CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 224

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding224T224CnoncodingTC162616261224-224
noncoding224T224GnoncodingTG5215211224-224
noncoding224T224-noncodingT-1521521224-224
noncoding224T224AnoncodingTA73731224-224
noncoding224T224BnoncodingTB111224-224

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding224T224CTC16261626All0.000311
noncoding224T224GTG521521All0.0001
noncoding224T224GTG486486AY.40.000756
noncoding224T224CTC273273AY.390.006746
noncoding224T224CTC180180B.1.1.70.000161
noncoding224T224CTC167167AY.40.00026
noncoding224T224-T-152152All0.000029
noncoding224T224CTC112112B.1.3510.003329
noncoding224T224ATA7373All0.000014
noncoding224T224CTC7171P.10.001119
noncoding224T224CTC6666B.1.5260.001551
noncoding224T224CTC5959B.1.5631
noncoding224T224CTC5454AY.360.008004
noncoding224T224CTC4949B.1.1770.000645
noncoding224T224CTC4545AY.200.001749
noncoding224T224CTC4444B.10.000403
noncoding224T224ATA4343B.1.2580.002862
noncoding224T224CTC4141B.1.177.40.008653
noncoding224T224CTC3636B.1.2320.019344
noncoding224T224-T-3535B.1.1.70.000031
noncoding224T224CTC2929AA.10.210145
noncoding224T224CTC2929B.1.20.000255
noncoding224T224CTC2424AY.1030.000149
noncoding224T224CTC2323B.1.177.570.006462
noncoding224T224CTC2222B.1.617.20.000083
noncoding224T224CTC1919B.1.160.130.527778
noncoding224T224CTC1818AY.250.000108
noncoding224T224CTC1616AY.440.000097
noncoding224T224CTC1616B.1.4270.000808
noncoding224T224CTC1515AY.30.000149
noncoding224T224CTC1212AY.430.000053
noncoding224T224CTC1212B.1.1.2320.021779
noncoding224T224-T-1010AY.40.000016
noncoding224T224CTC1010B.1.1600.000312
noncoding224T224CTC1010B.1.177.170.00821
noncoding224T224GTG1010B.1.20.000088
noncoding224T224-T-99AY.230.000628
noncoding224T224GTG88AY.390.000198
noncoding224T224-T-88AY.430.000035
noncoding224T224CTC77AY.1050.004502
noncoding224T224CTC77AY.1180.000439
noncoding224T224CTC77AY.240.003017
noncoding224T224CTC77AY.290.00011
noncoding224T224CTC77B.1.10.000127
noncoding224T224CTC77B.1.2210.000497
noncoding224T224-T-66AY.39.10.000238
noncoding224T224CTC66AY.4.20.00013
noncoding224T224CTC55AY.1020.000133
noncoding224T224ATA55AY.430.000022
noncoding224T224CTC55AY.50.000103
noncoding224T224-T-55B.1.1770.000066
noncoding224T224-T-55B.1.20.000044
noncoding224T224GTG55B.1.617.20.000019
noncoding224T224CTC44AY.1130.00057
noncoding224T224CTC44AY.470.000124
noncoding224T224-T-44B.1.1.330.001684
noncoding224T224-T-44B.1.1.3480.003185
noncoding224T224CTC44B.1.177.520.00703
noncoding224T224ATA44B.1.20.000035
noncoding224T224CTC44B.1.4290.000094
noncoding224T224CTC44B.1.6210.000354
noncoding224T224CTC44P.1.160.001496
noncoding224T224CTC33AY.230.000209
noncoding224T224-T-33AY.34.10.00153
noncoding224T224GTG33B0.000383
noncoding224T224-T-33B.10.000027
noncoding224T224CTC33B.1.1.4340.001046
noncoding224T224ATA33B.1.1.70.000003
noncoding224T224-T-33B.1.1600.000094
noncoding224T224CTC33B.1.360.000438
noncoding224T224CTC22A0.000774
noncoding224T224CTC22AY.1000.000092
noncoding224T224CTC22AY.1160.000574
noncoding224T224-T-22AY.120.000632
noncoding224T224CTC22AY.120.10.000642
noncoding224T224CTC22AY.130.000322
noncoding224T224CTC22AY.260.000057
noncoding224T224-T-22AY.330.000134
noncoding224T224ATA22AY.40.000003
noncoding224T224-T-22AY.4.40.000818
noncoding224T224-T-22AY.450.000243
noncoding224T224CTC22AY.590.001059
noncoding224T224CTC22B0.000256
noncoding224T224ATA22B.1.10.000036
noncoding224T224CTC22B.1.1.1280.014184
noncoding224T224CTC22B.1.1.1920.004619
noncoding224T224CTC22B.1.1.5190.000079
noncoding224T224-T-22B.1.177.180.00232
noncoding224T224CTC22B.1.3690.00057
noncoding224T224-T-22B.1.4290.000047
noncoding224T224ATA22B.1.617.10.000258
noncoding224T224CTC22B.1.6280.000705
noncoding224T224CTC22C.370.000232
noncoding224T224CTC22C.400.055556
noncoding224T224-T-22N.60.014184
noncoding224T224-T-22P.1.140.000096
noncoding224T224-T-22P.20.000373
noncoding224T224CTC22P.30.00319
noncoding224T224BTB110.055556
noncoding224T224ATA11A.10.000282
noncoding224T224-T-11A.10.000282
noncoding224T224CTC11A.170.090909
