CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 27889

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding27889C27889-noncodingC-73717371127889-27889
noncoding27889C27889TnoncodingCT57585758127889-27889
noncoding27889C27889AnoncodingCA8080127889-27889
noncoding27889C27889GnoncodingCG3030127889-27889
noncoding27889C27889WnoncodingCW11127889-27889

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding27889C27889-C-73717371All0.00141
noncoding27889C27889TCT57585758All0.001101
noncoding27889C27889TCT34633463B.1.1.70.0031
noncoding27889C27889-C-31063106B.1.1.3180.937236
noncoding27889C27889-C-11611161AZ.20.953202
noncoding27889C27889-C-11531153AZ.11
noncoding27889C27889TCT818818B.1.4290.019247
noncoding27889C27889-C-618618AZ.30.93921
noncoding27889C27889TCT421421B.1.1.5190.016718
noncoding27889C27889-C-274274AZ.40.919463
noncoding27889C27889-C-231231AZ.50.810526
noncoding27889C27889TCT176176B.1.6300.921466
noncoding27889C27889-C-156156B.1.1.2220.031824
noncoding27889C27889-C-110110AZ.2.10.894309
noncoding27889C27889TCT106106B.10.000971
noncoding27889C27889-C-9797AY.40.000151
noncoding27889C27889-C-9393AZ.60.781513
noncoding27889C27889ACA8080All0.000015
noncoding27889C27889TCT7070B.1.20.000616
noncoding27889C27889-C-5656B.1.1.70.00005
noncoding27889C27889TCT5353B.1.10.000961
noncoding27889C27889TCT4949P.10.000772
noncoding27889C27889-C-4848B.1.2430.00334
noncoding27889C27889ACA3838B.1.177.450.014487
noncoding27889C27889-C-3737AY.290.000584
noncoding27889C27889TCT3737B.1.617.20.000139
noncoding27889C27889TCT3535AY.40.000054
noncoding27889C27889TCT3131B.1.1770.000408
noncoding27889C27889GCG3030All0.000006
noncoding27889C27889-C-3030B.1.10.000544
noncoding27889C27889TCT2929AY.250.000174
noncoding27889C27889TCT2424B.1.177.770.017429
noncoding27889C27889TCT1919AY.430.000084
noncoding27889C27889-C-1717B0.002173
noncoding27889C27889TCT1515AY.440.000091
noncoding27889C27889TCT1414AY.380.00699
noncoding27889C27889TCT1414B.1.1.3060.006138
noncoding27889C27889-C-1313B.1.20.000114
noncoding27889C27889TCT1212AY.1030.000075
noncoding27889C27889TCT1212AY.270.000777
noncoding27889C27889GCG1212AY.430.000053
noncoding27889C27889-C-1212B.10.00011
noncoding27889C27889TCT1111B.1.4800.027363
noncoding27889C27889TCT1111B.1.5260.000259
noncoding27889C27889TCT1010B.1.1.630.003858
noncoding27889C27889TCT1010B.1.360.001459
noncoding27889C27889-C-99AY.1030.000056
noncoding27889C27889TCT99AY.50.000186
noncoding27889C27889TCT99B.1.4270.000454
noncoding27889C27889GCG99B.1.617.20.000034
noncoding27889C27889-C-88B.1.617.20.00003
noncoding27889C27889-C-66AY.29.10.001323
noncoding27889C27889-C-66AY.30.00006
noncoding27889C27889-C-66AY.430.000027
noncoding27889C27889TCT66AY.470.000187
noncoding27889C27889-C-66B.1.1.2650.018927
noncoding27889C27889TCT66B.1.1600.000187
noncoding27889C27889TCT66B.1.177.810.001136
noncoding27889C27889-C-66B.1.243.20.086957
noncoding27889C27889TCT66B.1.5960.000523
noncoding27889C27889TCT55AY.140.00044
noncoding27889C27889TCT55AY.30.00005
noncoding27889C27889TCT55AY.690.000933
noncoding27889C27889TCT55B.1.1.2410.010352
noncoding27889C27889TCT55B.1.1.3180.001509
