CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 27393

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding27393C27393TnoncodingCT1536115361127393-27393
noncoding27393C27393-noncodingC-995995127393-27393
noncoding27393C27393AnoncodingCA4040127393-27393
noncoding27393C27393GnoncodingCG88127393-27393
noncoding27393C27393BnoncodingCB22127393-27393
noncoding27393C27393KnoncodingCK22127393-27393

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding27393C27393TCT1536115361All0.002938
noncoding27393C27393TCT38513851AY.7.10.434013
noncoding27393C27393TCT27022702B.1.1.70.002419
noncoding27393C27393TCT20102010AY.200.078119
noncoding27393C27393TCT12411241AY.40.001932
noncoding27393C27393-C-995995All0.00019
noncoding27393C27393TCT724724B.1.617.20.002726
noncoding27393C27393TCT639639AY.430.002831
noncoding27393C27393TCT451451B.1.5260.010601
noncoding27393C27393-C-418418B.1.1.70.000374
noncoding27393C27393TCT321321AY.250.001931
noncoding27393C27393TCT316316AY.1030.001962
noncoding27393C27393TCT196196AY.9.20.007199
noncoding27393C27393TCT185185AY.440.001126
noncoding27393C27393TCT185185P.10.002914
noncoding27393C27393-C-161161AY.40.000251
noncoding27393C27393TCT145145AY.50.002994
noncoding27393C27393TCT134134AY.1020.003553
noncoding27393C27393TCT105105AY.390.002595
noncoding27393C27393TCT9191B.1.20.000801
noncoding27393C27393TCT8787AY.460.009055
noncoding27393C27393TCT8585AY.30.000845
noncoding27393C27393TCT8383B.1.4290.001953
noncoding27393C27393TCT7575AY.98.10.003632
noncoding27393C27393TCT6767AY.1000.003082
noncoding27393C27393TCT6565B.10.000595
noncoding27393C27393TCT5656B.1.3510.001665
noncoding27393C27393TCT5151B.1.1770.000672
noncoding27393C27393TCT4848AY.1200.001785
noncoding27393C27393TCT4545AY.9.10.003768
noncoding27393C27393TCT4242B.1.5250.004753
noncoding27393C27393ACA4040All0.000008
noncoding27393C27393TCT3636B.1.10.000653
noncoding27393C27393TCT3535AY.740.004048
noncoding27393C27393TCT3434B.1.1600.00106
noncoding27393C27393-C-3333B.1.617.20.000124
noncoding27393C27393TCT3131AY.470.000964
noncoding27393C27393TCT3030AY.290.000473
noncoding27393C27393TCT2929AY.160.01101
noncoding27393C27393-C-2828AY.440.00017
noncoding27393C27393TCT2727AY.1170.002282
noncoding27393C27393TCT2727B.1.2210.001918
noncoding27393C27393TCT2727P.1.10.008577
noncoding27393C27393-C-2626AY.1200.000967
noncoding27393C27393TCT2626AY.230.001813
noncoding27393C27393TCT2525AY.260.000708
noncoding27393C27393-C-2525AY.30.000249
noncoding27393C27393TCT2323AY.330.001536
noncoding27393C27393-C-2222AY.250.000132
noncoding27393C27393TCT2222AY.4.20.000477
noncoding27393C27393TCT2222AY.750.001232
noncoding27393C27393TCT2121AY.420.000845
noncoding27393C27393TCT2121AY.620.00915
noncoding27393C27393TCT2121AY.830.036207
noncoding27393C27393TCT2020AY.1190.000706
noncoding27393C27393TCT2020B.1.1.2140.001109
noncoding27393C27393TCT2020B.1.1.5190.000794
noncoding27393C27393TCT1919AY.1130.002705
noncoding27393C27393TCT1818AY.1060.006028
