncoding28272A28272TAT22B.1.3750.001639
noncoding28272A28272GAG22B.1.5610.000794
noncoding28272A28272TAT22B.1.5800.00813
noncoding28272A28272GAG22B.1.617.10.000258
noncoding28272A28272-A-22B.1.617.20.000008
noncoding28272A28272TAT22B.1.6370.000146
noncoding28272A28272GAG22B.1.6380.105263
noncoding28272A28272GAG22B.290.007018
noncoding28272A28272TAT22P.1.10.000635
noncoding28272A28272GAG22P.1.120.000968
noncoding28272A28272CAC22P.1.150.000465
noncoding28272A28272TAT22P.1.150.000465
noncoding28272A28272TAT22P.1.70.000639
noncoding28272A28272GAG11A0.000387
noncoding28272A28272TAT11A.2.40.003367
noncoding28272A28272-A-11A.23.10.000704
noncoding28272A28272TAT11AE.80.000489
noncoding28272A28272GAG11AY.1030.000006
noncoding28272A28272CAC11AY.1030.000006
noncoding28272A28272TAT11AY.1100.000113
noncoding28272A28272TAT11AY.16.10.00047
noncoding28272A28272TAT11AY.20.000356
noncoding28272A28272GAG11AY.40.000002
noncoding28272A28272TAT11AY.4.20.000022
noncoding28272A28272TAT11AY.420.00004
noncoding28272A28272-A-11AY.440.000006
noncoding28272A28272TAT11AY.450.000122
noncoding28272A28272TAT11AY.590.00053
noncoding28272A28272TAT11AY.710.000475
noncoding28272A28272TAT11AY.960.002075
noncoding28272A28272TAT11AY.98.10.000048
noncoding28272A28272TAT11B.1.1.10.000327
noncoding28272A28272GAG11B.1.1.1410.002012
noncoding28272A28272TAT11B.1.1.1860.003436
noncoding28272A28272-A-11B.1.1.1890.001513
noncoding28272A28272GAG11B.1.1.1920.002309
noncoding28272A28272GAG11B.1.1.2140.000055
noncoding28272A28272TAT11B.1.1.2160.00089
noncoding28272A28272-A-11B.1.1.2320.001815
noncoding28272A28272TAT11B.1.1.2360.006897
noncoding28272A28272TAT11B.1.1.2410.00207
noncoding28272A28272TAT11B.1.1.2730.006757
noncoding28272A28272TAT11B.1.1.280.000311
noncoding28272A28272CAC11B.1.1.2940.001266
noncoding28272A28272GAG11B.1.1.370.000193
noncoding28272A28272-A-11B.1.1.3970.002252
noncoding28272A28272TAT11B.1.1.440.00241
noncoding28272A28272-A-11B.1.1.4480.002033
noncoding28272A28272TAT11B.1.1.4590.015385
noncoding28272A28272TAT11B.1.1.4640.001473
noncoding28272A28272TAT11B.1.1.530.013699
noncoding28272A28272GAG11B.1.1.630.000386
noncoding28272A28272TAT11B.1.110.30.000718
noncoding28272A28272TAT11B.1.1190.010526
noncoding28272A28272GAG11B.1.1570.002985
noncoding28272A28272TAT11B.1.1600.000031
noncoding28272A28272GAG11B.1.160.320.004292
noncoding28272A28272TAT11B.1.177.310.011494
noncoding28272A28272TAT11B.1.177.600.000218
noncoding28272A28272GAG11B.1.177.630.002703
noncoding28272A28272TAT11B.1.177.70.000165
noncoding28272A28272TAT11B.1.177.730.000566
noncoding28272A28272GAG11B.1.177.770.000726
noncoding28272A28272TAT11B.1.2140.003663
noncoding28272A28272-A-11B.1.2140.003663
noncoding28272A28272GAG11B.1.214.20.0006
noncoding28272A28272-A-11B.1.214.40.009091
noncoding28272A28272TAT11B.1.2320.000537
noncoding28272A28272CAC11B.1.2340.000132
noncoding28272A28272GAG11B.1.2370.004975
noncoding28272A28272TAT11B.1.2370.004975
noncoding28272A28272GAG11B.1.2410.000812
noncoding28272A28272TAT11B.1.2580.000067
noncoding28272A28272TAT11B.1.258.110.000396
noncoding28272A28272TAT11B.1.258.30.001675
noncoding28272A28272-A-11B.1.3510.00003
noncoding28272A28272TAT11B.1.3540.043478
noncoding28272A28272TAT11B.1.36.100.004785
noncoding28272A28272GAG11B.1.36.290.000517
noncoding28272A28272GAG11B.1.36.380.001642
noncoding28272A28272GAG11B.1.3690.000285
noncoding28272A28272TAT11B.1.3990.001934
noncoding28272A28272GAG11B.1.4090.000781
noncoding28272A28272GAG11B.1.4390.005917
noncoding28272A28272TAT11B.1.4410.009615
noncoding28272A28272GAG11B.1.4560.003268
noncoding28272A28272GAG11B.1.4690.00361
noncoding28272A28272TAT11B.1.5060.02381
noncoding28272A28272TAT11B.1.5170.000427
noncoding28272A28272-A-11B.1.5250.000113
noncoding28272A28272GAG11B.1.5330.009615
noncoding28272A28272TAT11B.1.5510.00129
noncoding28272A28272TAT11B.1.5640.000426
noncoding28272A28272GAG11B.1.5670.003333
noncoding28272A28272TAT11B.1.5750.000303
noncoding28272A28272TAT11B.1.5760.000907
noncoding28272A28272GAG11B.1.5770.000687
noncoding28272A28272TAT11B.1.5820.000491
noncoding28272A28272TAT11B.1.5880.00091
noncoding28272A28272TAT11B.1.5990.00365
noncoding28272A28272-A-11B.1.6090.000479
noncoding28272A28272TAT11B.1.6120.002653
noncoding28272A28272TAT11B.1.617.10.000129
noncoding28272A28272CAC11B.1.617.20.000004
noncoding28272A28272GAG11B.1.6180.004032
noncoding28272A28272GAG11B.1.6200.000946
noncoding28272A28272-A-11B.1.6250.002353
noncoding28272A28272TAT11B.1.6380.052632
noncoding28272A28272GAG11B.1.9.40.006135
noncoding28272A28272TAT11B.1.940.027027
noncoding28272A28272GAG11B.280.003279
noncoding28272A28272TAT11B.30.000831
noncoding28272A28272TAT11B.40.002208
noncoding28272A28272TAT11B.4.10.018868
noncoding28272A28272TAT11B.550.00295
noncoding28272A28272TAT11B.570.015152
noncoding28272A28272GAG11C.330.058824
noncoding28272A28272TAT11C.37.10.002618
noncoding28272A28272TAT11N.50.001767
noncoding28272A28272GAG11N.60.007092
noncoding28272A28272-A-11P.10.000016
noncoding28272A28272TAT11P.1.100.000269
noncoding28272A28272GAG11P.1.170.000162
noncoding28272A28272TAT11Y.10.012821

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.