CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 26507

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding26507A26507GnoncodingAG194194126507-26507
noncoding26507A26507TnoncodingAT6161126507-26507
noncoding26507A26507CnoncodingAC6060126507-26507
noncoding26507A26507-noncodingA-4343126507-26507

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding26507A26507GAG194194All0.000037
noncoding26507A26507GAG6969B.1.243.21
noncoding26507A26507TAT6161All0.000012
noncoding26507A26507CAC6060All0.000011
noncoding26507A26507-A-4343All0.000008
noncoding26507A26507GAG2020AY.1030.000124
noncoding26507A26507GAG1717AY.1060.005693
noncoding26507A26507CAC1717AY.40.000026
noncoding26507A26507TAT1717B.10.000156
noncoding26507A26507CAC1616B.1.1.70.000014
noncoding26507A26507GAG1212B.1.20.000106
noncoding26507A26507GAG1111AY.50.000227
noncoding26507A26507GAG1010B.1.1.70.000009
noncoding26507A26507TAT99B.1.617.20.000034
noncoding26507A26507-A-77B.10.000064
noncoding26507A26507GAG66AY.850.002563
noncoding26507A26507GAG66B.10.000055
noncoding26507A26507CAC66B.1.617.20.000023
noncoding26507A26507TAT66Q.10.000758
noncoding26507A26507GAG55AY.40.000008
noncoding26507A26507-A-44B.1.1260.005102
noncoding26507A26507CAC44B.1.20.000035
noncoding26507A26507GAG44B.1.2210.000284
noncoding26507A26507TAT44B.1.5820.001963
noncoding26507A26507-A-33AY.250.000018
noncoding26507A26507GAG33AY.250.000018
noncoding26507A26507GAG33AY.290.000047
noncoding26507A26507CAC33AY.30.00003
noncoding26507A26507TAT33AY.430.000013
noncoding26507A26507TAT33AY.460.000312
noncoding26507A26507-A-33B.1.617.20.000011
noncoding26507A26507TAT33P.10.000047
noncoding26507A26507-A-33P.10.000047
noncoding26507A26507-A-220.111111
noncoding26507A26507TAT22AY.30.00002
noncoding26507A26507TAT22AY.40.000003
noncoding26507A26507-A-22AY.40.000003
noncoding26507A26507GAG22AY.440.000012
noncoding26507A26507CAC22AY.50.000041
noncoding26507A26507GAG22B.1.1.3480.001592
noncoding26507A26507GAG22B.1.1.370.000386
noncoding26507A26507TAT22B.1.1.70.000002
noncoding26507A26507-A-22B.1.1.70.000002
noncoding26507A26507TAT22B.1.1600.000062
noncoding26507A26507TAT22B.1.258.20.009009
noncoding26507A26507GAG22B.1.36.260.005714
noncoding26507A26507GAG22B.1.617.20.000008
noncoding26507A26507-A-22P.1.150.000465
noncoding26507A26507CAC11A.270.001656
noncoding26507A26507-A-11AY.1000.000046
noncoding26507A26507TAT11AY.1030.000006
noncoding26507A26507-A-11AY.1080.001103
noncoding26507A26507-A-11AY.1180.000063
noncoding26507A26507CAC11AY.1180.000063
noncoding26507A26507-A-11AY.1190.000035
noncoding26507A26507-A-11AY.1200.000037
noncoding26507A26507TAT11AY.1200.000037
noncoding26507A26507TAT11AY.1210.000135
noncoding26507A26507GAG11AY.230.00007
noncoding26507A26507CAC11AY.250.000006
noncoding26507A26507TAT11AY.290.000016
noncoding26507A26507GAG11AY.330.000067
noncoding26507A26507-A-11AY.430.000004
noncoding26507A26507CAC11AY.430.000004
noncoding26507A26507CAC11AY.440.000006
noncoding26507A26507CAC11AY.460.000104
noncoding26507A26507GAG11AY.460.000104
noncoding26507A26507-A-11AY.46.60.000072
noncoding26507A26507GAG11AY.60.000041
noncoding26507A26507GAG11AY.610.000105
noncoding26507A26507-A-11AY.680.000274
noncoding26507A26507-A-11B.1.10.000018
noncoding26507A26507CAC11B.1.10.000018
noncoding26507A26507-A-11B.1.1.2880.001916
noncoding26507A26507CAC11B.1.1.2940.001266
noncoding26507A26507GAG11B.1.1.3110.000358
noncoding26507A26507TAT11B.1.1.3180.000302
noncoding26507A26507CAC11B.1.1.370.000193
noncoding26507A26507GAG11B.1.1.4090.002833
noncoding26507A26507GAG11B.1.1770.000013
noncoding26507A26507TAT11B.1.177.570.000281
noncoding26507A26507GAG11B.1.2430.00007
noncoding26507A26507GAG11B.1.2580.000067
noncoding26507A26507GAG11B.1.2790.000514
noncoding26507A26507GAG11B.1.3620.001541
noncoding26507A26507GAG11B.1.4270.00005
noncoding26507A26507-A-11B.1.4270.00005
noncoding26507A26507CAC11B.1.438.10.000107
noncoding26507A26507GAG11B.1.5090.000866
noncoding26507A26507GAG11B.1.5250.000113
noncoding26507A26507GAG11B.1.5460.003704
noncoding26507A26507CAC11B.1.5960.000087
noncoding26507A26507GAG11B.1.5960.000087
noncoding26507A26507-A-11B.1.617.10.000129
noncoding26507A26507-A-11B.1.6380.052632
noncoding26507A26507GAG11D.20.000075
noncoding26507A26507CAC11D.20.000075
noncoding26507A26507-A-11P.1.130.000898
noncoding26507A26507-A-11P.1.70.000319

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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