noncoding27393C27393TCT1818AY.60.00074
noncoding27393C27393TCT1818AY.70.003528
noncoding27393C27393TCT1818B.1.5170.007686
noncoding27393C27393-C-1818P.10.000284
noncoding27393C27393TCT1717B.1.5960.001481
noncoding27393C27393TCT1616AY.980.001264
noncoding27393C27393TCT1616B.1.177.600.003495
noncoding27393C27393TCT1515AY.1090.011095
noncoding27393C27393TCT1515AY.900.010267
noncoding27393C27393TCT1515C.370.001741
noncoding27393C27393TCT1414AY.360.002075
noncoding27393C27393-C-1414AY.430.000062
noncoding27393C27393TCT1414AY.450.001704
noncoding27393C27393TCT1414Q.10.001769
noncoding27393C27393-C-1313AY.1030.000081
noncoding27393C27393TCT1313AY.1180.000814
noncoding27393C27393TCT1313AY.39.10.000515
noncoding27393C27393TCT1212AY.46.60.000866
noncoding27393C27393-C-1212B.1.4080.04428
noncoding27393C27393-C-1212C.370.001393
noncoding27393C27393-C-1111AY.240.004741
noncoding27393C27393-C-1111AY.390.000272
noncoding27393C27393TCT1111B.1.177.120.001669
noncoding27393C27393TCT1111B.1.770.5
noncoding27393C27393TCT1010AY.340.00097
noncoding27393C27393ACA1010AY.40.000016
noncoding27393C27393TCT1010B.1.2340.001319
noncoding27393C27393TCT1010B.1.4270.000505
noncoding27393C27393-C-1010B.1.5260.000235
noncoding27393C27393TCT99B.1.177.210.000688
noncoding27393C27393TCT99B.1.2580.000599
noncoding27393C27393GCG88All0.000002
noncoding27393C27393TCT88AY.1210.001083
noncoding27393C27393TCT88AY.270.000518
noncoding27393C27393-C-88AY.290.000126
noncoding27393C27393TCT88AY.700.001668
noncoding27393C27393TCT88AY.90.000541
noncoding27393C27393TCT88AY.99.20.000737
noncoding27393C27393TCT88C.160.008484
noncoding27393C27393TCT88P.1.40.007812
noncoding27393C27393TCT77AC.10.259259
noncoding27393C27393TCT77AY.1160.002007
noncoding27393C27393TCT77AY.320.003727
noncoding27393C27393TCT77AY.4.30.005892
noncoding27393C27393-C-77AY.770.007892
noncoding27393C27393TCT77AY.940.003099
noncoding27393C27393-C-77B.1.1.2140.000388
noncoding27393C27393TCT77B.1.617.10.000903
noncoding27393C27393TCT77B.1.6210.00062
noncoding27393C27393TCT77P.1.120.003388
noncoding27393C27393TCT66AY.140.000528
noncoding27393C27393TCT66AY.350.001398
noncoding27393C27393TCT66AY.370.001896
noncoding27393C27393TCT66AY.410.001764
noncoding27393C27393TCT66AY.46.40.000987
noncoding27393C27393TCT66AY.5.40.00166
noncoding27393C27393TCT66AY.610.000629
noncoding27393C27393TCT66B.1.1.2220.001224
noncoding27393C27393-C-66B.1.1.2840.000644
noncoding27393C27393TCT66B.1.177.860.001101
noncoding27393C27393-C-66B.1.20.000053
noncoding27393C27393TCT66B.1.2430.000418
noncoding27393C27393TCT66D.20.00045
noncoding27393C27393TCT66Q.80.000989
noncoding27393C27393TCT55AY.3.10.000426
noncoding27393C27393-C-55AY.470.000156
noncoding27393C27393TCT55AY.75.10.000902
noncoding27393C27393-C-55B.10.000046
noncoding27393C27393TCT55B.1.1.2630.007788
noncoding27393C27393TCT55B.1.1.3060.002192
noncoding27393C27393ACA55B.1.6200.00473
noncoding27393C27393TCT55B.1.6370.000365
noncoding27393C27393-C-44AY.1000.000184