noncoding224T224-T-11AE.80.000489
noncoding224T224BTB11All0
noncoding224T224CTC11AY.1010.00049
noncoding224T224ATA11AY.1020.000027
noncoding224T224CTC11AY.1080.001103
noncoding224T224CTC11AY.1090.00074
noncoding224T224-T-11AY.1160.000287
noncoding224T224-T-11AY.1200.000037
noncoding224T224CTC11AY.1210.000135
noncoding224T224CTC11AY.140.000088
noncoding224T224ATA11AY.16.10.00047
noncoding224T224CTC11AY.20.000356
noncoding224T224CTC11AY.23.10.000417
noncoding224T224-T-11AY.260.000028
noncoding224T224-T-11AY.30.00001
noncoding224T224CTC11AY.3.10.000085
noncoding224T224CTC11AY.340.000097
noncoding224T224GTG11AY.360.000148
noncoding224T224GTG11AY.380.000499
noncoding224T224-T-11AY.380.000499
noncoding224T224-T-11AY.4.20.000022
noncoding224T224-T-11AY.4.50.000107
noncoding224T224-T-11AY.410.000294
noncoding224T224GTG11AY.430.000004
noncoding224T224GTG11AY.440.000006
noncoding224T224-T-11AY.460.000104
noncoding224T224CTC11AY.46.20.000635
noncoding224T224-T-11AY.46.50.000198
noncoding224T224CTC11AY.540.000095
noncoding224T224ATA11AY.550.000917
noncoding224T224GTG11AY.590.00053
noncoding224T224-T-11AY.590.00053
noncoding224T224-T-11AY.60.000041
noncoding224T224-T-11AY.600.000938
noncoding224T224-T-11AY.680.000274
noncoding224T224CTC11AY.750.000056
noncoding224T224-T-11AY.75.10.00018
noncoding224T224CTC11AY.790.001211
noncoding224T224-T-11AY.90.000068
noncoding224T224-T-11AY.9.10.000084
noncoding224T224CTC11AY.920.000287
noncoding224T224-T-11AY.940.000443
noncoding224T224-T-11AY.950.000761
noncoding224T224CTC11AY.950.000761
noncoding224T224-T-11AY.98.10.000048
noncoding224T224CTC11AY.98.10.000048
noncoding224T224CTC11AY.99.20.000092
noncoding224T224ATA11B0.000128
noncoding224T224ATA11B.10.000009
noncoding224T224ATA11B.1.1.1390.022727
noncoding224T224CTC11B.1.1.1700.001247
noncoding224T224-T-11B.1.1.1700.001247
noncoding224T224CTC11B.1.1.2140.000055
noncoding224T224CTC11B.1.1.2220.000204
noncoding224T224CTC11B.1.1.2310.003096
noncoding224T224-T-11B.1.1.2320.001815
noncoding224T224CTC11B.1.1.2770.000759
noncoding224T224CTC11B.1.1.2850.006536
noncoding224T224-T-11B.1.1.3110.000358
noncoding224T224CTC11B.1.1.3160.000925
noncoding224T224-T-11B.1.1.3220.008772
noncoding224T224CTC11B.1.1.3230.014085
noncoding224T224-T-11B.1.1.4090.002833
noncoding224T224-T-11B.1.1.440.00241
noncoding224T224CTC11B.1.1.500.000679
noncoding224T224GTG11B.1.1.70.000001
noncoding224T224CTC11B.1.160.160.000929
noncoding224T224-T-11B.1.160.230.004831
noncoding224T224CTC11B.1.160.280.002924
noncoding224T224CTC11B.1.177.150.000631
noncoding224T224CTC11B.1.177.210.000076
noncoding224T224-T-11B.1.177.210.000076
noncoding224T224CTC11B.1.177.440.000519
noncoding224T224CTC11B.1.177.810.000189
noncoding224T224ATA11B.1.177.820.000477
noncoding224T224CTC11B.1.2340.000132
noncoding224T224CTC11B.1.2360.002053
noncoding224T224CTC11B.1.2430.00007
noncoding224T224-T-11B.1.2580.000067
noncoding224T224CTC11B.1.2580.000067
noncoding224T224CTC11B.1.3110.000275
noncoding224T224GTG11B.1.3320.003497
noncoding224T224GTG11B.1.3510.00003
noncoding224T224-T-11B.1.360.000146
noncoding224T224-T-11B.1.36.180.00042
noncoding224T224CTC11B.1.3620.001541
noncoding224T224-T-11B.1.4160.001269
noncoding224T224CTC11B.1.4500.011364
noncoding224T224CTC11B.1.4990.00105
noncoding224T224CTC11B.1.5240.001406
noncoding224T224-T-11B.1.5260.000024
noncoding224T224GTG11B.1.5260.000024
noncoding224T224CTC11B.1.5610.000397
noncoding224T224ATA11B.1.5640.000426
noncoding224T224CTC11B.1.6090.000479
noncoding224T224-T-11B.1.617.20.000004
noncoding224T224ATA11B.1.617.20.000004
noncoding224T224CTC11B.430.014286
noncoding224T224CTC11B.450.003831
noncoding224T224-T-11C.350.000774
noncoding224T224ATA11C.370.000116
noncoding224T224-T-11N.40.004255
noncoding224T224-T-11P.10.000016
noncoding224T224ATA11P.1.10.000318
noncoding224T224CTC11P.1.120.000484
noncoding224T224CTC11P.1.150.000232
noncoding224T224CTC11P.1.170.000162
noncoding224T224CTC11P.20.000187
noncoding224T224CTC11Z.10.00289

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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