CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 26230

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding26230G26230TnoncodingGT22582258126230-26230
noncoding26230G26230AnoncodingGA276276126230-26230
noncoding26230G26230CnoncodingGC7878126230-26230
noncoding26230G26230-noncodingG-1010126230-26230

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding26230G26230TGT22582258All0.000432
noncoding26230G26230TGT584584AY.290.009212
noncoding26230G26230TGT309309B.1.1.70.000277
noncoding26230G26230AGA276276All0.000053
noncoding26230G26230TGT245245AY.40.000381
noncoding26230G26230AGA135135AY.1030.000838
noncoding26230G26230TGT133133B.1.20.001171
noncoding26230G26230TGT9191AY.50.001879
noncoding26230G26230TGT8181B.1.617.20.000305
noncoding26230G26230CGC7878All0.000015
noncoding26230G26230TGT6868AY.160.025816
noncoding26230G26230TGT4545AD.20.009853
noncoding26230G26230AGA4545B.1.1.70.00004
noncoding26230G26230TGT4545B.1.1770.000593
noncoding26230G26230TGT4545B.1.1880.75
noncoding26230G26230TGT4343B.10.000394
noncoding26230G26230TGT3131B.1.1.370.005979
noncoding26230G26230CGC3131B.1.3690.008842
noncoding26230G26230TGT3030AY.430.000133
noncoding26230G26230TGT3030AY.440.000183
noncoding26230G26230TGT2929AY.1030.00018
noncoding26230G26230TGT2626B.1.1.4340.009062
noncoding26230G26230TGT2020AY.540.001907
noncoding26230G26230AGA1818AY.40.000028
noncoding26230G26230TGT1515AY.30.000149
noncoding26230G26230TGT1515B.1.5260.000353
noncoding26230G26230AGA1414AY.270.000906
noncoding26230G26230TGT1313AY.260.000368
noncoding26230G26230TGT1111AY.29.10.002426
noncoding26230G26230TGT1111AY.530.003163
noncoding26230G26230TGT1111B.1.6210.000974
noncoding26230G26230TGT1111P.10.000173
noncoding26230G26230-G-1010All0.000002
noncoding26230G26230TGT1010AY.1020.000265
noncoding26230G26230TGT99AY.200.00035
noncoding26230G26230TGT99AY.4.40.003682
noncoding26230G26230TGT99AY.420.000362
noncoding26230G26230TGT99B.1.1.250.005117
noncoding26230G26230CGC88AY.40.000012
noncoding26230G26230TGT88AY.9.10.00067
noncoding26230G26230TGT88B.1.10.000145
noncoding26230G26230TGT88B.1.36.80.008
noncoding26230G26230TGT88B.1.3690.002282
noncoding26230G26230TGT88B.1.4290.000188
noncoding26230G26230TGT88B.1.617.10.001032
noncoding26230G26230TGT77AY.4.20.000152
noncoding26230G26230TGT66AY.250.000036
noncoding26230G26230CGC66AY.440.000037
noncoding26230G26230TGT66AY.46.60.000433
noncoding26230G26230TGT66B0.000767
noncoding26230G26230TGT66B.1.258.170.000624
noncoding26230G26230TGT66B.1.438.20.115385
noncoding26230G26230AGA66B.1.5260.000141
noncoding26230G26230TGT55AY.1160.001434
noncoding26230G26230TGT55AY.230.000349
noncoding26230G26230CGC55AY.30.00005
noncoding26230G26230TGT55B.1.1.5190.000199
noncoding26230G26230CGC55B.1.1.70.000004
noncoding26230G26230TGT55B.1.1600.000156
noncoding26230G26230TGT55B.1.2580.000333
noncoding26230G26230TGT55B.1.258.140.004902
noncoding26230G26230AGA44AY.1190.000141
noncoding26230G26230TGT44AY.390.000099
noncoding26230G26230AGA44AY.450.000487