noncoding27393C27393TCT44AY.1080.00441
noncoding27393C27393TCT44AY.120.001264
noncoding27393C27393TCT44AY.4.40.001637
noncoding27393C27393-C-44AY.4.50.00043
noncoding27393C27393-C-44AY.46.30.003735
noncoding27393C27393TCT44AY.840.00175
noncoding27393C27393-C-44B.1.10.000073
noncoding27393C27393ACA44B.1.177.210.000306
noncoding27393C27393TCT44B.1.36.170.001976
noncoding27393C27393TCT44B.1.4430.018692
noncoding27393C27393TCT44B.1.5610.001588
noncoding27393C27393-C-44B.1.6370.000292
noncoding27393C27393TCT44C.36.30.002269
noncoding27393C27393TCT44P.1.140.000191
noncoding27393C27393TCT44P.1.60.007782
noncoding27393C27393TCT33A0.001161
noncoding27393C27393TCT33AU.20.007264
noncoding27393C27393ACA33AY.1030.000019
noncoding27393C27393-C-33AY.4.20.000065
noncoding27393C27393TCT33AY.4.50.000322
noncoding27393C27393-C-33AY.420.000121
noncoding27393C27393-C-33AY.60.000123
noncoding27393C27393-C-33AY.660.003209
noncoding27393C27393-C-33AY.70.000588
noncoding27393C27393-C-33AY.7.20.001678
noncoding27393C27393TCT33AY.790.003632
noncoding27393C27393TCT33AY.820.004071
noncoding27393C27393-C-33AY.980.000237
noncoding27393C27393TCT33B.1.1.10.00098
noncoding27393C27393TCT33B.1.1.3110.001074
noncoding27393C27393TCT33B.1.1.500.002037
noncoding27393C27393TCT33B.1.1.630.001157
noncoding27393C27393-C-33B.1.1390.002199
noncoding27393C27393-C-33B.1.177.210.000229
noncoding27393C27393TCT33B.1.177.580.003995
noncoding27393C27393TCT33B.1.220.003953
noncoding27393C27393-C-33B.1.2340.000396
noncoding27393C27393TCT33B.1.2400.000647
noncoding27393C27393TCT33B.1.2470.044776
noncoding27393C27393TCT33B.1.258.170.000312
noncoding27393C27393TCT33B.1.3110.000824
noncoding27393C27393TCT33B.1.3200.003736
noncoding27393C27393-C-33B.1.360.000438
noncoding27393C27393TCT33B.1.360.000438
noncoding27393C27393-C-33B.1.36.10.003421
noncoding27393C27393TCT33B.1.36.310.005254
noncoding27393C27393TCT33B.1.438.10.000322
noncoding27393C27393TCT33B.1.4700.004213
noncoding27393C27393TCT33B.1.5950.000783
noncoding27393C27393TCT33P.20.00056
noncoding27393C27393-C-33Q.80.000495
noncoding27393C27393KCK220.111111
noncoding27393C27393TCT220.111111
noncoding27393C27393BCB220.111111
noncoding27393C27393TCT22A.270.003311
noncoding27393C27393BCB22All0
noncoding27393C27393KCK22All0
noncoding27393C27393TCT22AY.1100.000225
noncoding27393C27393TCT22AY.116.10.000623
noncoding27393C27393-C-22AY.1180.000125
noncoding27393C27393TCT22AY.120.10.000642
noncoding27393C27393TCT22AY.120.2.10.000997
noncoding27393C27393TCT22AY.130.000322
noncoding27393C27393TCT22AY.16.10.00094
noncoding27393C27393TCT22AY.180.020202
noncoding27393C27393TCT22AY.20.000712
noncoding27393C27393-C-22AY.260.000057
noncoding27393C27393-C-22AY.330.000134
noncoding27393C27393TCT22AY.4.10.001475
noncoding27393C27393TCT22AY.4.2.10.000298
noncoding27393C27393TCT22AY.480.00093
noncoding27393C27393TCT22AY.5.10.007519
noncoding27393C27393TCT22AY.5.30.000675
noncoding27393C27393ACA22AY.5.40.000553
