CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 27890 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding27890G27890-noncodingG-73817381127890-27890

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding27890G27890-G-73817381All0.001412
noncoding27890G27890-G-31073107B.1.1.3180.937538
noncoding27890G27890-G-11611161AZ.20.953202
noncoding27890G27890-G-11531153AZ.11
noncoding27890G27890-G-618618AZ.30.93921
noncoding27890G27890-G-274274AZ.40.919463
noncoding27890G27890-G-231231AZ.50.810526
noncoding27890G27890-G-154154B.1.1.2220.031416
noncoding27890G27890-G-110110AZ.2.10.894309
noncoding27890G27890-G-9797AY.40.000151
noncoding27890G27890-G-9393AZ.60.781513
noncoding27890G27890-G-5656B.1.1.70.00005
noncoding27890G27890-G-4848B.1.2430.00334
noncoding27890G27890-G-3737AY.290.000584
noncoding27890G27890-G-3030B.1.10.000544
noncoding27890G27890-G-1717B0.002173
noncoding27890G27890-G-1313B.1.20.000114
noncoding27890G27890-G-1212B.10.00011
noncoding27890G27890-G-99AY.1030.000056
noncoding27890G27890-G-99B.1.617.20.000034
noncoding27890G27890-G-66AY.29.10.001323
noncoding27890G27890-G-66AY.30.00006
noncoding27890G27890-G-66AY.430.000027
noncoding27890G27890-G-66B.1.1.2650.018927
noncoding27890G27890-G-66B.1.243.20.086957
noncoding27890G27890-G-66P.10.000095
noncoding27890G27890-G-55AY.440.00003
noncoding27890G27890-G-55B.1.1.5190.000199
noncoding27890G27890-G-55B.1.5260.000118
noncoding27890G27890-G-440.222222
noncoding27890G27890-G-44AT.10.020513
noncoding27890G27890-G-44AY.250.000024
noncoding27890G27890-G-33AY.200.000117
noncoding27890G27890-G-33AY.370.000948
noncoding27890G27890-G-33B.1.1260.003827
noncoding27890G27890-G-33P.1.150.000697
noncoding27890G27890-G-22A.2.20.003378
noncoding27890G27890-G-22AD.20.000438
noncoding27890G27890-G-22AY.1180.000125
noncoding27890G27890-G-22AY.470.000062
noncoding27890G27890-G-22AY.480.00093
noncoding27890G27890-G-22B.1.1.2140.000111
noncoding27890G27890-G-22B.1.1.3060.000877
noncoding27890G27890-G-22B.1.3510.000059
noncoding27890G27890-G-22B.1.4270.000101
noncoding27890G27890-G-22B.1.4290.000047
noncoding27890G27890-G-22B.1.5680.002222
noncoding27890G27890-G-22B.1.5760.001813
noncoding27890G27890-G-22B.1.6210.000177
noncoding27890G27890-G-22P.1.120.000968
noncoding27890G27890-G-22P.1.170.000324
noncoding27890G27890-G-11A.10.000282
noncoding27890G27890-G-11A.2.50.000499
noncoding27890G27890-G-11A.23.10.000704
noncoding27890G27890-G-11AY.1000.000046
noncoding27890G27890-G-11AY.1080.001103
noncoding27890G27890-G-11AY.1170.000085
noncoding27890G27890-G-11AY.1200.000037
noncoding27890G27890-G-11AY.1210.000135
noncoding27890G27890-G-11AY.190.00114
noncoding27890G27890-G-11AY.230.00007
noncoding27890G27890-G-11AY.260.000028
noncoding27890G27890-G-11AY.360.000148
noncoding27890G27890-G-11AY.390.000025
noncoding27890G27890-G-11AY.4.20.000022
noncoding27890G27890-G-11AY.4.50.000107
noncoding27890G27890-G-11AY.550.000917
noncoding27890G27890-G-11AY.610.000105
noncoding27890G27890-G-11AY.670.000464
noncoding27890G27890-G-11AY.740.000116
noncoding27890G27890-G-11AY.750.000056
noncoding27890G27890-G-11AY.990.001049
noncoding27890G27890-G-11AY.99.10.001553
noncoding27890G27890-G-11B.1.1.2160.00089
noncoding27890G27890-G-11B.1.1.2840.000107
noncoding27890G27890-G-11B.1.1.3540.004386
noncoding27890G27890-G-11B.1.1.370.000193
noncoding27890G27890-G-11B.1.1.440.00241
noncoding27890G27890-G-11B.1.1.4640.001473
noncoding27890G27890-G-11B.1.1.5250.005464
noncoding27890G27890-G-11B.1.1600.000031
noncoding27890G27890-G-11B.1.1770.000013
noncoding27890G27890-G-11B.1.177.540.000606
noncoding27890G27890-G-11B.1.177.630.002703
noncoding27890G27890-G-11B.1.177.70.000165
noncoding27890G27890-G-11B.1.177.830.001481
noncoding27890G27890-G-11B.1.1950.005025
noncoding27890G27890-G-11B.1.2580.000067
noncoding27890G27890-G-11B.1.3690.000285
noncoding27890G27890-G-11B.1.4700.001404
noncoding27890G27890-G-11B.1.5820.000491
noncoding27890G27890-G-11B.1.5960.000087
noncoding27890G27890-G-11B.1.6300.005236
noncoding27890G27890-G-11C.260.007353
noncoding27890G27890-G-11C.370.000116
noncoding27890G27890-G-11P.1.10.000318
noncoding27890G27890-G-11P.1.140.000048
noncoding27890G27890-G-11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.