noncoding26230G26230TGT44AY.940.001771
noncoding26230G26230AGA44B.1.1.3180.001207
noncoding26230G26230CGC44B.1.177.200.00607
noncoding26230G26230TGT44B.1.177.70.000659
noncoding26230G26230CGC44B.1.20.000035
noncoding26230G26230TGT44B.1.2210.000284
noncoding26230G26230TGT44B.1.3910.00451
noncoding26230G26230CGC44B.1.617.20.000015
noncoding26230G26230AGA33AY.1000.000138
noncoding26230G26230TGT33AY.340.000291
noncoding26230G26230AGA33AY.430.000013
noncoding26230G26230AGA33AY.440.000018
noncoding26230G26230TGT33AY.480.001395
noncoding26230G26230TGT33AY.690.00056
noncoding26230G26230CGC33B.1.10.000054
noncoding26230G26230TGT33B.1.1.1690.054545
noncoding26230G26230TGT33B.1.1.280.000934
noncoding26230G26230TGT33B.1.1.630.001157
noncoding26230G26230-G-33B.1.1.70.000003
noncoding26230G26230AGA33B.1.360.000438
noncoding26230G26230AGA33B.1.36.180.001261
noncoding26230G26230TGT33B.1.4270.000151
noncoding26230G26230TGT33B.1.466.20.001174
noncoding26230G26230-G-220.111111
noncoding26230G26230TGT22AY.1130.000285
noncoding26230G26230TGT22AY.130.000322
noncoding26230G26230TGT22AY.270.000129
noncoding26230G26230AGA22AY.290.000032
noncoding26230G26230TGT22AY.330.000134
noncoding26230G26230AGA22AY.39.20.003082
noncoding26230G26230AGA22AY.4.40.000818
noncoding26230G26230TGT22AY.410.000588
noncoding26230G26230CGC22AY.420.00008
noncoding26230G26230AGA22AY.470.000062
noncoding26230G26230TGT22AY.470.000062
noncoding26230G26230AGA22AY.5.30.000675
noncoding26230G26230TGT22AY.790.002421
noncoding26230G26230TGT22AY.90.000135
noncoding26230G26230TGT22AY.98.10.000097
noncoding26230G26230AGA22B.10.000018
noncoding26230G26230AGA22B.1.10.000036
noncoding26230G26230TGT22B.1.1.1280.014184
noncoding26230G26230TGT22B.1.1.2220.000408
noncoding26230G26230TGT22B.1.1.3970.004505
noncoding26230G26230TGT22B.1.177.830.002963
noncoding26230G26230TGT22B.1.2340.000264
noncoding26230G26230TGT22B.1.3510.000059
noncoding26230G26230TGT22B.1.5640.000852
noncoding26230G26230TGT22B.1.5750.000607
noncoding26230G26230TGT22B.1.5960.000174
noncoding26230G26230AGA22B.1.617.20.000008
noncoding26230G26230TGT22B.400.000729
noncoding26230G26230CGC22C.320.046512
noncoding26230G26230TGT22C.36.30.001134
noncoding26230G26230TGT22Q.10.000253
noncoding26230G26230TGT11A0.000387
noncoding26230G26230AGA11A.2.20.001689
noncoding26230G26230TGT11A.2.50.000499
noncoding26230G26230AGA11AY.10.000396
noncoding26230G26230TGT11AY.1000.000046
noncoding26230G26230TGT11AY.1010.00049
noncoding26230G26230AGA11AY.1020.000027
noncoding26230G26230TGT11AY.1060.000335
noncoding26230G26230TGT11AY.1110.000183
noncoding26230G26230-G-11AY.1180.000063
noncoding26230G26230TGT11AY.1180.000063
noncoding26230G26230TGT11AY.1190.000035
noncoding26230G26230TGT11AY.1200.000037
noncoding26230G26230TGT11AY.1210.000135
noncoding26230G26230TGT11AY.3.10.000085
noncoding26230G26230TGT11AY.34.10.00051
noncoding26230G26230TGT11AY.360.000148
noncoding26230G26230AGA11AY.390.000025
noncoding26230G26230TGT11AY.39.10.00004
noncoding26230G26230AGA11AY.4.2.10.000149
