CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 27889 | C27889- | noncoding | C | - | 7371 | 7371 | 1 | 27889-27889 | |
noncoding | 27889 | C27889T | noncoding | C | T | 5758 | 5758 | 1 | 27889-27889 | |
noncoding | 27889 | C27889A | noncoding | C | A | 80 | 80 | 1 | 27889-27889 | |
noncoding | 27889 | C27889G | noncoding | C | G | 30 | 30 | 1 | 27889-27889 | |
noncoding | 27889 | C27889W | noncoding | C | W | 1 | 1 | 1 | 27889-27889 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 27889 | C27889- | C | - | 7371 | 7371 | All | 0.00141 |
noncoding | 27889 | C27889T | C | T | 5758 | 5758 | All | 0.001101 |
noncoding | 27889 | C27889T | C | T | 3463 | 3463 | B.1.1.7 | 0.0031 |
noncoding | 27889 | C27889- | C | - | 3106 | 3106 | B.1.1.318 | 0.937236 |
noncoding | 27889 | C27889- | C | - | 1161 | 1161 | AZ.2 | 0.953202 |
noncoding | 27889 | C27889- | C | - | 1153 | 1153 | AZ.1 | 1 |
noncoding | 27889 | C27889T | C | T | 818 | 818 | B.1.429 | 0.019247 |
noncoding | 27889 | C27889- | C | - | 618 | 618 | AZ.3 | 0.93921 |
noncoding | 27889 | C27889T | C | T | 421 | 421 | B.1.1.519 | 0.016718 |
noncoding | 27889 | C27889- | C | - | 274 | 274 | AZ.4 | 0.919463 |
noncoding | 27889 | C27889- | C | - | 231 | 231 | AZ.5 | 0.810526 |
noncoding | 27889 | C27889T | C | T | 176 | 176 | B.1.630 | 0.921466 |
noncoding | 27889 | C27889- | C | - | 156 | 156 | B.1.1.222 | 0.031824 |
noncoding | 27889 | C27889- | C | - | 110 | 110 | AZ.2.1 | 0.894309 |
noncoding | 27889 | C27889T | C | T | 106 | 106 | B.1 | 0.000971 |
noncoding | 27889 | C27889- | C | - | 97 | 97 | AY.4 | 0.000151 |
noncoding | 27889 | C27889- | C | - | 93 | 93 | AZ.6 | 0.781513 |
noncoding | 27889 | C27889A | C | A | 80 | 80 | All | 0.000015 |
noncoding | 27889 | C27889T | C | T | 70 | 70 | B.1.2 | 0.000616 |
noncoding | 27889 | C27889- | C | - | 56 | 56 | B.1.1.7 | 0.00005 |
noncoding | 27889 | C27889T | C | T | 53 | 53 | B.1.1 | 0.000961 |
noncoding | 27889 | C27889T | C | T | 49 | 49 | P.1 | 0.000772 |
noncoding | 27889 | C27889- | C | - | 48 | 48 | B.1.243 | 0.00334 |
noncoding | 27889 | C27889A | C | A | 38 | 38 | B.1.177.45 | 0.014487 |
noncoding | 27889 | C27889- | C | - | 37 | 37 | AY.29 | 0.000584 |
noncoding | 27889 | C27889T | C | T | 37 | 37 | B.1.617.2 | 0.000139 |
noncoding | 27889 | C27889T | C | T | 35 | 35 | AY.4 | 0.000054 |
noncoding | 27889 | C27889T | C | T | 31 | 31 | B.1.177 | 0.000408 |
noncoding | 27889 | C27889G | C | G | 30 | 30 | All | 0.000006 |
noncoding | 27889 | C27889- | C | - | 30 | 30 | B.1.1 | 0.000544 |
noncoding | 27889 | C27889T | C | T | 29 | 29 | AY.25 | 0.000174 |
noncoding | 27889 | C27889T | C | T | 24 | 24 | B.1.177.77 | 0.017429 |
noncoding | 27889 | C27889T | C | T | 19 | 19 | AY.43 | 0.000084 |
noncoding | 27889 | C27889- | C | - | 17 | 17 | B | 0.002173 |
noncoding | 27889 | C27889T | C | T | 15 | 15 | AY.44 | 0.000091 |
noncoding | 27889 | C27889T | C | T | 14 | 14 | AY.38 | 0.00699 |
noncoding | 27889 | C27889T | C | T | 14 | 14 | B.1.1.306 | 0.006138 |
noncoding | 27889 | C27889- | C | - | 13 | 13 | B.1.2 | 0.000114 |
noncoding | 27889 | C27889T | C | T | 12 | 12 | AY.103 | 0.000075 |
noncoding | 27889 | C27889T | C | T | 12 | 12 | AY.27 | 0.000777 |
noncoding | 27889 | C27889G | C | G | 12 | 12 | AY.43 | 0.000053 |
noncoding | 27889 | C27889- | C | - | 12 | 12 | B.1 | 0.00011 |
noncoding | 27889 | C27889T | C | T | 11 | 11 | B.1.480 | 0.027363 |
noncoding | 27889 | C27889T | C | T | 11 | 11 | B.1.526 | 0.000259 |
noncoding | 27889 | C27889T | C | T | 10 | 10 | B.1.1.63 | 0.003858 |
noncoding | 27889 | C27889T | C | T | 10 | 10 | B.1.36 | 0.001459 |
noncoding | 27889 | C27889- | C | - | 9 | 9 | AY.103 | 0.000056 |
noncoding | 27889 | C27889T | C | T | 9 | 9 | AY.5 | 0.000186 |
noncoding | 27889 | C27889T | C | T | 9 | 9 | B.1.427 | 0.000454 |
noncoding | 27889 | C27889G | C | G | 9 | 9 | B.1.617.2 | 0.000034 |
noncoding | 27889 | C27889- | C | - | 8 | 8 | B.1.617.2 | 0.00003 |
noncoding | 27889 | C27889- | C | - | 6 | 6 | AY.29.1 | 0.001323 |
noncoding | 27889 | C27889- | C | - | 6 | 6 | AY.3 | 0.00006 |
noncoding | 27889 | C27889- | C | - | 6 | 6 | AY.43 | 0.000027 |
noncoding | 27889 | C27889T | C | T | 6 | 6 | AY.47 | 0.000187 |
noncoding | 27889 | C27889- | C | - | 6 | 6 | B.1.1.265 | 0.018927 |
noncoding | 27889 | C27889T | C | T | 6 | 6 | B.1.160 | 0.000187 |
noncoding | 27889 | C27889T | C | T | 6 | 6 | B.1.177.81 | 0.001136 |
noncoding | 27889 | C27889- | C | - | 6 | 6 | B.1.243.2 | 0.086957 |
noncoding | 27889 | C27889T | C | T | 6 | 6 | B.1.596 | 0.000523 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | AY.14 | 0.00044 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | AY.3 | 0.00005 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | AY.69 | 0.000933 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | B.1.1.241 | 0.010352 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | B.1.1.318 | 0.001509 |
noncoding | 27889 | C27889- | C | - | 5 | 5 | B.1.1.519 | 0.000199 |
noncoding | 27889 | C27889A | C | A | 5 | 5 | B.1.177 | 0.000066 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | B.1.243 | 0.000348 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | B.1.258 | 0.000333 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | B.1.525 | 0.000566 |
noncoding | 27889 | C27889- | C | - | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 27889 | C27889T | C | T | 5 | 5 | D.2 | 0.000375 |
noncoding | 27889 | C27889- | C | - | 4 | 4 | 0.222222 | |
noncoding | 27889 | C27889- | C | - | 4 | 4 | AT.1 | 0.020513 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | AV.1 | 0.020202 |
noncoding | 27889 | C27889- | C | - | 4 | 4 | AY.25 | 0.000024 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | AY.33 | 0.000267 |
noncoding | 27889 | C27889A | C | A | 4 | 4 | AY.4 | 0.000006 |
noncoding | 27889 | C27889G | C | G | 4 | 4 | AY.44 | 0.000024 |
noncoding | 27889 | C27889A | C | A | 4 | 4 | AY.44 | 0.000024 |
