CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 27892 | A27892- | noncoding | A | - | 7163 | 7163 | 1 | 27892-27892 | |
noncoding | 27892 | A27892G | noncoding | A | G | 1300 | 1300 | 1 | 27892-27892 | |
noncoding | 27892 | A27892C | noncoding | A | C | 36 | 36 | 1 | 27892-27892 | |
noncoding | 27892 | A27892T | noncoding | A | T | 12 | 12 | 1 | 27892-27892 | |
noncoding | 27892 | A27892D | noncoding | A | D | 1 | 1 | 1 | 27892-27892 | |
noncoding | 27892 | A27892K | noncoding | A | K | 1 | 1 | 1 | 27892-27892 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 27892 | A27892- | A | - | 7163 | 7163 | All | 0.00137 |
noncoding | 27892 | A27892- | A | - | 3103 | 3103 | B.1.1.318 | 0.936331 |
noncoding | 27892 | A27892G | A | G | 1300 | 1300 | All | 0.000249 |
noncoding | 27892 | A27892- | A | - | 1161 | 1161 | AZ.2 | 0.953202 |
noncoding | 27892 | A27892- | A | - | 1153 | 1153 | AZ.1 | 1 |
noncoding | 27892 | A27892G | A | G | 847 | 847 | B.1.628 | 0.29845 |
noncoding | 27892 | A27892- | A | - | 615 | 615 | AZ.3 | 0.93465 |
noncoding | 27892 | A27892- | A | - | 274 | 274 | AZ.4 | 0.919463 |
noncoding | 27892 | A27892- | A | - | 231 | 231 | AZ.5 | 0.810526 |
noncoding | 27892 | A27892G | A | G | 208 | 208 | B.1.526 | 0.004889 |
noncoding | 27892 | A27892G | A | G | 141 | 141 | AY.4 | 0.000219 |
noncoding | 27892 | A27892- | A | - | 110 | 110 | AZ.2.1 | 0.894309 |
noncoding | 27892 | A27892- | A | - | 93 | 93 | AZ.6 | 0.781513 |
noncoding | 27892 | A27892- | A | - | 70 | 70 | AY.4 | 0.000109 |
noncoding | 27892 | A27892- | A | - | 57 | 57 | B.1.1.7 | 0.000051 |
noncoding | 27892 | A27892- | A | - | 48 | 48 | B.1.243 | 0.00334 |
noncoding | 27892 | A27892- | A | - | 37 | 37 | AY.29 | 0.000584 |
noncoding | 27892 | A27892C | A | C | 36 | 36 | All | 0.000007 |
noncoding | 27892 | A27892G | A | G | 26 | 26 | B.1.1.7 | 0.000023 |
noncoding | 27892 | A27892G | A | G | 24 | 24 | B.1 | 0.00022 |
noncoding | 27892 | A27892- | A | - | 17 | 17 | B | 0.002173 |
noncoding | 27892 | A27892- | A | - | 14 | 14 | B.1.1 | 0.000254 |
noncoding | 27892 | A27892T | A | T | 12 | 12 | All | 0.000002 |
noncoding | 27892 | A27892- | A | - | 12 | 12 | B.1.2 | 0.000106 |
noncoding | 27892 | A27892G | A | G | 12 | 12 | B.1.627 | 0.024242 |
noncoding | 27892 | A27892- | A | - | 10 | 10 | B.1 | 0.000092 |
noncoding | 27892 | A27892- | A | - | 9 | 9 | AY.103 | 0.000056 |
noncoding | 27892 | A27892C | A | C | 8 | 8 | B.1.427 | 0.000404 |
noncoding | 27892 | A27892- | A | - | 8 | 8 | B.1.617.2 | 0.00003 |
noncoding | 27892 | A27892G | A | G | 6 | 6 | AY.103 | 0.000037 |
noncoding | 27892 | A27892- | A | - | 6 | 6 | AY.29.1 | 0.001323 |
noncoding | 27892 | A27892- | A | - | 6 | 6 | AY.3 | 0.00006 |
noncoding | 27892 | A27892- | A | - | 6 | 6 | B.1.1.265 | 0.018927 |
noncoding | 27892 | A27892- | A | - | 6 | 6 | B.1.243.2 | 0.086957 |
noncoding | 27892 | A27892- | A | - | 6 | 6 | P.1 | 0.000095 |
noncoding | 27892 | A27892C | A | C | 5 | 5 | AY.4 | 0.000008 |
noncoding | 27892 | A27892- | A | - | 5 | 5 | AY.44 | 0.00003 |
noncoding | 27892 | A27892- | A | - | 5 | 5 | B.1.1.519 | 0.000199 |
noncoding | 27892 | A27892C | A | C | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 27892 | A27892- | A | - | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 27892 | A27892- | A | - | 4 | 4 | 0.222222 | |
noncoding | 27892 | A27892- | A | - | 4 | 4 | AT.1 | 0.020513 |
noncoding | 27892 | A27892C | A | C | 4 | 4 | P.1 | 0.000063 |
noncoding | 27892 | A27892- | A | - | 3 | 3 | AY.20 | 0.000117 |
noncoding | 27892 | A27892- | A | - | 3 | 3 | AY.37 | 0.000948 |
noncoding | 27892 | A27892- | A | - | 3 | 3 | AY.43 | 0.000013 |
noncoding | 27892 | A27892- | A | - | 3 | 3 | B.1.126 | 0.003827 |
noncoding | 27892 | A27892C | A | C | 2 | 2 | 0.111111 | |
noncoding | 27892 | A27892- | A | - | 2 | 2 | A.2.2 | 0.003378 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 27892 | A27892C | A | C | 2 | 2 | AY.103 | 0.000012 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | AY.118 | 0.000125 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | AY.43 | 0.000009 |
