CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 28269

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding28269C28269TnoncodingCT24622462128269-28269
noncoding28269C28269AnoncodingCA10211021128269-28269
noncoding28269C28269-noncodingC-258258128269-28269
noncoding28269C28269GnoncodingCG44128269-28269

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding28269C28269TCT24622462All0.000471
noncoding28269C28269TCT16541654B.1.1.70.001481
noncoding28269C28269ACA10211021All0.000195
noncoding28269C28269-C-258258All0.000049
noncoding28269C28269TCT228228B.1.1490.780822
noncoding28269C28269-C-219219AY.340.021235
noncoding28269C28269ACA166166B.1.617.10.021408
noncoding28269C28269ACA9999P.10.00156
noncoding28269C28269ACA8686B.1.617.20.000324
noncoding28269C28269TCT8282AY.1030.000509
noncoding28269C28269ACA8282AY.40.000128
noncoding28269C28269ACA7070B.1.1.70.000063
noncoding28269C28269ACA5252AY.430.00023
noncoding28269C28269TCT4949B.1.20.000431
noncoding28269C28269TCT4444B.1.5090.038095
noncoding28269C28269TCT4343B.1.1770.000566
noncoding28269C28269ACA3939AY.98.10.001889
noncoding28269C28269ACA3838AY.440.000231
noncoding28269C28269TCT3737B.10.000339
noncoding28269C28269TCT3535AY.40.000054
noncoding28269C28269TCT3232B.1.617.10.004127
noncoding28269C28269ACA2525AY.230.001744
noncoding28269C28269TCT2525B.1.10.000454
noncoding28269C28269ACA2424P.1.120.011617
noncoding28269C28269ACA2222AY.1030.000137
noncoding28269C28269ACA2121P.1.170.003397
noncoding28269C28269ACA1919B.10.000174
noncoding28269C28269ACA1717AY.1020.000451
noncoding28269C28269ACA1717AY.160.006454
noncoding28269C28269TCT1717AY.440.000103
noncoding28269C28269ACA1717AY.610.001781
noncoding28269C28269TCT1717B.1.177.210.0013
noncoding28269C28269TCT1616AY.290.000252
noncoding28269C28269ACA1616B.1.1.280.00498
noncoding28269C28269TCT1515B.1.617.20.000056
noncoding28269C28269ACA1414AY.1130.001993
noncoding28269C28269TCT1111AY.250.000066
noncoding28269C28269ACA1111AY.680.003011
noncoding28269C28269-C-1111B.1.1.70.00001
noncoding28269C28269ACA1111B.1.617.30.032836
noncoding28269C28269ACA1010AY.1190.000353
noncoding28269C28269TCT1010B.1.3510.000297
noncoding28269C28269-C-1010B.1.617.20.000038
noncoding28269C28269TCT99B.1.1.5230.014063
noncoding28269C28269ACA88AY.290.000126
noncoding28269C28269ACA77AY.450.000852
noncoding28269C28269ACA77AY.550.006422
noncoding28269C28269ACA77AY.950.005327
noncoding28269C28269ACA77B.1.10.000127
noncoding28269C28269TCT77B.1.1.5190.000278
noncoding28269C28269ACA77B.1.177.150.004416
noncoding28269C28269TCT77B.550.020649
noncoding28269C28269ACA77P.1.100.001886
noncoding28269C28269ACA66AY.16.10.00282
noncoding28269C28269ACA66AY.260.00017
noncoding28269C28269ACA66AY.320.003195
noncoding28269C28269ACA66AY.400.005786
noncoding28269C28269TCT66B.1.36.290.003104
noncoding28269C28269TCT55AY.30.00005
noncoding28269C28269TCT55AY.430.000022
noncoding28269C28269ACA55AY.920.001436
noncoding28269C28269-C-55B.1.1490.017123
noncoding28269C28269GCG44All0.000001
noncoding28269C28269ACA44AY.1000.000184
noncoding28269C28269ACA44AY.1180.000251
noncoding28269C28269ACA44AY.200.000155
noncoding28269C28269TCT44AY.460.000416
noncoding28269C28269TCT44B.1.1.1980.005874
noncoding28269C28269TCT44B.1.258.170.000416
noncoding28269C28269TCT44B.1.4290.000094
noncoding28269C28269ACA44B.1.438.10.000429
noncoding28269C28269TCT33AY.1000.000138
noncoding28269C28269ACA33AY.1160.00086
noncoding28269C28269TCT33AY.130.000483
noncoding28269C28269ACA33AY.250.000018
noncoding28269C28269ACA33AY.750.000168
noncoding28269C28269ACA33AY.9.20.00011
noncoding28269C28269TCT33B.1.1.5250.016393
noncoding28269C28269ACA33B.1.20.000026
noncoding28269C28269TCT33B.1.2580.0002
noncoding28269C28269TCT33B.1.5960.000261
noncoding28269C28269TCT33C.350.002322
noncoding28269C28269ACA22AY.1010.000981
noncoding28269C28269ACA22AY.1070.000932
noncoding28269C28269TCT22AY.1100.000225
noncoding28269C28269ACA22AY.1170.000169
noncoding28269C28269ACA22AY.1210.000271
noncoding28269C28269TCT22AY.140.000176
noncoding28269C28269TCT22AY.260.000057
noncoding28269C28269ACA22AY.30.00002
noncoding28269C28269ACA22AY.380.000999
noncoding28269C28269TCT22AY.4.20.000043
noncoding28269C28269ACA22AY.420.00008
noncoding28269C28269ACA22AY.460.000208
noncoding28269C28269ACA22AY.46.60.000144