noncoding27889C27889-C-55B.1.1.5190.000199
noncoding27889C27889ACA55B.1.1770.000066
noncoding27889C27889TCT55B.1.2430.000348
noncoding27889C27889TCT55B.1.2580.000333
noncoding27889C27889TCT55B.1.5250.000566
noncoding27889C27889-C-55B.1.5260.000118
noncoding27889C27889TCT55D.20.000375
noncoding27889C27889-C-440.222222
noncoding27889C27889-C-44AT.10.020513
noncoding27889C27889TCT44AV.10.020202
noncoding27889C27889-C-44AY.250.000024
noncoding27889C27889TCT44AY.330.000267
noncoding27889C27889ACA44AY.40.000006
noncoding27889C27889GCG44AY.440.000024
noncoding27889C27889ACA44AY.440.000024
noncoding27889C27889-C-44AY.440.000024
noncoding27889C27889ACA44B.1.10.000073
noncoding27889C27889TCT44B.1.2210.000284
noncoding27889C27889TCT44B.1.4620.028986
noncoding27889C27889TCT44B.1.5090.003463
noncoding27889C27889TCT44B.1.5880.00364
noncoding27889C27889TCT44B.4.70.040404
noncoding27889C27889TCT44N.50.007067
noncoding27889C27889TCT33AE.80.001467
noncoding27889C27889TCT33AY.1000.000138
noncoding27889C27889TCT33AY.1020.00008
noncoding27889C27889TCT33AY.1190.000106
noncoding27889C27889-C-33AY.200.000117
noncoding27889C27889TCT33AY.260.000085
noncoding27889C27889-C-33AY.370.000948
noncoding27889C27889TCT33AY.390.000074
noncoding27889C27889ACA33AY.540.000286
noncoding27889C27889TCT33AY.590.001589
noncoding27889C27889TCT33AY.9.10.000251
noncoding27889C27889TCT33B0.000383
noncoding27889C27889TCT33B.1.1.2220.000612
noncoding27889C27889TCT33B.1.1.2770.002276
noncoding27889C27889TCT33B.1.1.280.000934
noncoding27889C27889TCT33B.1.1.330.001263
noncoding27889C27889ACA33B.1.1.5190.000119
noncoding27889C27889ACA33B.1.1.70.000003
noncoding27889C27889-C-33B.1.1260.003827
noncoding27889C27889TCT33B.1.2290.029126
noncoding27889C27889TCT33B.1.2400.000647
noncoding27889C27889TCT33B.1.3890.003006
noncoding27889C27889TCT33B.1.4000.001287
noncoding27889C27889TCT33B.1.6210.000266
noncoding27889C27889TCT33B.1.621.10.001517
noncoding27889C27889ACA33P.10.000047
noncoding27889C27889-C-33P.1.150.000697
noncoding27889C27889TCT33Q.80.000495
noncoding27889C27889TCT22A0.000774
noncoding27889C27889-C-22A.2.20.003378
noncoding27889C27889-C-22AD.20.000438
noncoding27889C27889TCT22AY.1070.000932
noncoding27889C27889-C-22AY.1180.000125
noncoding27889C27889TCT22AY.120.10.000642
noncoding27889C27889TCT22AY.1210.000271
noncoding27889C27889TCT22AY.190.002281
noncoding27889C27889TCT22AY.20.000712
noncoding27889C27889ACA22AY.430.000009
noncoding27889C27889TCT22AY.46.60.000144
noncoding27889C27889-C-22AY.470.000062
noncoding27889C27889-C-22AY.480.00093
noncoding27889C27889TCT22AY.60.000082
noncoding27889C27889TCT22AY.740.000231
noncoding27889C27889TCT22AY.750.000112
noncoding27889C27889TCT22B.1.1.2140.000111
noncoding27889C27889-C-22B.1.1.2140.000111
noncoding27889C27889TCT22B.1.1.2890.004167
noncoding27889C27889-C-22B.1.1.3060.000877
noncoding27889C27889TCT22B.1.1.3160.00185
noncoding27889C27889TCT22B.1.1.3510.005587
noncoding27889C27889TCT22B.1.1.4110.029412
noncoding27889C27889TCT22B.1.177.210.000153
noncoding27889C27889ACA22B.1.177.520.003515
noncoding27889C27889TCT22B.1.177.60.001953
noncoding27889C27889TCT22B.1.177.600.000437