noncoding | 27889 | C27889- | C | - | 4 | 4 | AY.44 | 0.000024 |
noncoding | 27889 | C27889A | C | A | 4 | 4 | B.1.1 | 0.000073 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | B.1.221 | 0.000284 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | B.1.462 | 0.028986 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | B.1.509 | 0.003463 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | B.1.588 | 0.00364 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | B.4.7 | 0.040404 |
noncoding | 27889 | C27889T | C | T | 4 | 4 | N.5 | 0.007067 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AE.8 | 0.001467 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.100 | 0.000138 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.102 | 0.00008 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.119 | 0.000106 |
noncoding | 27889 | C27889- | C | - | 3 | 3 | AY.20 | 0.000117 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.26 | 0.000085 |
noncoding | 27889 | C27889- | C | - | 3 | 3 | AY.37 | 0.000948 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.39 | 0.000074 |
noncoding | 27889 | C27889A | C | A | 3 | 3 | AY.54 | 0.000286 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.59 | 0.001589 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | AY.9.1 | 0.000251 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B | 0.000383 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.1.222 | 0.000612 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.1.277 | 0.002276 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.1.33 | 0.001263 |
noncoding | 27889 | C27889A | C | A | 3 | 3 | B.1.1.519 | 0.000119 |
noncoding | 27889 | C27889A | C | A | 3 | 3 | B.1.1.7 | 0.000003 |
noncoding | 27889 | C27889- | C | - | 3 | 3 | B.1.126 | 0.003827 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.229 | 0.029126 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.240 | 0.000647 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.389 | 0.003006 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.400 | 0.001287 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.621 | 0.000266 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | B.1.621.1 | 0.001517 |
noncoding | 27889 | C27889A | C | A | 3 | 3 | P.1 | 0.000047 |
noncoding | 27889 | C27889- | C | - | 3 | 3 | P.1.15 | 0.000697 |
noncoding | 27889 | C27889T | C | T | 3 | 3 | Q.8 | 0.000495 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | A | 0.000774 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | A.2.2 | 0.003378 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | AD.2 | 0.000438 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.107 | 0.000932 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | AY.118 | 0.000125 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.120.1 | 0.000642 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.121 | 0.000271 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.19 | 0.002281 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.2 | 0.000712 |
noncoding | 27889 | C27889A | C | A | 2 | 2 | AY.43 | 0.000009 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.46.6 | 0.000144 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | AY.47 | 0.000062 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | AY.48 | 0.00093 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.6 | 0.000082 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.74 | 0.000231 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | AY.75 | 0.000112 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.1.214 | 0.000111 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.1.289 | 0.004167 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.1.316 | 0.00185 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.1.351 | 0.005587 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.1.411 | 0.029412 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.177.21 | 0.000153 |
noncoding | 27889 | C27889A | C | A | 2 | 2 | B.1.177.52 | 0.003515 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.177.6 | 0.001953 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.177.60 | 0.000437 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 27889 | C27889A | C | A | 2 | 2 | B.1.2 | 0.000018 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.258.11 | 0.000793 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.36.29 | 0.001035 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.369 | 0.00057 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.396 | 0.001411 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.538 | 0.016129 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.568 | 0.002222 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.576 | 0.001813 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.617.1 | 0.000258 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | B.1.637 | 0.000146 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | C.16 | 0.002121 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | C.37 | 0.000232 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | N.9 | 0.011905 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | P.1 | 0.000032 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | P.1.10 | 0.000539 |
noncoding | 27889 | C27889- | C | - | 2 | 2 | P.1.12 | 0.000968 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | P.1.13 | 0.001797 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | P.1.15 | 0.000465 |
noncoding | 27889 | C27889G | C | G | 2 | 2 | P.1.4 | 0.001953 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 27889 | C27889T | C | T | 2 | 2 | R.1 | 0.00018 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | A.2.5 | 0.000499 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | A.23.1 | 0.000704 |
