CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 216

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding216G216AnoncodingGA6686681216-216
noncoding216G216TnoncodingGT2262261216-216
noncoding216G216-noncodingG-2102101216-216
noncoding216G216CnoncodingGC15151216-216

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding216G216AGA668668All0.000128
noncoding216G216TGT226226All0.000043
noncoding216G216-G-210210All0.00004
noncoding216G216AGA137137B.1.617.20.000516
noncoding216G216AGA9999B.1.1.70.000089
noncoding216G216AGA7575AY.1190.002648
noncoding216G216AGA4747AY.440.000286
noncoding216G216-G-4646B.1.1.70.000041
noncoding216G216AGA3434B.1.2580.002263
noncoding216G216AGA2727AY.1000.001242
noncoding216G216AGA2626Q.10.003284
noncoding216G216TGT2222B.1.1.4640.032401
noncoding216G216TGT2020AY.1030.000124
noncoding216G216AGA2020AY.40.000031
noncoding216G216-G-1818AY.40.000028
noncoding216G216AGA1717AY.250.000102
noncoding216G216TGT1717P.10.000268
noncoding216G216AGA1616B.1.1600.000499
noncoding216G216CGC1515All0.000003
noncoding216G216TGT1515AY.40.000023
noncoding216G216TGT1414R.10.00126
noncoding216G216TGT1313AY.440.000079
noncoding216G216TGT1313B.1.1.70.000012
noncoding216G216AGA1212AY.430.000053
noncoding216G216-G-1212AY.430.000053
noncoding216G216AGA1111B.1.20.000097
noncoding216G216TGT1010AY.9.20.000367
noncoding216G216AGA99AY.1030.000056
noncoding216G216-G-99AY.230.000628
noncoding216G216AGA99B.10.000082
noncoding216G216TGT88A.220.533333
noncoding216G216TGT88B.10.000073
noncoding216G216TGT77B.1.10.000127
noncoding216G216-G-77B.1.1770.000092
noncoding216G216AGA77B.1.1770.000092
noncoding216G216AGA77B.1.2430.000487
noncoding216G216AGA77B.1.4290.000165
noncoding216G216TGT77B.1.617.20.000026
noncoding216G216-G-66AY.30.00006
noncoding216G216TGT66B.1.1.570.068966
noncoding216G216-G-66B.1.20.000053
noncoding216G216AGA55AY.1020.000133
noncoding216G216CGC55B.1.617.20.000019
noncoding216G216-G-55B.1.617.20.000019
noncoding216G216AGA44AY.390.000099
noncoding216G216-G-44AY.9.10.000335
noncoding216G216-G-44B.1.1.330.001684
noncoding216G216-G-44B.1.1.3480.003185
noncoding216G216TGT44B.1.20.000035
noncoding216G216AGA44B.1.36.290.002069
noncoding216G216AGA44P.10.000063
noncoding216G216TGT33AY.160.001139
noncoding216G216-G-33AY.200.000117
noncoding216G216-G-33AY.240.001293
noncoding216G216TGT33AY.250.000018
noncoding216G216-G-33AY.250.000018
noncoding216G216AGA33AY.290.000047
noncoding216G216-G-33AY.330.0002
noncoding216G216-G-33AY.34.10.00153
noncoding216G216TGT33AY.390.000074
noncoding216G216AGA33AY.450.000365
noncoding216G216TGT33AY.750.000168
noncoding216G216AGA33AY.9.20.00011
noncoding216G216AGA33B.1.1.5190.000119
noncoding216G216TGT33B.1.1110.003525
noncoding216G216AGA33B.1.4270.000151
noncoding216G216TGT33B.1.4290.000071
noncoding216G216AGA33B.1.6370.000219
noncoding216G216TGT33P.1.120.001452
noncoding216G216TGT22AY.1020.000053
