CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 25386

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding25386C25386TnoncodingCT14601460125386-25386
noncoding25386C25386-noncodingC-100100125386-25386
noncoding25386C25386AnoncodingCA2222125386-25386
noncoding25386C25386GnoncodingCG22125386-25386
noncoding25386C25386RnoncodingCR11125386-25386

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding25386C25386TCT14601460All0.000279
noncoding25386C25386TCT945945AY.40.001471
noncoding25386C25386TCT107107B.1.1.70.000096
noncoding25386C25386-C-100100All0.000019
noncoding25386C25386TCT6666B.1.617.20.000249
noncoding25386C25386TCT4949B.1.258.60.960784
noncoding25386C25386-C-3434B.1.1.70.00003
noncoding25386C25386TCT2525AY.430.000111
noncoding25386C25386ACA2222All0.000004
noncoding25386C25386TCT2121AY.1030.00013
noncoding25386C25386TCT1818AY.250.000108
noncoding25386C25386-C-1818AY.4.50.001935
noncoding25386C25386TCT1414B.1.4290.000329
noncoding25386C25386TCT1313B.10.000119
noncoding25386C25386TCT1212AY.440.000073
noncoding25386C25386TCT1010B.1.1.390.005097
noncoding25386C25386-C-1010B.1.1770.000132
noncoding25386C25386TCT88AY.1130.001139
noncoding25386C25386TCT77B.1.1770.000092
noncoding25386C25386TCT77B.1.5260.000165
noncoding25386C25386TCT66AY.4.50.000645
noncoding25386C25386TCT55AY.1020.000133
noncoding25386C25386TCT55AY.390.000124
noncoding25386C25386-C-55AY.40.000008
noncoding25386C25386TCT55AY.410.00147
noncoding25386C25386TCT55AY.46.50.000992
noncoding25386C25386TCT55B.1.1.1760.002197
noncoding25386C25386TCT55B.1.1.3110.001791
noncoding25386C25386TCT55B.1.20.000044
noncoding25386C25386ACA44AY.290.000063
noncoding25386C25386TCT44AY.30.00004
noncoding25386C25386TCT44AY.360.000593
noncoding25386C25386TCT44AY.39.10.000158
noncoding25386C25386TCT44AY.4.20.000087
noncoding25386C25386TCT44B.1.10.000073
noncoding25386C25386TCT44P.10.000063
noncoding25386C25386TCT33AY.200.000117
noncoding25386C25386TCT33AY.260.000085
noncoding25386C25386TCT33AY.650.001599
noncoding25386C25386TCT33AY.98.10.000145
noncoding25386C25386TCT33B.1.1.5190.000119
noncoding25386C25386-C-33B.1.177.40.000633
noncoding25386C25386ACA33C.370.000348
noncoding25386C25386TCT220.111111
noncoding25386C25386GCG22All0
noncoding25386C25386ACA22AY.1020.000053
noncoding25386C25386TCT22AY.1100.000225
noncoding25386C25386TCT22AY.1180.000125
noncoding25386C25386TCT22AY.29.10.000441
noncoding25386C25386TCT22AY.300.000791
noncoding25386C25386ACA22AY.40.000003
noncoding25386C25386TCT22AY.420.00008
noncoding25386C25386TCT22AY.840.000875
noncoding25386C25386-C-22B.10.000018
noncoding25386C25386TCT22B.1.1600.000062
noncoding25386C25386ACA22B.1.1770.000026
noncoding25386C25386TCT22B.1.177.180.00232
noncoding25386C25386-C-22B.1.177.540.001213
noncoding25386C25386TCT22B.1.2340.000264
noncoding25386C25386ACA22B.1.258.60.039216
noncoding25386C25386TCT22B.1.3510.000059
noncoding25386C25386TCT22Q.80.00033
noncoding25386C25386TCT22R.10.00018
noncoding25386C25386-C-22U.30.007722
noncoding25386C25386TCT11A.10.000282
noncoding25386C25386TCT11AD.20.000219
noncoding25386C25386RCR11All0
noncoding25386C25386-C-11AY.1030.000006
noncoding25386C25386TCT11AY.1040.001984
noncoding25386C25386-C-11AY.1110.000183
noncoding25386C25386TCT11AY.1160.000287
noncoding25386C25386-C-11AY.1200.000037