noncoding27889C27889TCT22B.1.177.860.000367
noncoding27889C27889ACA22B.1.20.000018
noncoding27889C27889TCT22B.1.258.110.000793
noncoding27889C27889-C-22B.1.3510.000059
noncoding27889C27889TCT22B.1.36.290.001035
noncoding27889C27889TCT22B.1.3690.00057
noncoding27889C27889TCT22B.1.3960.001411
noncoding27889C27889-C-22B.1.4270.000101
noncoding27889C27889TCT22B.1.5380.016129
noncoding27889C27889-C-22B.1.5680.002222
noncoding27889C27889-C-22B.1.5760.001813
noncoding27889C27889TCT22B.1.6090.000959
noncoding27889C27889TCT22B.1.617.10.000258
noncoding27889C27889-C-22B.1.6210.000177
noncoding27889C27889TCT22B.1.6370.000146
noncoding27889C27889TCT22C.160.002121
noncoding27889C27889TCT22C.370.000232
noncoding27889C27889TCT22N.90.011905
noncoding27889C27889-C-22P.10.000032
noncoding27889C27889TCT22P.1.100.000539
noncoding27889C27889-C-22P.1.120.000968
noncoding27889C27889TCT22P.1.130.001797
noncoding27889C27889TCT22P.1.150.000465
noncoding27889C27889GCG22P.1.40.001953
noncoding27889C27889TCT22P.1.70.000639
noncoding27889C27889TCT22R.10.00018
noncoding27889C27889-C-11A.2.50.000499
noncoding27889C27889TCT11A.23.10.000704
noncoding27889C27889-C-11A.23.10.000704
noncoding27889C27889WCW11All0
noncoding27889C27889TCT11AY.100.00053
noncoding27889C27889-C-11AY.1000.000046
noncoding27889C27889-C-11AY.1080.001103
noncoding27889C27889TCT11AY.110.001339
noncoding27889C27889TCT11AY.1100.000113
noncoding27889C27889-C-11AY.1170.000085
noncoding27889C27889TCT11AY.1200.000037
noncoding27889C27889-C-11AY.1200.000037
noncoding27889C27889-C-11AY.1210.000135
noncoding27889C27889-C-11AY.190.00114
noncoding27889C27889TCT11AY.200.000039
noncoding27889C27889GCG11AY.230.00007
noncoding27889C27889-C-11AY.230.00007
noncoding27889C27889-C-11AY.260.000028
noncoding27889C27889TCT11AY.29.10.000221
noncoding27889C27889-C-11AY.360.000148
noncoding27889C27889ACA11AY.390.000025
noncoding27889C27889-C-11AY.390.000025
noncoding27889C27889TCT11AY.39.10.00004
noncoding27889C27889-C-11AY.4.20.000022
noncoding27889C27889-C-11AY.4.50.000107
noncoding27889C27889GCG11AY.460.000104
noncoding27889C27889ACA11AY.50.000021
noncoding27889C27889TCT11AY.5.40.000277
noncoding27889C27889-C-11AY.550.000917
noncoding27889C27889-C-11AY.610.000105
noncoding27889C27889TCT11AY.620.000436
noncoding27889C27889TCT11AY.640.000595
noncoding27889C27889TCT11AY.670.000464
noncoding27889C27889-C-11AY.670.000464
noncoding27889C27889TCT11AY.70.000196
noncoding27889C27889TCT11AY.710.000475
noncoding27889C27889-C-11AY.740.000116
noncoding27889C27889-C-11AY.750.000056
noncoding27889C27889GCG11AY.75.10.00018
noncoding27889C27889TCT11AY.790.001211
noncoding27889C27889WCW11AY.840.000437
noncoding27889C27889TCT11AY.90.000068
noncoding27889C27889TCT11AY.9.20.000037
noncoding27889C27889TCT11AY.980.000079
noncoding27889C27889-C-11AY.990.001049
noncoding27889C27889-C-11AY.99.10.001553
noncoding27889C27889TCT11B.1.1.1350.004695
noncoding27889C27889TCT11B.1.1.1700.001247
noncoding27889C27889TCT11B.1.1.1710.003676
noncoding27889C27889-C-11B.1.1.2160.00089
noncoding27889C27889ACA11B.1.1.2220.000204
noncoding27889C27889TCT11B.1.1.2240.014286
noncoding27889C27889ACA11B.1.1.280.000311