noncoding27393C27393TCT22AY.540.000191
noncoding27393C27393TCT22AY.590.001059
noncoding27393C27393TCT22AY.650.001066
noncoding27393C27393TCT22AY.670.000929
noncoding27393C27393TCT22AY.690.000373
noncoding27393C27393TCT22AY.710.00095
noncoding27393C27393-C-22AY.840.000875
noncoding27393C27393TCT22AY.850.000854
noncoding27393C27393TCT22AY.880.001768
noncoding27393C27393TCT22AY.920.000575
noncoding27393C27393-C-22B.1.1.1890.003026
noncoding27393C27393TCT22B.1.1.280.000622
noncoding27393C27393TCT22B.1.1.2840.000215
noncoding27393C27393TCT22B.1.1.3680.006173
noncoding27393C27393TCT22B.1.1.410.012658
noncoding27393C27393ACA22B.1.1.70.000002
noncoding27393C27393TCT22B.1.177.160.001329
noncoding27393C27393TCT22B.1.177.60.001953
noncoding27393C27393TCT22B.1.177.730.001133
noncoding27393C27393TCT22B.1.177.830.002963
noncoding27393C27393TCT22B.1.177.840.013333
noncoding27393C27393-C-22B.1.177.860.000367
noncoding27393C27393GCG22B.1.20.000018
noncoding27393C27393TCT22B.1.214.20.001199
noncoding27393C27393-C-22B.1.258.110.000793
noncoding27393C27393-C-22B.1.3110.000549
noncoding27393C27393TCT22B.1.351.30.001753
noncoding27393C27393TCT22B.1.351.50.001199
noncoding27393C27393TCT22B.1.36.340.042553
noncoding27393C27393TCT22B.1.3670.001585
noncoding27393C27393TCT22B.1.4280.002041
noncoding27393C27393TCT22B.1.466.20.000782
noncoding27393C27393TCT22B.1.4740.003802
noncoding27393C27393TCT22B.1.5750.000607
noncoding27393C27393TCT22B.1.575.10.004878
noncoding27393C27393ACA22B.1.617.20.000008
noncoding27393C27393-C-22B.1.6210.000177
noncoding27393C27393TCT22B.1.621.10.001012
noncoding27393C27393TCT22B.400.000729
noncoding27393C27393TCT22L.30.007092
noncoding27393C27393TCT22P.1.70.000639
noncoding27393C27393TCT22Q.30.00029
noncoding27393C27393TCT22R.10.00018
noncoding27393C27393TCT11A.2.20.001689
noncoding27393C27393-C-11A.280.002646
noncoding27393C27393TCT11A.280.002646
noncoding27393C27393TCT11AD.20.000219
noncoding27393C27393TCT11AH.30.003802
noncoding27393C27393TCT11AY.10.000396
noncoding27393C27393TCT11AY.1010.00049
noncoding27393C27393ACA11AY.1020.000027
noncoding27393C27393-C-11AY.1020.000027
noncoding27393C27393TCT11AY.1040.001984
noncoding27393C27393-C-11AY.1060.000335
noncoding27393C27393-C-11AY.1070.000466
noncoding27393C27393-C-11AY.1080.001103
noncoding27393C27393-C-11AY.1130.000142
noncoding27393C27393-C-11AY.1140.000231
noncoding27393C27393TCT11AY.1140.000231
noncoding27393C27393TCT11AY.1150.005208
noncoding27393C27393-C-11AY.1170.000085
noncoding27393C27393TCT11AY.120.20.001285
noncoding27393C27393TCT11AY.150.002222
noncoding27393C27393TCT11AY.170.008197
noncoding27393C27393TCT11AY.190.00114
noncoding27393C27393-C-11AY.200.000039
noncoding27393C27393TCT11AY.23.10.000417
noncoding27393C27393TCT11AY.240.000431
noncoding27393C27393TCT11AY.280.00189
noncoding27393C27393GCG11AY.290.000016
noncoding27393C27393-C-11AY.29.10.000221
noncoding27393C27393-C-11AY.320.000532
noncoding27393C27393-C-11AY.340.000097