noncoding26230G26230-G-11AY.430.000004
noncoding26230G26230TGT11AY.450.000122
noncoding26230G26230TGT11AY.520.000814
noncoding26230G26230TGT11AY.550.000917
noncoding26230G26230TGT11AY.580.000907
noncoding26230G26230TGT11AY.590.00053
noncoding26230G26230-G-11AY.680.000274
noncoding26230G26230TGT11AY.7.10.000113
noncoding26230G26230-G-11AY.750.000056
noncoding26230G26230CGC11AY.780.001541
noncoding26230G26230AGA11AY.80.000606
noncoding26230G26230TGT11AY.840.000437
noncoding26230G26230TGT11AY.850.000427
noncoding26230G26230TGT11AY.890.004902
noncoding26230G26230TGT11AY.910.00073
noncoding26230G26230AGA11AY.980.000079
noncoding26230G26230CGC11AY.980.000079
noncoding26230G26230TGT11AY.980.000079
noncoding26230G26230TGT11AY.99.20.000092
noncoding26230G26230AGA11B0.000128
noncoding26230G26230AGA11B.1.1.10.000327
noncoding26230G26230TGT11B.1.1.2140.000055
noncoding26230G26230TGT11B.1.1.3040.002809
noncoding26230G26230TGT11B.1.1.3060.000438
noncoding26230G26230TGT11B.1.1.330.000421
noncoding26230G26230TGT11B.1.1.3480.000796
noncoding26230G26230TGT11B.1.1.500.000679
noncoding26230G26230TGT11B.1.1.540.003021
noncoding26230G26230TGT11B.1.1110.001175
noncoding26230G26230TGT11B.1.1370.5
noncoding26230G26230TGT11B.1.1390.000733
noncoding26230G26230TGT11B.1.1460.004237
noncoding26230G26230-G-11B.1.160.320.004292
noncoding26230G26230CGC11B.1.160.70.002079
noncoding26230G26230AGA11B.1.1770.000013
noncoding26230G26230TGT11B.1.177.210.000076
noncoding26230G26230TGT11B.1.177.30.007634
noncoding26230G26230AGA11B.1.2210.000071
noncoding26230G26230TGT11B.1.2320.000537
noncoding26230G26230AGA11B.1.2430.00007
noncoding26230G26230CGC11B.1.2430.00007
noncoding26230G26230TGT11B.1.3200.001245
noncoding26230G26230TGT11B.1.3490.000715
noncoding26230G26230TGT11B.1.351.20.000303
noncoding26230G26230TGT11B.1.351.30.000876
noncoding26230G26230TGT11B.1.360.000146
noncoding26230G26230TGT11B.1.3670.000792
noncoding26230G26230TGT11B.1.3800.006623
noncoding26230G26230TGT11B.1.4590.004082
noncoding26230G26230TGT11B.1.4700.001404
noncoding26230G26230TGT11B.1.5030.002488
noncoding26230G26230TGT11B.1.5050.004386
noncoding26230G26230TGT11B.1.5380.008065
noncoding26230G26230TGT11B.1.5440.006024
noncoding26230G26230TGT11B.1.5510.00129
noncoding26230G26230AGA11B.1.5640.000426
noncoding26230G26230TGT11B.1.5760.000907
noncoding26230G26230TGT11B.1.5770.000687
noncoding26230G26230TGT11B.1.6090.000479
noncoding26230G26230TGT11B.1.6270.00202
noncoding26230G26230TGT11B.1.6280.000352
noncoding26230G26230TGT11B.1.6370.000073
noncoding26230G26230TGT11C.360.000911
noncoding26230G26230TGT11C.370.000116
noncoding26230G26230AGA11C.370.000116
noncoding26230G26230TGT11D.20.000075
noncoding26230G26230TGT11L.30.003546
noncoding26230G26230AGA11P.10.000016
noncoding26230G26230TGT11P.1.10.000318
noncoding26230G26230TGT11P.20.000187
noncoding26230G26230TGT11Q.30.000145
noncoding26230G26230TGT11Q.80.000165
noncoding26230G26230TGT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.