noncoding25386C25386TCT11AY.120.10.000321
noncoding25386C25386TCT11AY.120.2.10.000498
noncoding25386C25386TCT11AY.140.000088
noncoding25386C25386TCT11AY.20.000356
noncoding25386C25386ACA11AY.230.00007
noncoding25386C25386-C-11AY.230.00007
noncoding25386C25386TCT11AY.230.00007
noncoding25386C25386ACA11AY.260.000028
noncoding25386C25386TCT11AY.290.000016
noncoding25386C25386ACA11AY.30.00001
noncoding25386C25386TCT11AY.3.10.000085
noncoding25386C25386TCT11AY.330.000067
noncoding25386C25386ACA11AY.430.000004
noncoding25386C25386-C-11AY.430.000004
noncoding25386C25386TCT11AY.450.000122
noncoding25386C25386TCT11AY.460.000104
noncoding25386C25386TCT11AY.46.40.000165
noncoding25386C25386TCT11AY.46.60.000072
noncoding25386C25386TCT11AY.470.000031
noncoding25386C25386TCT11AY.480.000465
noncoding25386C25386-C-11AY.50.000021
noncoding25386C25386TCT11AY.50.000021
noncoding25386C25386TCT11AY.590.00053
noncoding25386C25386-C-11AY.60.000041
noncoding25386C25386-C-11AY.600.000938
noncoding25386C25386RCR11AY.670.000464
noncoding25386C25386TCT11AY.820.001357
noncoding25386C25386TCT11AY.9.20.000037
noncoding25386C25386TCT11AY.930.000273
noncoding25386C25386TCT11AY.99.20.000092
noncoding25386C25386TCT11B0.000128
noncoding25386C25386-C-11B.1.10.000018
noncoding25386C25386GCG11B.1.10.000018
noncoding25386C25386TCT11B.1.1.100.001115
noncoding25386C25386TCT11B.1.1.2140.000055
noncoding25386C25386TCT11B.1.1.2220.000204
noncoding25386C25386-C-11B.1.1.3010.001179
noncoding25386C25386TCT11B.1.1.3030.002762
noncoding25386C25386TCT11B.1.1.3170.000412
noncoding25386C25386-C-11B.1.1.370.000193
noncoding25386C25386TCT11B.1.1.630.000386
noncoding25386C25386ACA11B.1.1.70.000001
noncoding25386C25386TCT11B.1.1.890.006061
noncoding25386C25386TCT11B.1.1390.000733
noncoding25386C25386TCT11B.1.160.160.000929
noncoding25386C25386-C-11B.1.160.230.004831
noncoding25386C25386-C-11B.1.177.160.000664
noncoding25386C25386-C-11B.1.177.180.00116
noncoding25386C25386-C-11B.1.177.190.001431
noncoding25386C25386TCT11B.1.177.450.000381
noncoding25386C25386TCT11B.1.177.570.000281
noncoding25386C25386TCT11B.1.177.600.000218
noncoding25386C25386TCT11B.1.177.690.001484
noncoding25386C25386-C-11B.1.177.760.002494
noncoding25386C25386TCT11B.1.214.30.007143
noncoding25386C25386TCT11B.1.2210.000071
noncoding25386C25386-C-11B.1.221.10.002907
noncoding25386C25386TCT11B.1.2400.000216
noncoding25386C25386TCT11B.1.2430.00007
noncoding25386C25386GCG11B.1.3510.00003
noncoding25386C25386TCT11B.1.351.20.000303
noncoding25386C25386-C-11B.1.36.170.000494
noncoding25386C25386-C-11B.1.36.180.00042
noncoding25386C25386-C-11B.1.4090.000781
noncoding25386C25386TCT11B.1.4270.00005
noncoding25386C25386TCT11B.1.438.10.000107
noncoding25386C25386TCT11B.1.5640.000426
noncoding25386C25386TCT11B.1.5770.000687
noncoding25386C25386-C-11B.1.5770.000687
noncoding25386C25386TCT11B.1.5960.000087
noncoding25386C25386-C-11B.1.617.20.000004
noncoding25386C25386ACA11B.1.617.20.000004
noncoding25386C25386TCT11B.1.6230.000536
noncoding25386C25386-C-11B.1.6380.052632
noncoding25386C25386ACA11C.160.00106
noncoding25386C25386TCT11N.50.001767
noncoding25386C25386-C-11P.1.150.000232
noncoding25386C25386TCT11P.1.70.000319
noncoding25386C25386TCT11P.20.000187

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.