CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 245 | C245T | noncoding | C | T | 2849 | 2849 | 1 | 245-245 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 245 | C245T | C | T | 2849 | 2849 | All | 0.000545 |
noncoding | 245 | C245T | C | T | 436 | 436 | AY.4 | 0.000679 |
noncoding | 245 | C245T | C | T | 423 | 423 | B.1.2 | 0.003725 |
noncoding | 245 | C245T | C | T | 412 | 412 | B.1.1.7 | 0.000369 |
noncoding | 245 | C245T | C | T | 190 | 190 | AY.44 | 0.001156 |
noncoding | 245 | C245T | C | T | 189 | 189 | B.1.599 | 0.689781 |
noncoding | 245 | C245T | C | T | 143 | 143 | B.1.1 | 0.002594 |
noncoding | 245 | C245T | C | T | 114 | 114 | AY.43 | 0.000505 |
noncoding | 245 | C245T | C | T | 98 | 98 | B.1.438.1 | 0.010512 |
noncoding | 245 | C245T | C | T | 96 | 96 | B.1.617.2 | 0.000361 |
noncoding | 245 | C245T | C | T | 78 | 78 | B.1.234 | 0.010292 |
noncoding | 245 | C245T | C | T | 61 | 61 | AY.92 | 0.017524 |
noncoding | 245 | C245T | C | T | 60 | 60 | AY.25 | 0.000361 |
noncoding | 245 | C245T | C | T | 42 | 42 | AY.33 | 0.002805 |
noncoding | 245 | C245T | C | T | 33 | 33 | B.1.177 | 0.000435 |
noncoding | 245 | C245T | C | T | 32 | 32 | B.1.8 | 0.063116 |
noncoding | 245 | C245T | C | T | 31 | 31 | AY.3 | 0.000308 |
noncoding | 245 | C245T | C | T | 26 | 26 | AY.39.1 | 0.00103 |
noncoding | 245 | C245T | C | T | 24 | 24 | B.1 | 0.00022 |
noncoding | 245 | C245T | C | T | 20 | 20 | AY.103 | 0.000124 |
noncoding | 245 | C245T | C | T | 17 | 17 | B.1.596 | 0.001481 |
noncoding | 245 | C245T | C | T | 16 | 16 | AY.42 | 0.000644 |
noncoding | 245 | C245T | C | T | 15 | 15 | AY.26 | 0.000425 |
noncoding | 245 | C245T | C | T | 12 | 12 | AY.100 | 0.000552 |
noncoding | 245 | C245T | C | T | 12 | 12 | P.1 | 0.000189 |
noncoding | 245 | C245T | C | T | 10 | 10 | AY.46 | 0.001041 |
noncoding | 245 | C245T | C | T | 9 | 9 | B.1.637 | 0.000658 |
noncoding | 245 | C245T | C | T | 9 | 9 | C.37 | 0.001045 |
noncoding | 245 | C245T | C | T | 8 | 8 | AY.5 | 0.000165 |
noncoding | 245 | C245T | C | T | 8 | 8 | B.1.621 | 0.000708 |
noncoding | 245 | C245T | C | T | 7 | 7 | A.23.1 | 0.00493 |
noncoding | 245 | C245T | C | T | 7 | 7 | AY.39 | 0.000173 |
noncoding | 245 | C245T | C | T | 7 | 7 | B.1.1.318 | 0.002112 |
noncoding | 245 | C245T | C | T | 7 | 7 | B.1.1.44 | 0.016867 |
noncoding | 245 | C245T | C | T | 7 | 7 | B.1.258 | 0.000466 |
noncoding | 245 | C245T | C | T | 7 | 7 | P.1.14 | 0.000335 |
noncoding | 245 | C245T | C | T | 6 | 6 | D.2 | 0.00045 |
noncoding | 245 | C245T | C | T | 5 | 5 | AY.14 | 0.00044 |
noncoding | 245 | C245T | C | T | 5 | 5 | AY.23.1 | 0.002087 |
noncoding | 245 | C245T | C | T | 5 | 5 | AY.3.1 | 0.000426 |
noncoding | 245 | C245T | C | T | 5 | 5 | AY.46.6 | 0.000361 |
noncoding | 245 | C245T | C | T | 4 | 4 | AY.32 | 0.00213 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.1.433 | 0.005698 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.1.448 | 0.00813 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.1.50 | 0.002716 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.1.519 | 0.000159 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.160 | 0.000125 |
noncoding | 245 | C245T | C | T | 4 | 4 | B.1.628 | 0.001409 |
noncoding | 245 | C245T | C | T | 4 | 4 | Q.8 | 0.00066 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.102 | 0.00008 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.120 | 0.000112 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.4.2.1 | 0.000447 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.47 | 0.000093 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.98 | 0.000237 |
noncoding | 245 | C245T | C | T | 3 | 3 | AY.99.2 | 0.000276 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.1.277 | 0.002276 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.1.284 | 0.000322 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.1.306 | 0.001315 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.1.416 | 0.002715 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.111 | 0.003525 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.221 | 0.000213 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.240 | 0.000647 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 245 | C245T | C | T | 3 | 3 | B.1.427 | 0.000151 |
noncoding | 245 | C245T | C | T | 2 | 2 | AY.113 | 0.000285 |
noncoding | 245 | C245T | C | T | 2 | 2 | AY.2 | 0.000712 |
noncoding | 245 | C245T | C | T | 2 | 2 | AY.34 | 0.000194 |
noncoding | 245 | C245T | C | T | 2 | 2 | AY.61 | 0.00021 |
noncoding | 245 | C245T | C | T | 2 | 2 | AY.84 | 0.000875 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.1.348 | 0.001592 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.1.434 | 0.000697 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.1.95 | 0.039216 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.311 | 0.000549 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.420 | 0.020833 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.517 | 0.000854 |
noncoding | 245 | C245T | C | T | 2 | 2 | B.1.595 | 0.000522 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.109 | 0.00074 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.11 | 0.001339 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.116 | 0.000287 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.117 | 0.000085 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.118 | 0.000063 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.120.1 | 0.000321 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.121 | 0.000135 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.16 | 0.00038 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.23 | 0.00007 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.27 | 0.000065 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.30 | 0.000396 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.36 | 0.000148 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.4.2 | 0.000022 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.4.3 | 0.000842 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.52 | 0.000814 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.54 | 0.000095 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.74 | 0.000116 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.75 | 0.000056 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.87 | 0.000833 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.91 | 0.00073 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.95 | 0.000761 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.96 | 0.002075 |
noncoding | 245 | C245T | C | T | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.198 | 0.001468 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.237 | 0.005405 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.269 | 0.001353 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.1.486 | 0.001577 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.177.52 | 0.001757 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.223 | 0.002778 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.252 | 0.006623 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.3 | 0.002618 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.302 | 0.013333 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.36.36 | 0.000602 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.371 | 0.001122 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.416.1 | 0.001563 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.526 | 0.000024 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.532 | 0.006211 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.575 | 0.000303 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.1.78 | 0.008547 |
noncoding | 245 | C245T | C | T | 1 | 1 | B.40 | 0.000364 |
noncoding | 245 | C245T | C | T | 1 | 1 | C.35 | 0.000774 |
noncoding | 245 | C245T | C | T | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 245 | C245T | C | T | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|