noncoding216G216AGA22AY.1070.000932
noncoding216G216AGA22AY.1160.000574
noncoding216G216TGT22AY.1180.000125
noncoding216G216TGT22AY.1190.000071
noncoding216G216-G-22AY.120.000632
noncoding216G216AGA22AY.200.000078
noncoding216G216AGA22AY.230.000139
noncoding216G216AGA22AY.270.000129
noncoding216G216AGA22AY.30.00002
noncoding216G216TGT22AY.30.00002
noncoding216G216TGT22AY.39.10.000079
noncoding216G216-G-22AY.4.20.000043
noncoding216G216AGA22AY.4.20.000043
noncoding216G216-G-22AY.4.40.000818
noncoding216G216-G-22AY.450.000243
noncoding216G216AGA22B.1.10.000036
noncoding216G216-G-22B.1.10.000036
noncoding216G216-G-22B.1.1600.000062
noncoding216G216-G-22B.1.177.180.00232
noncoding216G216TGT22B.1.2430.000139
noncoding216G216AGA22B.1.3360.004878
noncoding216G216AGA22B.1.3960.001411
noncoding216G216TGT22B.1.4040.002604
noncoding216G216TGT22B.1.4270.000101
noncoding216G216-G-22B.1.4290.000047
noncoding216G216AGA22B.1.5260.000047
noncoding216G216-G-22B.1.5960.000174
noncoding216G216TGT22B.1.6090.000959
noncoding216G216AGA22B.1.617.10.000258
noncoding216G216AGA22B.1.6210.000177
noncoding216G216AGA22B.1.6280.000705
noncoding216G216AGA22C.370.000232
noncoding216G216-G-22N.60.014184
noncoding216G216-G-22P.10.000032
noncoding216G216-G-22P.1.140.000096
noncoding216G216-G-22P.20.000373
noncoding216G216-G-11A.10.000282
noncoding216G216-G-11AE.80.000489
noncoding216G216CGC11AY.1000.000046
noncoding216G216-G-11AY.1020.000027
noncoding216G216-G-11AY.1030.000006
noncoding216G216AGA11AY.1050.000643
noncoding216G216-G-11AY.1160.000287
noncoding216G216AGA11AY.1170.000085
noncoding216G216AGA11AY.1180.000063
noncoding216G216-G-11AY.1200.000037
noncoding216G216AGA11AY.140.000088
noncoding216G216TGT11AY.260.000028
noncoding216G216AGA11AY.260.000028
noncoding216G216TGT11AY.290.000016
noncoding216G216TGT11AY.3.10.000085
noncoding216G216AGA11AY.340.000097
noncoding216G216AGA11AY.350.000233
noncoding216G216-G-11AY.380.000499
noncoding216G216TGT11AY.380.000499
noncoding216G216-G-11AY.390.000025
noncoding216G216-G-11AY.39.10.00004
noncoding216G216CGC11AY.40.000002
noncoding216G216TGT11AY.4.20.000022
noncoding216G216AGA11AY.4.50.000107
noncoding216G216-G-11AY.4.50.000107
noncoding216G216-G-11AY.410.000294
noncoding216G216CGC11AY.430.000004
noncoding216G216-G-11AY.440.000006
noncoding216G216TGT11AY.450.000122
noncoding216G216-G-11AY.460.000104
noncoding216G216AGA11AY.46.40.000165
noncoding216G216-G-11AY.46.40.000165
noncoding216G216AGA11AY.46.50.000198
noncoding216G216AGA11AY.470.000031
noncoding216G216AGA11AY.50.000021
noncoding216G216AGA11AY.5.20.002463
noncoding216G216AGA11AY.5.40.000277
noncoding216G216TGT11AY.5.40.000277
noncoding216G216AGA11AY.540.000095
noncoding216G216-G-11AY.540.000095
noncoding216G216-G-11AY.590.00053
noncoding216G216-G-11AY.60.000041
noncoding216G216AGA11AY.60.000041
noncoding216G216-G-11AY.600.000938
noncoding216G216TGT11AY.610.000105
noncoding216G216TGT11AY.670.000464
