CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 25386 & Codon = A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding25386C25386AnoncodingCA2222125386-25386

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding25386C25386ACA2222All0.000004
noncoding25386C25386ACA44AY.290.000063
noncoding25386C25386ACA33C.370.000348
noncoding25386C25386ACA22AY.1020.000053
noncoding25386C25386ACA22AY.40.000003
noncoding25386C25386ACA22B.1.1770.000026
noncoding25386C25386ACA22B.1.258.60.039216
noncoding25386C25386ACA11AY.230.00007
noncoding25386C25386ACA11AY.260.000028
noncoding25386C25386ACA11AY.30.00001
noncoding25386C25386ACA11AY.430.000004
noncoding25386C25386ACA11B.1.1.70.000001
noncoding25386C25386ACA11B.1.617.20.000004
noncoding25386C25386ACA11C.160.00106

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.