noncoding | 27889 | C27889W | C | W | 1 | 1 | All | 0 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.10 | 0.00053 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.100 | 0.000046 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.108 | 0.001103 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.11 | 0.001339 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.110 | 0.000113 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.120 | 0.000037 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.120 | 0.000037 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.121 | 0.000135 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.19 | 0.00114 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.20 | 0.000039 |
noncoding | 27889 | C27889G | C | G | 1 | 1 | AY.23 | 0.00007 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.23 | 0.00007 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.26 | 0.000028 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.36 | 0.000148 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | AY.39 | 0.000025 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.39 | 0.000025 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 27889 | C27889G | C | G | 1 | 1 | AY.46 | 0.000104 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | AY.5 | 0.000021 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.55 | 0.000917 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.61 | 0.000105 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.62 | 0.000436 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.64 | 0.000595 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.67 | 0.000464 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.67 | 0.000464 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.7 | 0.000196 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.71 | 0.000475 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.74 | 0.000116 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.75 | 0.000056 |
noncoding | 27889 | C27889G | C | G | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.79 | 0.001211 |
noncoding | 27889 | C27889W | C | W | 1 | 1 | AY.84 | 0.000437 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.9 | 0.000068 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | AY.98 | 0.000079 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.99 | 0.001049 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | AY.99.1 | 0.001553 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.135 | 0.004695 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.171 | 0.003676 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.224 | 0.014286 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.282 | 0.011628 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.284 | 0.000107 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.354 | 0.004386 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.37 | 0.000193 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.397 | 0.002252 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.409 | 0.002833 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.416 | 0.000905 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.44 | 0.00241 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.526 | 0.003546 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.1.89 | 0.006061 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.105 | 0.009615 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.149 | 0.003425 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.160 | 0.000031 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.160.16 | 0.000929 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.177 | 0.000013 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.177.56 | 0.000668 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.177.63 | 0.002703 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.177.8 | 0.000752 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.177.83 | 0.001481 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.189 | 0.004292 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.192 | 0.009259 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.195 | 0.005025 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.241 | 0.000812 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.258 | 0.000067 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.258.3 | 0.001675 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.319 | 0.003049 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.351 | 0.00003 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.36.35 | 0.002604 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.361 | 0.001289 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.411 | 0.003704 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.425 | 0.002994 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 27889 | C27889A | C | A | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.503 | 0.002488 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.533 | 0.009615 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.564 | 0.000426 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.580 | 0.004065 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.582 | 0.000491 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.593 | 0.01087 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.599 | 0.00365 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | B.1.630 | 0.005236 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.633 | 0.041667 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.1.93 | 0.000934 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | B.58 | 0.010204 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | C.26 | 0.007353 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | C.36 | 0.000911 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | C.37 | 0.000116 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | L.3 | 0.003546 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 27889 | C27889T | C | T | 1 | 1 | P.1.8 | 0.004785 |
noncoding | 27889 | C27889- | C | - | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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