noncoding28269C28269-C-22AY.470.000062
noncoding28269C28269ACA22AY.75.10.000361
noncoding28269C28269-C-22AY.75.10.000361
noncoding28269C28269TCT22AY.99.20.000184
noncoding28269C28269TCT22B.1.1600.000062
noncoding28269C28269TCT22B.1.1620.01005
noncoding28269C28269ACA22B.1.2140.007326
noncoding28269C28269TCT22B.1.36.170.000988
noncoding28269C28269TCT22B.1.3670.001585
noncoding28269C28269TCT22B.1.3990.003868
noncoding28269C28269TCT22B.1.5250.000226
noncoding28269C28269TCT22B.1.5750.000607
noncoding28269C28269TCT22P.10.000032
noncoding28269C28269ACA22P.1.130.001797
noncoding28269C28269ACA110.055556
noncoding28269C28269TCT11A0.000387
noncoding28269C28269TCT11A.20.000662
noncoding28269C28269ACA11AY.10.000396
noncoding28269C28269TCT11AY.10.000396
noncoding28269C28269TCT11AY.1060.000335
noncoding28269C28269TCT11AY.1090.00074
noncoding28269C28269-C-11AY.1100.000113
noncoding28269C28269GCG11AY.1130.000142
noncoding28269C28269-C-11AY.1190.000035
noncoding28269C28269TCT11AY.120.000316
noncoding28269C28269-C-11AY.1200.000037
noncoding28269C28269ACA11AY.1200.000037
noncoding28269C28269ACA11AY.130.000161
noncoding28269C28269TCT11AY.160.00038
noncoding28269C28269TCT11AY.190.00114
noncoding28269C28269ACA11AY.210.001898
noncoding28269C28269-C-11AY.330.000067
noncoding28269C28269TCT11AY.360.000148
noncoding28269C28269TCT11AY.390.000025
noncoding28269C28269-C-11AY.40.000002
noncoding28269C28269ACA11AY.4.20.000022
noncoding28269C28269ACA11AY.4.2.10.000149
noncoding28269C28269ACA11AY.4.40.000409
noncoding28269C28269GCG11AY.430.000004
noncoding28269C28269ACA11AY.480.000465
noncoding28269C28269TCT11AY.50.000021
noncoding28269C28269ACA11AY.500.000799
noncoding28269C28269ACA11AY.520.000814
noncoding28269C28269ACA11AY.530.000288
noncoding28269C28269TCT11AY.540.000095
noncoding28269C28269ACA11AY.640.000595
noncoding28269C28269TCT11AY.700.000209
noncoding28269C28269ACA11AY.710.000475
noncoding28269C28269ACA11AY.740.000116
noncoding28269C28269ACA11AY.770.001127
noncoding28269C28269ACA11AY.780.001541
noncoding28269C28269ACA11AY.800.001129
noncoding28269C28269ACA11AY.840.000437
noncoding28269C28269ACA11AY.870.000833
noncoding28269C28269ACA11AY.910.00073
noncoding28269C28269TCT11AY.980.000079
noncoding28269C28269TCT11AY.98.10.000048
noncoding28269C28269TCT11AY.990.001049
noncoding28269C28269-C-11B.1.10.000018
noncoding28269C28269TCT11B.1.1.1740.003378
noncoding28269C28269TCT11B.1.1.1760.000439
noncoding28269C28269TCT11B.1.1.2140.000055
noncoding28269C28269ACA11B.1.1.2220.000204
noncoding28269C28269TCT11B.1.1.2220.000204
noncoding28269C28269TCT11B.1.1.2310.003096
noncoding28269C28269TCT11B.1.1.2840.000107
noncoding28269C28269ACA11B.1.1.3110.000358
noncoding28269C28269TCT11B.1.1.3160.000925
noncoding28269C28269TCT11B.1.1.370.000193
noncoding28269C28269TCT11B.1.1.3760.005952
noncoding28269C28269TCT11B.1.1.390.00051
noncoding28269C28269ACA11B.1.1.630.000386
noncoding28269C28269TCT11B.1.1.700.000341
noncoding28269C28269TCT11B.1.177.550.002331
noncoding28269C28269GCG11B.1.177.630.002703
noncoding28269C28269TCT11B.1.177.830.001481
noncoding28269C28269-C-11B.1.2100.002132
noncoding28269C28269TCT11B.1.2320.000537
noncoding28269C28269TCT11B.1.2390.001221
noncoding28269C28269TCT11B.1.2430.00007
noncoding28269C28269TCT11B.1.2650.001271
noncoding28269C28269TCT11B.1.3050.002151
noncoding28269C28269TCT11B.1.3490.000715
noncoding28269C28269TCT11B.1.360.000146
noncoding28269C28269TCT11B.1.36.10.00114
noncoding28269C28269ACA11B.1.36.180.00042
noncoding28269C28269TCT11B.1.390.003906
noncoding28269C28269-C-11B.1.390.003906
noncoding28269C28269TCT11B.1.5030.002488
noncoding28269C28269ACA11B.1.5260.000024
noncoding28269C28269TCT11B.1.5480.035714
noncoding28269C28269GCG11B.1.5580.004566
noncoding28269C28269ACA11B.1.5960.000087
noncoding28269C28269TCT11B.1.617.30.002985
noncoding28269C28269TCT11B.1.6210.000089
noncoding28269C28269TCT11B.1.6370.000073
noncoding28269C28269-C-11B.1.6370.000073
noncoding28269C28269TCT11B.1.770.045455
noncoding28269C28269ACA11C.160.00106
noncoding28269C28269ACA11D.20.000075
noncoding28269C28269TCT11D.20.000075
noncoding28269C28269ACA11P.1.140.000048
noncoding28269C28269TCT11P.20.000187
noncoding28269C28269TCT11Q.10.000126
noncoding28269C28269TCT11Q.80.000165
noncoding28269C28269ACA11Q.80.000165