CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 26222

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding26222C26222TnoncodingCT38113811126222-26222
noncoding26222C26222-noncodingC-7777126222-26222
noncoding26222C26222AnoncodingCA1111126222-26222

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding26222C26222TCT38113811All0.000729
noncoding26222C26222TCT27922792B.1.6280.983791
noncoding26222C26222TCT471471B.1.6270.951515
noncoding26222C26222TCT293293B.1.6310.986532
noncoding26222C26222TCT9292B.10.000843
noncoding26222C26222-C-7777All0.000015
noncoding26222C26222-C-6161P.1.100.016438
noncoding26222C26222TCT1919B.1.1.70.000017
noncoding26222C26222TCT1616B.1.6090.00767
noncoding26222C26222TCT1414AY.40.000022
noncoding26222C26222TCT1212B.1.617.20.000045
noncoding26222C26222ACA1111All0.000002
noncoding26222C26222TCT1111B.1.10.0002
noncoding26222C26222TCT1111B.1.20.000097
noncoding26222C26222TCT1111P.1.120.005324
noncoding26222C26222-C-77B.1.1.70.000006
noncoding26222C26222TCT55B.1.3510.000149
noncoding26222C26222TCT44AY.98.10.000194
noncoding26222C26222TCT44B0.000511
noncoding26222C26222TCT44B.1.1770.000053
noncoding26222C26222-C-220.111111
noncoding26222C26222TCT22AY.1190.000071
noncoding26222C26222TCT22AY.250.000012
noncoding26222C26222TCT22AY.430.000009
noncoding26222C26222TCT22AY.440.000012
noncoding26222C26222TCT22AY.450.000243
noncoding26222C26222TCT22B.1.1.5190.000079
noncoding26222C26222TCT22B.1.4740.003802
noncoding26222C26222TCT22B.1.5960.000174
noncoding26222C26222TCT22B.1.6370.000146
noncoding26222C26222TCT110.055556
noncoding26222C26222TCT11A.2.5.20.001572
noncoding26222C26222TCT11AU.20.002421
noncoding26222C26222TCT11AY.1000.000046
noncoding26222C26222ACA11AY.1030.000006
noncoding26222C26222TCT11AY.1130.000142
noncoding26222C26222-C-11AY.1180.000063
noncoding26222C26222TCT11AY.1200.000037
noncoding26222C26222ACA11AY.230.00007
noncoding26222C26222TCT11AY.290.000016
noncoding26222C26222TCT11AY.380.000499
noncoding26222C26222ACA11AY.390.000025
noncoding26222C26222ACA11AY.420.00004
noncoding26222C26222TCT11AY.420.00004
noncoding26222C26222-C-11AY.430.000004
noncoding26222C26222-C-11AY.440.000006
noncoding26222C26222-C-11AY.470.000031
noncoding26222C26222TCT11AY.610.000105
noncoding26222C26222TCT11AY.670.000464
noncoding26222C26222-C-11AY.680.000274
noncoding26222C26222TCT11AY.720.001361
noncoding26222C26222TCT11AY.730.000665
noncoding26222C26222-C-11AY.750.000056
noncoding26222C26222ACA11AY.90.000068
noncoding26222C26222TCT11AY.9.20.000037
noncoding26222C26222TCT11AY.960.002075
noncoding26222C26222ACA11B0.000128
noncoding26222C26222-C-11B.10.000009
noncoding26222C26222TCT11B.1.1.1170.009709
noncoding26222C26222ACA11B.1.1.1530.001095
noncoding26222C26222TCT11B.1.1.2040.00304
noncoding26222C26222TCT11B.1.1.2940.001266
noncoding26222C26222TCT11B.1.1.3070.002532
noncoding26222C26222ACA11B.1.1.3180.000302
noncoding26222C26222TCT11B.1.1.5260.003546
noncoding26222C26222ACA11B.1.1.70.000001
noncoding26222C26222TCT11B.1.177.350.000691
noncoding26222C26222TCT11B.1.177.730.000566
noncoding26222C26222TCT11B.1.2210.000071
noncoding26222C26222TCT11B.1.2470.014925
noncoding26222C26222TCT11B.1.2580.000067
noncoding26222C26222TCT11B.1.3560.001727
noncoding26222C26222ACA11B.1.36.80.001
noncoding26222C26222TCT11B.1.3960.000706
noncoding26222C26222TCT11B.1.4270.00005
noncoding26222C26222TCT11B.1.5260.000024
noncoding26222C26222TCT11B.1.6210.000089
noncoding26222C26222TCT11C.370.000116
noncoding26222C26222ACA11D.20.000075
noncoding26222C26222TCT11D.20.000075
noncoding26222C26222TCT11P.10.000016
noncoding26222C26222TCT11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.