noncoding | 27892 | A27892C | A | C | 2 | 2 | AY.44 | 0.000012 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | AY.46 | 0.000208 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | AY.47 | 0.000062 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | AY.48 | 0.00093 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | AY.59 | 0.001059 |
noncoding | 27892 | A27892T | A | T | 2 | 2 | B.1.1 | 0.000036 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 27892 | A27892T | A | T | 2 | 2 | B.1.1.7 | 0.000002 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 27892 | A27892T | A | T | 2 | 2 | B.1.177 | 0.000026 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 27892 | A27892C | A | C | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | B.1.474 | 0.003802 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 27892 | A27892G | A | G | 2 | 2 | B.1.617.2 | 0.000008 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | P.1.12 | 0.000968 |
noncoding | 27892 | A27892- | A | - | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 27892 | A27892K | A | K | 1 | 1 | All | 0 |
noncoding | 27892 | A27892D | A | D | 1 | 1 | All | 0 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.100 | 0.000046 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.100 | 0.000046 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.107 | 0.000466 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.108 | 0.001103 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.118 | 0.000063 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.119 | 0.000035 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.19 | 0.00114 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.20 | 0.000039 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.25 | 0.000006 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.3 | 0.00001 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.36 | 0.000148 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.39 | 0.000025 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.39 | 0.000025 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 27892 | A27892K | A | K | 1 | 1 | AY.43 | 0.000004 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | AY.43 | 0.000004 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.44 | 0.000006 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.55 | 0.000917 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.61 | 0.000105 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.67 | 0.000464 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.74 | 0.000116 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | AY.82 | 0.001357 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.99 | 0.001049 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | AY.99.1 | 0.001553 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | B.1 | 0.000009 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | B.1 | 0.000009 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.1 | 0.000018 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | B.1.1.282 | 0.011628 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.1.525 | 0.005464 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.177.23 | 0.003236 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.195 | 0.005025 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.232 | 0.000537 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.247 | 0.014925 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | B.1.442 | 0.035714 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | B.1.76 | 0.011364 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | B.55 | 0.00295 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | C.26 | 0.007353 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 27892 | A27892D | A | D | 1 | 1 | P.1 | 0.000016 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 27892 | A27892G | A | G | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 27892 | A27892T | A | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 27892 | A27892C | A | C | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 27892 | A27892- | A | - | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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