CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 26504

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding26504T26504CnoncodingTC848848126504-26504
noncoding26504T26504AnoncodingTA316316126504-26504
noncoding26504T26504-noncodingT-5050126504-26504
noncoding26504T26504GnoncodingTG1717126504-26504

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding26504T26504CTC848848All0.000162
noncoding26504T26504CTC664664AP.10.996997
noncoding26504T26504ATA316316All0.00006
noncoding26504T26504ATA9393AY.430.000412
noncoding26504T26504-T-5050All0.00001
noncoding26504T26504ATA4949B.1.617.20.000185
noncoding26504T26504ATA2929B.1.20.000255
noncoding26504T26504CTC2727B.1.36.170.01334
noncoding26504T26504ATA2525AY.1030.000155
noncoding26504T26504CTC1919AY.3.10.00162
noncoding26504T26504CTC1818B.1.1.70.000016
noncoding26504T26504GTG1717All0.000003
noncoding26504T26504CTC1616B.10.000147
noncoding26504T26504ATA1414B.1.1.70.000013
noncoding26504T26504CTC1111AY.250.000066
noncoding26504T26504ATA1111AY.440.000067
noncoding26504T26504CTC1111B.1.20.000097
noncoding26504T26504ATA1010AY.250.00006
noncoding26504T26504CTC1010AY.430.000044
noncoding26504T26504CTC1010B.1.617.20.000038
noncoding26504T26504ATA99AY.40.000014
noncoding26504T26504CTC88AY.40.000012
noncoding26504T26504CTC77AY.200.000272
noncoding26504T26504-T-77B.10.000064
noncoding26504T26504-T-66AY.40.000009
noncoding26504T26504ATA66AY.60.000247
noncoding26504T26504ATA66C.370.000696
noncoding26504T26504ATA55AY.580.004537
noncoding26504T26504ATA55AY.920.001436
noncoding26504T26504ATA44AY.30.00004
noncoding26504T26504ATA44AY.5.10.015038
noncoding26504T26504CTC44AY.940.001771
noncoding26504T26504CTC44B.1.1.3160.0037
noncoding26504T26504-T-44B.1.1260.005102
noncoding26504T26504ATA44B.1.5260.000094
noncoding26504T26504ATA44B.1.621.10.002023
noncoding26504T26504CTC33AY.1020.00008
noncoding26504T26504-T-33AY.250.000018
noncoding26504T26504CTC33AY.290.000047
noncoding26504T26504ATA33AY.340.000291
noncoding26504T26504CTC33AY.440.000018
noncoding26504T26504GTG33B.1.1.70.000003
noncoding26504T26504-T-33B.1.617.20.000011
noncoding26504T26504-T-33P.10.000047
noncoding26504T26504-T-220.111111
noncoding26504T26504GTG22AY.1190.000071
noncoding26504T26504ATA22AY.230.000139
noncoding26504T26504GTG22AY.270.000129
noncoding26504T26504CTC22AY.270.000129
noncoding26504T26504-T-22AY.30.00002
noncoding26504T26504ATA22AY.390.000049
noncoding26504T26504-T-22AY.430.000009
noncoding26504T26504CTC22AY.750.000112
noncoding26504T26504GTG22AY.760.009662
noncoding26504T26504ATA22B.10.000018
noncoding26504T26504ATA22B.1.1.280.000622
noncoding26504T26504CTC22B.1.1770.000026
noncoding26504T26504ATA22B.1.177.870.001456
noncoding26504T26504CTC22B.1.5260.000047
noncoding26504T26504CTC22B.1.5960.000174
noncoding26504T26504GTG22B.1.617.20.000008
noncoding26504T26504ATA22P.10.000032
noncoding26504T26504-T-22P.1.150.000465
noncoding26504T26504CTC11AY.100.00053
noncoding26504T26504-T-11AY.1000.000046
noncoding26504T26504-T-11AY.1080.001103
noncoding26504T26504ATA11AY.1180.000063
noncoding26504T26504-T-11AY.1180.000063
noncoding26504T26504-T-11AY.1190.000035
noncoding26504T26504ATA11AY.1190.000035
noncoding26504T26504-T-11AY.1200.000037
noncoding26504T26504CTC11AY.1200.000037
noncoding26504T26504CTC11AY.30.00001
noncoding26504T26504CTC11AY.300.000396
noncoding26504T26504CTC11AY.330.000067
noncoding26504T26504GTG11AY.390.000025
noncoding26504T26504CTC11AY.390.000025
noncoding26504T26504ATA11AY.410.000294
noncoding26504T26504GTG11AY.440.000006
noncoding26504T26504-T-11AY.440.000006
noncoding26504T26504ATA11AY.450.000122
noncoding26504T26504ATA11AY.460.000104
noncoding26504T26504-T-11AY.46.60.000072
noncoding26504T26504CTC11AY.50.000021
noncoding26504T26504ATA11AY.5.40.000277
noncoding26504T26504ATA11AY.560.001605
noncoding26504T26504CTC11AY.60.000041
noncoding26504T26504CTC11AY.610.000105
noncoding26504T26504-T-11AY.680.000274
noncoding26504T26504GTG11AY.690.000187
noncoding26504T26504ATA11AY.740.000116
noncoding26504T26504ATA11AY.750.000056
noncoding26504T26504ATA11AY.770.001127
noncoding26504T26504ATA11AY.780.001541
noncoding26504T26504CTC11AY.980.000079
noncoding26504T26504CTC11AZ.30.00152
noncoding26504T26504CTC11B0.000128
noncoding26504T26504GTG11B.10.000009
noncoding26504T26504ATA11B.1.10.000018
noncoding26504T26504CTC11B.1.10.000018
noncoding26504T26504CTC11B.1.1.1870.00885
noncoding26504T26504-T-11B.1.1.2880.001916
noncoding26504T26504ATA11B.1.1.500.000679
noncoding26504T26504-T-11B.1.1.5230.001563
noncoding26504T26504-T-11B.1.1.70.000001
noncoding26504T26504ATA11B.1.1770.000013
noncoding26504T26504ATA11B.1.177.190.001431
noncoding26504T26504CTC11B.1.177.210.000076
noncoding26504T26504ATA11B.1.2210.000071
noncoding26504T26504CTC11B.1.258.170.000104
noncoding26504T26504ATA11B.1.258.170.000104
noncoding26504T26504ATA11B.1.3510.00003
noncoding26504T26504ATA11B.1.36.290.000517
noncoding26504T26504ATA11B.1.3960.000706
noncoding26504T26504-T-11B.1.4270.00005
noncoding26504T26504ATA11B.1.4290.000024
noncoding26504T26504GTG11B.1.4290.000024
noncoding26504T26504-T-11B.1.617.10.000129
noncoding26504T26504ATA11B.1.617.10.000129
noncoding26504T26504GTG11B.1.6370.000073
noncoding26504T26504-T-11B.1.6380.052632
noncoding26504T26504CTC11L.20.011364
noncoding26504T26504CTC11P.10.000016
noncoding26504T26504CTC11P.1.100.000269
noncoding26504T26504-T-11P.1.130.000898
noncoding26504T26504ATA11P.1.170.000162
noncoding26504T26504-T-11P.1.70.000319
noncoding26504T26504CTC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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