noncoding216G216-G-11AY.680.000274
noncoding216G216AGA11AY.690.000187
noncoding216G216-G-11AY.75.10.00018
noncoding216G216AGA11AY.840.000437
noncoding216G216-G-11AY.90.000068
noncoding216G216-G-11AY.940.000443
noncoding216G216-G-11AY.950.000761
noncoding216G216AGA11AY.980.000079
noncoding216G216AGA11AY.98.10.000048
noncoding216G216-G-11AY.98.10.000048
noncoding216G216AGA11AZ.30.00152
noncoding216G216AGA11B0.000128
noncoding216G216TGT11B0.000128
noncoding216G216-G-11B.10.000009
noncoding216G216CGC11B.10.000009
noncoding216G216AGA11B.1.1.10.000327
noncoding216G216-G-11B.1.1.1390.022727
noncoding216G216-G-11B.1.1.1700.001247
noncoding216G216-G-11B.1.1.2320.001815
noncoding216G216AGA11B.1.1.2400.004695
noncoding216G216AGA11B.1.1.250.000569
noncoding216G216AGA11B.1.1.2550.00303
noncoding216G216-G-11B.1.1.2690.001353
noncoding216G216AGA11B.1.1.3050.003861
noncoding216G216AGA11B.1.1.3060.000438
noncoding216G216-G-11B.1.1.3110.000358
noncoding216G216-G-11B.1.1.3220.008772
noncoding216G216AGA11B.1.1.330.000421
noncoding216G216TGT11B.1.1.3620.005618
noncoding216G216CGC11B.1.1.4030.025641
noncoding216G216-G-11B.1.1.4090.002833
noncoding216G216AGA11B.1.1.4160.000905
noncoding216G216-G-11B.1.1.440.00241
noncoding216G216AGA11B.1.1.5260.003546
noncoding216G216CGC11B.1.1.70.000001
noncoding216G216AGA11B.1.1490.003425
noncoding216G216CGC11B.1.1600.000031
noncoding216G216-G-11B.1.160.230.004831
noncoding216G216TGT11B.1.1770.000013
noncoding216G216AGA11B.1.177.150.000631
noncoding216G216-G-11B.1.177.210.000076
noncoding216G216CGC11B.1.177.430.001477
noncoding216G216AGA11B.1.177.600.000218
noncoding216G216-G-11B.1.177.620.001192
noncoding216G216TGT11B.1.1920.009259
noncoding216G216TGT11B.1.2340.000132
noncoding216G216-G-11B.1.2430.00007
noncoding216G216CGC11B.1.2580.000067
noncoding216G216-G-11B.1.2580.000067
noncoding216G216AGA11B.1.258.160.001637
noncoding216G216TGT11B.1.2650.001271
noncoding216G216CGC11B.1.3240.001605
noncoding216G216TGT11B.1.3510.00003
noncoding216G216AGA11B.1.351.50.0006
noncoding216G216-G-11B.1.360.000146
noncoding216G216AGA11B.1.36.310.001751
noncoding216G216TGT11B.1.36.80.001
noncoding216G216TGT11B.1.3690.000285
noncoding216G216-G-11B.1.4160.001269
noncoding216G216AGA11B.1.4480.002625
noncoding216G216AGA11B.1.4700.001404
noncoding216G216-G-11B.1.5260.000024
noncoding216G216AGA11B.1.564.10.001577
noncoding216G216TGT11B.1.5680.001111
noncoding216G216-G-11B.1.5730.006098
noncoding216G216-G-11B.100.008264
noncoding216G216TGT11B.310.003731
noncoding216G216AGA11C.290.0625
noncoding216G216-G-11C.350.000774
noncoding216G216TGT11C.36.30.000567
noncoding216G216-G-11D.20.000075
noncoding216G216TGT11D.20.000075
noncoding216G216-G-11N.40.004255
noncoding216G216AGA11P.1.170.000162
noncoding216G216TGT11P.20.000187
noncoding216G216AGA11Q.20.000613
noncoding216G216-G-11Q.70.001111
noncoding216G216-G-11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.