noncoding27393C27393TCT11AY.34.10.00051
noncoding27393C27393-C-11AY.39.10.00004
noncoding27393C27393GCG11AY.4.20.000022
noncoding27393C27393GCG11AY.430.000004
noncoding27393C27393ACA11AY.430.000004
noncoding27393C27393ACA11AY.440.000006
noncoding27393C27393-C-11AY.460.000104
noncoding27393C27393ACA11AY.460.000104
noncoding27393C27393TCT11AY.46.10.001027
noncoding27393C27393TCT11AY.46.20.000635
noncoding27393C27393-C-11AY.46.40.000165
noncoding27393C27393TCT11AY.46.50.000198
noncoding27393C27393-C-11AY.46.50.000198
noncoding27393C27393TCT11AY.490.003195
noncoding27393C27393GCG11AY.5.40.000277
noncoding27393C27393TCT11AY.500.000799
noncoding27393C27393-C-11AY.540.000095
noncoding27393C27393TCT11AY.560.001605
noncoding27393C27393TCT11AY.630.000387
noncoding27393C27393TCT11AY.640.000595
noncoding27393C27393-C-11AY.7.10.000113
noncoding27393C27393TCT11AY.7.20.000559
noncoding27393C27393-C-11AY.730.000665
noncoding27393C27393ACA11AY.740.000116
noncoding27393C27393-C-11AY.750.000056
noncoding27393C27393TCT11AY.770.001127
noncoding27393C27393-C-11AY.790.001211
noncoding27393C27393GCG11AY.790.001211
noncoding27393C27393-C-11AY.850.000427
noncoding27393C27393TCT11AY.860.00083
noncoding27393C27393TCT11AY.870.000833
noncoding27393C27393-C-11AY.9.10.000084
noncoding27393C27393-C-11AY.9.20.000037
noncoding27393C27393TCT11AY.910.00073
noncoding27393C27393TCT11AY.930.000273
noncoding27393C27393-C-11AY.940.000443
noncoding27393C27393TCT11AY.950.000761
noncoding27393C27393TCT11AY.970.001701
noncoding27393C27393-C-11AY.98.10.000048
noncoding27393C27393TCT11AY.990.001049
noncoding27393C27393-C-11AY.990.001049
noncoding27393C27393-C-11B0.000128
noncoding27393C27393TCT11B0.000128
noncoding27393C27393ACA11B.10.000009
noncoding27393C27393TCT11B.1.1.1280.007092
noncoding27393C27393TCT11B.1.1.1410.002012
noncoding27393C27393-C-11B.1.1.2070.001182
noncoding27393C27393TCT11B.1.1.2160.00089
noncoding27393C27393TCT11B.1.1.250.000569
noncoding27393C27393-C-11B.1.1.280.000311
noncoding27393C27393-C-11B.1.1.3110.000358
noncoding27393C27393TCT11B.1.1.3180.000302
noncoding27393C27393TCT11B.1.1.330.000421
noncoding27393C27393-C-11B.1.1.330.000421
noncoding27393C27393TCT11B.1.1.3480.000796
noncoding27393C27393TCT11B.1.1.4160.000905
noncoding27393C27393TCT11B.1.1.4480.002033
noncoding27393C27393-C-11B.1.1.5190.00004
noncoding27393C27393TCT11B.1.1.5250.005464
noncoding27393C27393-C-11B.1.1.630.000386
noncoding27393C27393ACA11B.1.1.630.000386
noncoding27393C27393TCT11B.1.1110.001175
noncoding27393C27393-C-11B.1.1150.021739
noncoding27393C27393-C-11B.1.1600.000031
noncoding27393C27393TCT11B.1.160.160.000929
noncoding27393C27393TCT11B.1.160.280.002924
noncoding27393C27393-C-11B.1.1610.017241
noncoding27393C27393-C-11B.1.1770.000013
noncoding27393C27393TCT11B.1.177.420.000894
noncoding27393C27393TCT11B.1.177.440.000519
noncoding27393C27393TCT11B.1.177.50.001242
noncoding27393C27393TCT11B.1.177.570.000281
noncoding27393C27393TCT11B.1.177.760.002494
