CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 241 | C241- | noncoding | C | - | 1270 | 1270 | 1 | 241-241 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 241 | C241- | C | - | 1270 | 1270 | All | 0.000243 |
noncoding | 241 | C241- | C | - | 301 | 301 | B.1.2 | 0.00265 |
noncoding | 241 | C241- | C | - | 123 | 123 | B.1.1.7 | 0.00011 |
noncoding | 241 | C241- | C | - | 95 | 95 | B.1.617.2 | 0.000358 |
noncoding | 241 | C241- | C | - | 89 | 89 | AY.4 | 0.000139 |
noncoding | 241 | C241- | C | - | 85 | 85 | AY.54 | 0.008105 |
noncoding | 241 | C241- | C | - | 52 | 52 | AY.3 | 0.000517 |
noncoding | 241 | C241- | C | - | 34 | 34 | AY.103 | 0.000211 |
noncoding | 241 | C241- | C | - | 29 | 29 | B.1.160 | 0.000904 |
noncoding | 241 | C241- | C | - | 28 | 28 | AY.43 | 0.000124 |
noncoding | 241 | C241- | C | - | 26 | 26 | AY.44 | 0.000158 |
noncoding | 241 | C241- | C | - | 20 | 20 | AY.23 | 0.001395 |
noncoding | 241 | C241- | C | - | 18 | 18 | B.1 | 0.000165 |
noncoding | 241 | C241- | C | - | 16 | 16 | AY.25 | 0.000096 |
noncoding | 241 | C241- | C | - | 15 | 15 | B.1.621 | 0.001328 |
noncoding | 241 | C241- | C | - | 12 | 12 | B.1.1 | 0.000218 |
noncoding | 241 | C241- | C | - | 12 | 12 | B.1.1.277 | 0.009105 |
noncoding | 241 | C241- | C | - | 11 | 11 | AY.39 | 0.000272 |
noncoding | 241 | C241- | C | - | 9 | 9 | AY.119 | 0.000318 |
noncoding | 241 | C241- | C | - | 9 | 9 | B.1.177 | 0.000119 |
noncoding | 241 | C241- | C | - | 8 | 8 | AY.118 | 0.000501 |
noncoding | 241 | C241- | C | - | 7 | 7 | B.1.475 | 1 |
noncoding | 241 | C241- | C | - | 7 | 7 | B.1.599 | 0.025547 |
noncoding | 241 | C241- | C | - | 6 | 6 | AY.33 | 0.000401 |
noncoding | 241 | C241- | C | - | 6 | 6 | B.1.1.158 | 0.073171 |
noncoding | 241 | C241- | C | - | 6 | 6 | B.1.1.37 | 0.001157 |
noncoding | 241 | C241- | C | - | 5 | 5 | AY.100 | 0.00023 |
noncoding | 241 | C241- | C | - | 5 | 5 | AY.102 | 0.000133 |
noncoding | 241 | C241- | C | - | 5 | 5 | AY.4.2 | 0.000108 |
noncoding | 241 | C241- | C | - | 5 | 5 | AY.46 | 0.00052 |
noncoding | 241 | C241- | C | - | 5 | 5 | AY.47 | 0.000156 |
noncoding | 241 | C241- | C | - | 5 | 5 | B.1.429 | 0.000118 |
noncoding | 241 | C241- | C | - | 5 | 5 | B.1.526 | 0.000118 |
noncoding | 241 | C241- | C | - | 5 | 5 | P.1 | 0.000079 |
noncoding | 241 | C241- | C | - | 4 | 4 | AY.26 | 0.000113 |
noncoding | 241 | C241- | C | - | 4 | 4 | AY.29 | 0.000063 |
noncoding | 241 | C241- | C | - | 4 | 4 | AY.39.1 | 0.000158 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.1.153 | 0.004381 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.1.33 | 0.001684 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.1.348 | 0.003185 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.349 | 0.002859 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.402 | 0.039216 |
noncoding | 241 | C241- | C | - | 4 | 4 | B.1.525 | 0.000453 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.120 | 0.000112 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.20 | 0.000117 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.27 | 0.000194 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.34 | 0.000291 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.34.1 | 0.00153 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.42 | 0.000121 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.45 | 0.000365 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.46.1 | 0.00308 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.5 | 0.000062 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.60 | 0.002814 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.9 | 0.000203 |
noncoding | 241 | C241- | C | - | 3 | 3 | AY.92 | 0.000862 |
noncoding | 241 | C241- | C | - | 3 | 3 | B.1.178 | 0.071429 |
noncoding | 241 | C241- | C | - | 3 | 3 | B.1.243 | 0.000209 |
noncoding | 241 | C241- | C | - | 3 | 3 | B.1.258.17 | 0.000312 |
noncoding | 241 | C241- | C | - | 3 | 3 | B.1.609 | 0.001438 |
noncoding | 241 | C241- | C | - | 3 | 3 | P.2 | 0.00056 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.106 | 0.00067 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.113 | 0.000285 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.12 | 0.000632 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.23.1 | 0.000835 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.4.3 | 0.001684 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.4.4 | 0.000818 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.4.5 | 0.000215 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.75 | 0.000112 |
