CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 248

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding248G248TnoncodingGT7617611248-248
noncoding248G248-noncodingG-1711711248-248
noncoding248G248AnoncodingGA44441248-248
noncoding248G248CnoncodingGC17171248-248

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding248G248TGT761761All0.000146
noncoding248G248TGT441441B.1.5740.948387
noncoding248G248-G-171171All0.000033
noncoding248G248TGT139139B.1.20.001224
noncoding248G248-G-4949B.1.1.70.000044
noncoding248G248AGA4444All0.000008
noncoding248G248AGA2626AY.430.000115
noncoding248G248TGT2323B.1.1.70.000021
noncoding248G248TGT1919B.10.000174
noncoding248G248CGC1717All0.000003
noncoding248G248TGT1717AY.40.000026
noncoding248G248TGT1616B.1.617.20.00006
noncoding248G248TGT1414P.10.000221
noncoding248G248-G-1313AY.40.00002
noncoding248G248CGC1111AY.40.000017
noncoding248G248-G-1010AY.230.000697
noncoding248G248-G-99AY.430.00004
noncoding248G248TGT99AY.430.00004
noncoding248G248TGT88AY.610.000838
noncoding248G248TGT77AY.1130.000997
noncoding248G248-G-77B.1.1770.000092
noncoding248G248TGT66AY.1000.000276
noncoding248G248-G-66AY.4.50.000645
noncoding248G248TGT66B.1.5960.000523
noncoding248G248TGT55AY.270.000324
noncoding248G248TGT55AY.440.00003
noncoding248G248TGT55B.1.10.000091
noncoding248G248TGT44AY.60.000165
noncoding248G248-G-44B.1.1.330.001684
noncoding248G248-G-44B.1.1.3480.003185
noncoding248G248AGA44B.1.1.70.000004
noncoding248G248TGT33AY.1030.000019
noncoding248G248TGT33AY.20.001068
noncoding248G248TGT33AY.390.000074
noncoding248G248AGA33AY.40.000005
noncoding248G248TGT33AY.860.00249
noncoding248G248AGA33B.1.1770.00004
noncoding248G248TGT33B.1.1770.00004
noncoding248G248-G-22AY.120.000632
noncoding248G248-G-22AY.1200.000074
noncoding248G248-G-22AY.190.002281
noncoding248G248TGT22AY.250.000012
noncoding248G248-G-22AY.330.000134
noncoding248G248-G-22AY.34.10.00102
noncoding248G248-G-22AY.4.40.000818
noncoding248G248-G-22AY.450.000243
noncoding248G248TGT22AY.590.001059
noncoding248G248-G-22AY.600.001876
noncoding248G248CGC22AY.70.000392
noncoding248G248-G-22AY.90.000135
noncoding248G248-G-22B.1.177.580.002663
noncoding248G248-G-22B.1.20.000018
noncoding248G248TGT22B.1.3510.000059
noncoding248G248-G-22B.1.360.000292
noncoding248G248-G-22B.1.617.20.000008
noncoding248G248-G-22N.60.014184
noncoding248G248TGT22P.1.150.000465
noncoding248G248-G-22P.20.000373
noncoding248G248-G-11A.10.000282
noncoding248G248CGC11AY.1020.000027
noncoding248G248TGT11AY.1110.000183
noncoding248G248CGC11AY.1140.000231
noncoding248G248-G-11AY.1160.000287
noncoding248G248TGT11AY.1200.000037
noncoding248G248-G-11AY.250.000006
noncoding248G248-G-11AY.260.000028
noncoding248G248TGT11AY.260.000028
noncoding248G248TGT11AY.30.00001
noncoding248G248-G-11AY.30.00001
noncoding248G248TGT11AY.330.000067
noncoding248G248-G-11AY.380.000499
noncoding248G248CGC11AY.4.20.000022
noncoding248G248-G-11AY.410.000294
noncoding248G248TGT11AY.420.00004
noncoding248G248AGA11AY.440.000006
noncoding248G248-G-11AY.460.000104
noncoding248G248-G-11AY.46.20.000635
noncoding248G248TGT11AY.46.60.000072
noncoding248G248AGA11AY.550.000917
noncoding248G248-G-11AY.590.00053
noncoding248G248-G-11AY.60.000041
noncoding248G248-G-11AY.610.000105
noncoding248G248-G-11AY.680.000274
noncoding248G248TGT11AY.750.000056
noncoding248G248-G-11AY.75.10.00018
noncoding248G248-G-11AY.9.10.000084
noncoding248G248AGA11AY.9.20.000037
noncoding248G248-G-11AY.940.000443
noncoding248G248-G-11AY.950.000761
noncoding248G248-G-11AY.98.10.000048
noncoding248G248TGT11AY.99.20.000092
noncoding248G248AGA11B0.000128
noncoding248G248-G-11B.10.000009
noncoding248G248-G-11B.1.10.000018
noncoding248G248-G-11B.1.1.1390.022727
noncoding248G248-G-11B.1.1.1700.001247
noncoding248G248-G-11B.1.1.2320.001815
noncoding248G248TGT11B.1.1.3060.000438
noncoding248G248-G-11B.1.1.3110.000358
noncoding248G248TGT11B.1.1.3170.000412
noncoding248G248-G-11B.1.1.3220.008772
noncoding248G248TGT11B.1.1.370.000193
noncoding248G248-G-11B.1.1.4090.002833
noncoding248G248CGC11B.1.1.70.000001
noncoding248G248-G-11B.1.1600.000031
noncoding248G248-G-11B.1.177.170.000821
noncoding248G248-G-11B.1.177.180.00116
noncoding248G248-G-11B.1.177.210.000076
noncoding248G248AGA11B.1.177.40.000211
noncoding248G248AGA11B.1.2340.000132
noncoding248G248TGT11B.1.2430.00007
noncoding248G248-G-11B.1.2580.000067
noncoding248G248-G-11B.1.36.170.000494
noncoding248G248-G-11B.1.36.180.00042
noncoding248G248-G-11B.1.4160.001269
noncoding248G248-G-11B.1.4290.000024
noncoding248G248AGA11B.1.5260.000024
noncoding248G248AGA11B.1.617.20.000004
noncoding248G248TGT11B.1.6210.000089
noncoding248G248-G-11C.350.000774
noncoding248G248-G-11N.40.004255
noncoding248G248-G-11P.10.000016
noncoding248G248-G-11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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