CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 208 & Codon = -

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	208	G208-		noncoding	G	-	522	522	1	208-208

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	208	G208-	G	-	522	522	All	0.0001
noncoding	208	G208-	G	-	61	61	AY.103	0.000379
noncoding	208	G208-	G	-	50	50	B.1.1.7	0.000045
noncoding	208	G208-	G	-	47	47	AY.44	0.000286
noncoding	208	G208-	G	-	42	42	AY.3.1	0.003581
noncoding	208	G208-	G	-	35	35	AY.4	0.000054
noncoding	208	G208-	G	-	29	29	B.1	0.000266
noncoding	208	G208-	G	-	22	22	AY.25	0.000132
noncoding	208	G208-	G	-	19	19	B.1.617.2	0.000072
noncoding	208	G208-	G	-	18	18	B.1.401	0.147541
noncoding	208	G208-	G	-	15	15	AY.117	0.001268
noncoding	208	G208-	G	-	14	14	AY.43	0.000062
noncoding	208	G208-	G	-	9	9	AY.23	0.000628
noncoding	208	G208-	G	-	9	9	B.1.2	0.000079
noncoding	208	G208-	G	-	8	8	AY.3	0.00008
noncoding	208	G208-	G	-	7	7	B.1.177	0.000092
noncoding	208	G208-	G	-	6	6	B.1.351	0.000178
noncoding	208	G208-	G	-	5	5	AY.102	0.000133
noncoding	208	G208-	G	-	5	5	AY.20	0.000194
noncoding	208	G208-	G	-	4	4	AY.13	0.000644
noncoding	208	G208-	G	-	4	4	AY.9.1	0.000335
noncoding	208	G208-	G	-	4	4	B.1.1.33	0.001684
noncoding	208	G208-	G	-	4	4	B.1.1.348	0.003185
noncoding	208	G208-	G	-	4	4	B.1.405	0.049383
noncoding	208	G208-	G	-	4	4	B.1.429	0.000094
noncoding	208	G208-	G	-	3	3	AY.120	0.000112
noncoding	208	G208-	G	-	3	3	AY.24	0.001293
noncoding	208	G208-	G	-	3	3	AY.33	0.0002
noncoding	208	G208-	G	-	3	3	AY.34.1	0.00153
noncoding	208	G208-	G	-	3	3	B.1.1	0.000054
noncoding	208	G208-	G	-	3	3	P.1	0.000047
noncoding	208	G208-	G	-	3	3	P.1.14	0.000143
noncoding	208	G208-	G	-	2	2	AY.12	0.000632
noncoding	208	G208-	G	-	2	2	AY.37	0.000632
noncoding	208	G208-	G	-	2	2	AY.4.2	0.000043
noncoding	208	G208-	G	-	2	2	AY.4.4	0.000818
noncoding	208	G208-	G	-	2	2	AY.4.5	0.000215
noncoding	208	G208-	G	-	2	2	AY.45	0.000243
noncoding	208	G208-	G	-	2	2	AY.46.6	0.000144
noncoding	208	G208-	G	-	2	2	AY.60	0.001876
noncoding	208	G208-	G	-	2	2	B.1.160	0.000062
noncoding	208	G208-	G	-	2	2	B.1.177.18	0.00232
noncoding	208	G208-	G	-	2	2	B.1.416	0.002538
noncoding	208	G208-	G	-	2	2	B.1.596	0.000174
noncoding	208	G208-	G	-	2	2	N.6	0.014184
noncoding	208	G208-	G	-	2	2	P.2	0.000373
noncoding	208	G208-	G	-	1	1	A.1	0.000282
noncoding	208	G208-	G	-	1	1	AE.8	0.000489
noncoding	208	G208-	G	-	1	1	AY.100	0.000046
noncoding	208	G208-	G	-	1	1	AY.116	0.000287
noncoding	208	G208-	G	-	1	1	AY.119	0.000035
noncoding	208	G208-	G	-	1	1	AY.120.1	0.000321
noncoding	208	G208-	G	-	1	1	AY.38	0.000499
noncoding	208	G208-	G	-	1	1	AY.39	0.000025
noncoding	208	G208-	G	-	1	1	AY.39.1	0.00004
noncoding	208	G208-	G	-	1	1	AY.4.2.1	0.000149
noncoding	208	G208-	G	-	1	1	AY.41	0.000294
noncoding	208	G208-	G	-	1	1	AY.46	0.000104
noncoding	208	G208-	G	-	1	1	AY.46.4	0.000165
noncoding	208	G208-	G	-	1	1	AY.47	0.000031
noncoding	208	G208-	G	-	1	1	AY.5	0.000021
noncoding	208	G208-	G	-	1	1	AY.59	0.00053
noncoding	208	G208-	G	-	1	1	AY.6	0.000041
noncoding	208	G208-	G	-	1	1	AY.68	0.000274
noncoding	208	G208-	G	-	1	1	AY.75.1	0.00018
noncoding	208	G208-	G	-	1	1	AY.9	0.000068
noncoding	208	G208-	G	-	1	1	AY.94	0.000443
noncoding	208	G208-	G	-	1	1	AY.95	0.000761
noncoding	208	G208-	G	-	1	1	AY.98.1	0.000048
noncoding	208	G208-	G	-	1	1	B.1.1.139	0.022727
noncoding	208	G208-	G	-	1	1	B.1.1.170	0.001247
noncoding	208	G208-	G	-	1	1	B.1.1.232	0.001815
noncoding	208	G208-	G	-	1	1	B.1.1.269	0.001353
noncoding	208	G208-	G	-	1	1	B.1.1.311	0.000358
noncoding	208	G208-	G	-	1	1	B.1.1.322	0.008772
noncoding	208	G208-	G	-	1	1	B.1.1.409	0.002833
noncoding	208	G208-	G	-	1	1	B.1.1.44	0.00241
noncoding	208	G208-	G	-	1	1	B.1.1.89	0.006061
noncoding	208	G208-	G	-	1	1	B.1.160.23	0.004831
noncoding	208	G208-	G	-	1	1	B.1.177.21	0.000076
noncoding	208	G208-	G	-	1	1	B.1.177.62	0.001192
noncoding	208	G208-	G	-	1	1	B.1.225	0.015385
noncoding	208	G208-	G	-	1	1	B.1.243	0.00007
noncoding	208	G208-	G	-	1	1	B.1.258	0.000067
noncoding	208	G208-	G	-	1	1	B.1.315	0.006061
noncoding	208	G208-	G	-	1	1	B.1.36	0.000146
noncoding	208	G208-	G	-	1	1	B.1.526	0.000024
noncoding	208	G208-	G	-	1	1	B.1.573	0.006098
noncoding	208	G208-	G	-	1	1	B.10	0.008264
noncoding	208	G208-	G	-	1	1	C.35	0.000774
noncoding	208	G208-	G	-	1	1	D.2	0.000075
noncoding	208	G208-	G	-	1	1	N.4	0.004255
noncoding	208	G208-	G	-	1	1	Q.7	0.001111
noncoding	208	G208-	G	-	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.