noncoding27889C27889TCT11B.1.1.2820.011628
noncoding27889C27889-C-11B.1.1.2840.000107
noncoding27889C27889-C-11B.1.1.3540.004386
noncoding27889C27889-C-11B.1.1.370.000193
noncoding27889C27889TCT11B.1.1.370.000193
noncoding27889C27889TCT11B.1.1.3970.002252
noncoding27889C27889TCT11B.1.1.4090.002833
noncoding27889C27889TCT11B.1.1.4160.000905
noncoding27889C27889-C-11B.1.1.440.00241
noncoding27889C27889-C-11B.1.1.4640.001473
noncoding27889C27889TCT11B.1.1.5260.003546
noncoding27889C27889ACA11B.1.1.5280.004808
noncoding27889C27889TCT11B.1.1.890.006061
noncoding27889C27889TCT11B.1.1050.009615
noncoding27889C27889TCT11B.1.1490.003425
noncoding27889C27889-C-11B.1.1600.000031
noncoding27889C27889TCT11B.1.160.160.000929
noncoding27889C27889-C-11B.1.1770.000013
noncoding27889C27889-C-11B.1.177.540.000606
noncoding27889C27889TCT11B.1.177.560.000668
noncoding27889C27889-C-11B.1.177.630.002703
noncoding27889C27889-C-11B.1.177.70.000165
noncoding27889C27889TCT11B.1.177.70.000165
noncoding27889C27889TCT11B.1.177.750.001041
noncoding27889C27889TCT11B.1.177.80.000752
noncoding27889C27889-C-11B.1.177.830.001481
noncoding27889C27889TCT11B.1.1890.004292
noncoding27889C27889TCT11B.1.1920.009259
noncoding27889C27889-C-11B.1.1950.005025
noncoding27889C27889TCT11B.1.2060.000816
noncoding27889C27889TCT11B.1.2410.000812
noncoding27889C27889-C-11B.1.2580.000067
noncoding27889C27889TCT11B.1.258.30.001675
noncoding27889C27889TCT11B.1.3110.000275
noncoding27889C27889TCT11B.1.3190.003049
noncoding27889C27889TCT11B.1.3510.00003
noncoding27889C27889TCT11B.1.351.20.000303
noncoding27889C27889TCT11B.1.36.350.002604
noncoding27889C27889TCT11B.1.36.360.000602
noncoding27889C27889TCT11B.1.3610.001289
noncoding27889C27889-C-11B.1.3690.000285
noncoding27889C27889TCT11B.1.4090.000781
noncoding27889C27889TCT11B.1.4110.003704
noncoding27889C27889TCT11B.1.4250.002994
noncoding27889C27889-C-11B.1.4290.000024
noncoding27889C27889ACA11B.1.438.10.000107
noncoding27889C27889TCT11B.1.466.20.000391
noncoding27889C27889TCT11B.1.4700.001404
noncoding27889C27889-C-11B.1.4700.001404
noncoding27889C27889ACA11B.1.4970.000315
noncoding27889C27889TCT11B.1.5030.002488
noncoding27889C27889TCT11B.1.5330.009615
noncoding27889C27889TCT11B.1.5640.000426
noncoding27889C27889TCT11B.1.5680.001111
noncoding27889C27889TCT11B.1.5750.000303
noncoding27889C27889TCT11B.1.5800.004065
noncoding27889C27889-C-11B.1.5820.000491
noncoding27889C27889TCT11B.1.5930.01087
noncoding27889C27889-C-11B.1.5960.000087
noncoding27889C27889TCT11B.1.5990.00365
noncoding27889C27889TCT11B.1.6230.000536
noncoding27889C27889-C-11B.1.6300.005236
noncoding27889C27889TCT11B.1.6330.041667
noncoding27889C27889TCT11B.1.930.000934
noncoding27889C27889TCT11B.580.010204
noncoding27889C27889-C-11C.260.007353
noncoding27889C27889TCT11C.360.000911
noncoding27889C27889-C-11C.370.000116
noncoding27889C27889TCT11L.30.003546
noncoding27889C27889-C-11P.1.10.000318
noncoding27889C27889-C-11P.1.140.000048
noncoding27889C27889TCT11P.1.170.000162
noncoding27889C27889TCT11P.1.80.004785
noncoding27889C27889-C-11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.