noncoding27393C27393TCT11B.1.177.770.000726
noncoding27393C27393-C-11B.1.177.80.000752
noncoding27393C27393TCT11B.1.177.810.000189
noncoding27393C27393-C-11B.1.177.810.000189
noncoding27393C27393TCT11B.1.177.820.000477
noncoding27393C27393TCT11B.1.2130.014925
noncoding27393C27393TCT11B.1.2320.000537
noncoding27393C27393TCT11B.1.2360.002053
noncoding27393C27393-C-11B.1.2430.00007
noncoding27393C27393ACA11B.1.2580.000067
noncoding27393C27393TCT11B.1.2790.000514
noncoding27393C27393TCT11B.1.2810.021739
noncoding27393C27393TCT11B.1.3240.001605
noncoding27393C27393TCT11B.1.3290.000608
noncoding27393C27393-C-11B.1.3400.004292
noncoding27393C27393-C-11B.1.3510.00003
noncoding27393C27393TCT11B.1.36.220.001208
noncoding27393C27393TCT11B.1.36.260.002857
noncoding27393C27393TCT11B.1.36.290.000517
noncoding27393C27393TCT11B.1.36.390.002217
noncoding27393C27393TCT11B.1.3620.001541
noncoding27393C27393TCT11B.1.3690.000285
noncoding27393C27393-C-11B.1.3810.007812
noncoding27393C27393ACA11B.1.3980.002976
noncoding27393C27393TCT11B.1.4080.00369
noncoding27393C27393TCT11B.1.4090.000781
noncoding27393C27393-C-11B.1.4160.001269
noncoding27393C27393-C-11B.1.4270.00005
noncoding27393C27393-C-11B.1.4290.000024
noncoding27393C27393-C-11B.1.466.20.000391
noncoding27393C27393TCT11B.1.4680.005714
noncoding27393C27393-C-11B.1.4680.005714
noncoding27393C27393-C-11B.1.4700.001404
noncoding27393C27393TCT11B.1.5030.002488
noncoding27393C27393TCT11B.1.5090.000866
noncoding27393C27393-C-11B.1.5250.000113
noncoding27393C27393TCT11B.1.5510.00129
noncoding27393C27393TCT11B.1.5640.000426
noncoding27393C27393TCT11B.1.5680.001111
noncoding27393C27393-C-11B.1.5770.000687
noncoding27393C27393-C-11B.1.5960.000087
noncoding27393C27393GCG11B.1.617.20.000004
noncoding27393C27393-C-11B.1.617.30.002985
noncoding27393C27393TCT11B.1.6180.004032
noncoding27393C27393TCT11B.1.6190.000871
noncoding27393C27393-C-11B.1.6200.000946
noncoding27393C27393ACA11B.1.6210.000089
noncoding27393C27393TCT11B.1.6230.000536
noncoding27393C27393TCT11B.1.6280.000352
noncoding27393C27393-C-11B.1.6290.013333
noncoding27393C27393-C-11B.1.6300.005236
noncoding27393C27393TCT11B.1.6360.006711
noncoding27393C27393ACA11B.1.6370.000073
noncoding27393C27393TCT11B.1.930.000934
noncoding27393C27393TCT11B.280.003279
noncoding27393C27393TCT11B.40.002208
noncoding27393C27393TCT11C.1.20.004255
noncoding27393C27393TCT11C.360.000911
noncoding27393C27393TCT11C.400.027778
noncoding27393C27393-C-11D.20.000075
noncoding27393C27393ACA11P.10.000016
noncoding27393C27393TCT11P.1.130.000898
noncoding27393C27393TCT11P.1.150.000232
noncoding27393C27393TCT11P.1.160.000374
noncoding27393C27393TCT11P.1.20.001156
noncoding27393C27393TCT11P.1.80.004785
noncoding27393C27393TCT11P.30.001595
noncoding27393C27393TCT11Q.20.000613
noncoding27393C27393-C-11Q.30.000145
noncoding27393C27393TCT11Q.60.006623
noncoding27393C27393-C-11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.