CoV-GLUE | Mutations | Mutation
CoV-GLUE Mutation: ORF = noncoding : CodonNum = 27888 & Codon = -
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
| ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
| noncoding | 27888 | A27888- | noncoding | A | - | 7369 | 7369 | 1 | 27888-27888 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
| ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
| noncoding | 27888 | A27888- | A | - | 7369 | 7369 | All | 0.001409 |
| noncoding | 27888 | A27888- | A | - | 3106 | 3106 | B.1.1.318 | 0.937236 |
| noncoding | 27888 | A27888- | A | - | 1161 | 1161 | AZ.2 | 0.953202 |
| noncoding | 27888 | A27888- | A | - | 1153 | 1153 | AZ.1 | 1 |
| noncoding | 27888 | A27888- | A | - | 618 | 618 | AZ.3 | 0.93921 |
| noncoding | 27888 | A27888- | A | - | 274 | 274 | AZ.4 | 0.919463 |
| noncoding | 27888 | A27888- | A | - | 231 | 231 | AZ.5 | 0.810526 |
| noncoding | 27888 | A27888- | A | - | 156 | 156 | B.1.1.222 | 0.031824 |
| noncoding | 27888 | A27888- | A | - | 110 | 110 | AZ.2.1 | 0.894309 |
| noncoding | 27888 | A27888- | A | - | 97 | 97 | AY.4 | 0.000151 |
| noncoding | 27888 | A27888- | A | - | 93 | 93 | AZ.6 | 0.781513 |
| noncoding | 27888 | A27888- | A | - | 56 | 56 | B.1.1.7 | 0.00005 |
| noncoding | 27888 | A27888- | A | - | 48 | 48 | B.1.243 | 0.00334 |
| noncoding | 27888 | A27888- | A | - | 37 | 37 | AY.29 | 0.000584 |
| noncoding | 27888 | A27888- | A | - | 30 | 30 | B.1.1 | 0.000544 |
| noncoding | 27888 | A27888- | A | - | 17 | 17 | B | 0.002173 |
| noncoding | 27888 | A27888- | A | - | 13 | 13 | B.1.2 | 0.000114 |
| noncoding | 27888 | A27888- | A | - | 12 | 12 | B.1 | 0.00011 |
| noncoding | 27888 | A27888- | A | - | 9 | 9 | AY.103 | 0.000056 |
| noncoding | 27888 | A27888- | A | - | 7 | 7 | B.1.617.2 | 0.000026 |
| noncoding | 27888 | A27888- | A | - | 6 | 6 | AY.29.1 | 0.001323 |
| noncoding | 27888 | A27888- | A | - | 6 | 6 | AY.3 | 0.00006 |
| noncoding | 27888 | A27888- | A | - | 6 | 6 | AY.43 | 0.000027 |
| noncoding | 27888 | A27888- | A | - | 6 | 6 | B.1.1.265 | 0.018927 |
| noncoding | 27888 | A27888- | A | - | 6 | 6 | B.1.243.2 | 0.086957 |
| noncoding | 27888 | A27888- | A | - | 5 | 5 | B.1.1.519 | 0.000199 |
| noncoding | 27888 | A27888- | A | - | 4 | 4 | 0.222222 | |
| noncoding | 27888 | A27888- | A | - | 4 | 4 | AT.1 | 0.020513 |
| noncoding | 27888 | A27888- | A | - | 4 | 4 | AY.25 | 0.000024 |
| noncoding | 27888 | A27888- | A | - | 4 | 4 | AY.44 | 0.000024 |
| noncoding | 27888 | A27888- | A | - | 4 | 4 | B.1.526 | 0.000094 |
| noncoding | 27888 | A27888- | A | - | 3 | 3 | AY.20 | 0.000117 |
| noncoding | 27888 | A27888- | A | - | 3 | 3 | AY.37 | 0.000948 |
| noncoding | 27888 | A27888- | A | - | 3 | 3 | B.1.126 | 0.003827 |
| noncoding | 27888 | A27888- | A | - | 3 | 3 | P.1.15 | 0.000697 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | A.2.2 | 0.003378 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | AD.2 | 0.000438 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | AY.118 | 0.000125 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | AY.47 | 0.000062 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | AY.48 | 0.00093 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.1.214 | 0.000111 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.1.306 | 0.000877 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.351 | 0.000059 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.427 | 0.000101 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.568 | 0.002222 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.576 | 0.001813 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | B.1.621 | 0.000177 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | P.1 | 0.000032 |
| noncoding | 27888 | A27888- | A | - | 2 | 2 | P.1.12 | 0.000968 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | A.2.5 | 0.000499 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | A.23.1 | 0.000704 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.100 | 0.000046 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.108 | 0.001103 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.117 | 0.000085 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.120 | 0.000037 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.121 | 0.000135 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.19 | 0.00114 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.23 | 0.00007 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.26 | 0.000028 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.36 | 0.000148 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.39 | 0.000025 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.4.2 | 0.000022 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.4.5 | 0.000107 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.55 | 0.000917 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.61 | 0.000105 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.67 | 0.000464 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.74 | 0.000116 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.75 | 0.000056 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.99 | 0.001049 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | AY.99.1 | 0.001553 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.216 | 0.00089 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.284 | 0.000107 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.354 | 0.004386 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.37 | 0.000193 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.44 | 0.00241 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.1.464 | 0.001473 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.160 | 0.000031 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.177 | 0.000013 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.177.54 | 0.000606 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.177.63 | 0.002703 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.177.7 | 0.000165 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.177.83 | 0.001481 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.195 | 0.005025 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.258 | 0.000067 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.369 | 0.000285 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.429 | 0.000024 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.470 | 0.001404 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.582 | 0.000491 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.596 | 0.000087 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | B.1.630 | 0.005236 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | C.26 | 0.007353 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | C.37 | 0.000116 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | P.1.1 | 0.000318 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | P.1.14 | 0.000048 |
| noncoding | 27888 | A27888- | A | - | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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