noncoding | 241 | C241- | C | - | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.1.1 | 0.000653 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.1.372 | 0.001377 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.1.409 | 0.005666 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.1.416 | 0.00181 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.177.21 | 0.000153 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.177.4 | 0.000422 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.177.46 | 0.001837 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.240 | 0.000431 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.351 | 0.000059 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.36 | 0.000292 |
noncoding | 241 | C241- | C | - | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 241 | C241- | C | - | 2 | 2 | C.37 | 0.000232 |
noncoding | 241 | C241- | C | - | 2 | 2 | N.6 | 0.014184 |
noncoding | 241 | C241- | C | - | 2 | 2 | Q.8 | 0.00033 |
noncoding | 241 | C241- | C | - | 1 | 1 | A.1 | 0.000282 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.1 | 0.000396 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.107 | 0.000466 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.111 | 0.000183 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.114 | 0.000231 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.116 | 0.000287 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.121 | 0.000135 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.14 | 0.000088 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.38 | 0.000499 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.41 | 0.000294 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.59 | 0.00053 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.6 | 0.000041 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.62 | 0.000436 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.65 | 0.000533 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.68 | 0.000274 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.7.1 | 0.000113 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.7.2 | 0.000559 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.80 | 0.001129 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.84 | 0.000437 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.86 | 0.00083 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.9.1 | 0.000084 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.9.2 | 0.000037 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.93 | 0.000273 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.94 | 0.000443 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.95 | 0.000761 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.98 | 0.000079 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.99 | 0.001049 |
noncoding | 241 | C241- | C | - | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.184 | 0.058824 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.232 | 0.001815 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.298 | 0.000862 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.311 | 0.000358 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.322 | 0.008772 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.335 | 0.012987 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.1.521 | 0.005348 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.177.10 | 0.000878 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.177.18 | 0.00116 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.177.44 | 0.000519 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.36.18 | 0.00042 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.362 | 0.001541 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.377 | 0.004566 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.398 | 0.002976 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 241 | C241- | C | - | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 241 | C241- | C | - | 1 | 1 | C.35 | 0.000774 |
noncoding | 241 | C241- | C | - | 1 | 1 | C.36 | 0.000911 |
noncoding | 241 | C241- | C | - | 1 | 1 | C.36.3.1 | 0.002717 |
noncoding | 241 | C241- | C | - | 1 | 1 | D.2 | 0.000075 |
noncoding | 241 | C241- | C | - | 1 | 1 | N.4 | 0.004255 |
noncoding | 241 | C241- | C | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 241 | C241- | C | - | 1 | 1 | P.1.15 | 0.000232 |
noncoding | 241 | C241- | C | - | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 241 | C241- | C | - | 1 | 1 | P.1.2 | 0.001156 |
noncoding | 241 | C241- | C | - | 1 | 1 | Q.1 | 0.000126 |
noncoding | 241 | C241- | C | - | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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