CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 248 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding248G248-noncodingG-1711711248-248

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding248G248-G-171171All0.000033
noncoding248G248-G-4949B.1.1.70.000044
noncoding248G248-G-1313AY.40.00002
noncoding248G248-G-1010AY.230.000697
noncoding248G248-G-99AY.430.00004
noncoding248G248-G-77B.1.1770.000092
noncoding248G248-G-66AY.4.50.000645
noncoding248G248-G-44B.1.1.330.001684
noncoding248G248-G-44B.1.1.3480.003185
noncoding248G248-G-22AY.120.000632
noncoding248G248-G-22AY.1200.000074
noncoding248G248-G-22AY.190.002281
noncoding248G248-G-22AY.330.000134
noncoding248G248-G-22AY.34.10.00102
noncoding248G248-G-22AY.4.40.000818
noncoding248G248-G-22AY.450.000243
noncoding248G248-G-22AY.600.001876
noncoding248G248-G-22AY.90.000135
noncoding248G248-G-22B.1.177.580.002663
noncoding248G248-G-22B.1.20.000018
noncoding248G248-G-22B.1.360.000292
noncoding248G248-G-22B.1.617.20.000008
noncoding248G248-G-22N.60.014184
noncoding248G248-G-22P.20.000373
noncoding248G248-G-11A.10.000282
noncoding248G248-G-11AY.1160.000287
noncoding248G248-G-11AY.250.000006
noncoding248G248-G-11AY.260.000028
noncoding248G248-G-11AY.30.00001
noncoding248G248-G-11AY.380.000499
noncoding248G248-G-11AY.410.000294
noncoding248G248-G-11AY.460.000104
noncoding248G248-G-11AY.46.20.000635
noncoding248G248-G-11AY.590.00053
noncoding248G248-G-11AY.60.000041
noncoding248G248-G-11AY.610.000105
noncoding248G248-G-11AY.680.000274
noncoding248G248-G-11AY.75.10.00018
noncoding248G248-G-11AY.9.10.000084
noncoding248G248-G-11AY.940.000443
noncoding248G248-G-11AY.950.000761
noncoding248G248-G-11AY.98.10.000048
noncoding248G248-G-11B.10.000009
noncoding248G248-G-11B.1.10.000018
noncoding248G248-G-11B.1.1.1390.022727
noncoding248G248-G-11B.1.1.1700.001247
noncoding248G248-G-11B.1.1.2320.001815
noncoding248G248-G-11B.1.1.3110.000358
noncoding248G248-G-11B.1.1.3220.008772
noncoding248G248-G-11B.1.1.4090.002833
noncoding248G248-G-11B.1.1600.000031
noncoding248G248-G-11B.1.177.170.000821
noncoding248G248-G-11B.1.177.180.00116
noncoding248G248-G-11B.1.177.210.000076
noncoding248G248-G-11B.1.2580.000067
noncoding248G248-G-11B.1.36.170.000494
noncoding248G248-G-11B.1.36.180.00042
noncoding248G248-G-11B.1.4160.001269
noncoding248G248-G-11B.1.4290.000024
noncoding248G248-G-11C.350.000774
noncoding248G248-G-11N.40.004255
noncoding248G248-G-11P.10.000016
noncoding248G248-G-11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.