CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 208

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
noncoding	208	G208A		noncoding	G	A	4185	4185	1	208-208
noncoding	208	G208T		noncoding	G	T	3429	3429	1	208-208
noncoding	208	G208-		noncoding	G	-	522	522	1	208-208
noncoding	208	G208C		noncoding	G	C	20	20	1	208-208
noncoding	208	G208V		noncoding	G	V	3	3	1	208-208

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
noncoding	208	G208A	G	A	4185	4185	All	0.0008
noncoding	208	G208T	G	T	3429	3429	All	0.000656
noncoding	208	G208T	G	T	2514	2514	AY.103	0.01561
noncoding	208	G208A	G	A	2165	2165	AY.44	0.013178
noncoding	208	G208A	G	A	876	876	AY.117	0.074037
noncoding	208	G208-	G	-	522	522	All	0.0001
noncoding	208	G208A	G	A	452	452	AY.4	0.000704
noncoding	208	G208T	G	T	258	258	B.1	0.002363
noncoding	208	G208A	G	A	224	224	B.1.617.2	0.000843
noncoding	208	G208T	G	T	121	121	B.1.1.7	0.000108
noncoding	208	G208T	G	T	89	89	B.1.401	0.729508
noncoding	208	G208T	G	T	73	73	AY.43	0.000323
noncoding	208	G208T	G	T	68	68	B.1.405	0.839506
noncoding	208	G208T	G	T	62	62	B.1.617.2	0.000233
noncoding	208	G208-	G	-	61	61	AY.103	0.000379
noncoding	208	G208A	G	A	50	50	AY.25	0.000301
noncoding	208	G208-	G	-	50	50	B.1.1.7	0.000045
noncoding	208	G208T	G	T	49	49	AY.4	0.000076
noncoding	208	G208-	G	-	47	47	AY.44	0.000286
noncoding	208	G208A	G	A	44	44	AY.103	0.000273
noncoding	208	G208A	G	A	44	44	AY.43	0.000195
noncoding	208	G208-	G	-	42	42	AY.3.1	0.003581
noncoding	208	G208A	G	A	38	38	AY.100	0.001748
noncoding	208	G208-	G	-	35	35	AY.4	0.000054
noncoding	208	G208-	G	-	29	29	B.1	0.000266
noncoding	208	G208A	G	A	26	26	AY.3	0.000259
noncoding	208	G208A	G	A	25	25	AY.16	0.009491
noncoding	208	G208-	G	-	22	22	AY.25	0.000132
noncoding	208	G208C	G	C	20	20	All	0.000004
noncoding	208	G208A	G	A	19	19	AY.39	0.00047
noncoding	208	G208-	G	-	19	19	B.1.617.2	0.000072
noncoding	208	G208-	G	-	18	18	B.1.401	0.147541
noncoding	208	G208A	G	A	17	17	AY.42	0.000684
noncoding	208	G208A	G	A	16	16	AY.119	0.000565
noncoding	208	G208-	G	-	15	15	AY.117	0.001268
noncoding	208	G208A	G	A	14	14	AY.26	0.000396
noncoding	208	G208-	G	-	14	14	AY.43	0.000062
noncoding	208	G208T	G	T	14	14	B.1.243	0.000974
noncoding	208	G208T	G	T	12	12	AY.25	0.000072
noncoding	208	G208A	G	A	12	12	AY.4.2	0.00026
noncoding	208	G208A	G	A	11	11	AY.9.2	0.000404
noncoding	208	G208T	G	T	11	11	P.1	0.000173
noncoding	208	G208A	G	A	10	10	AY.5	0.000206
noncoding	208	G208-	G	-	9	9	AY.23	0.000628
noncoding	208	G208T	G	T	9	9	AY.44	0.000055
noncoding	208	G208A	G	A	9	9	AY.77	0.010147
noncoding	208	G208-	G	-	9	9	B.1.2	0.000079
noncoding	208	G208A	G	A	8	8	AY.102	0.000212
noncoding	208	G208T	G	T	8	8	AY.20	0.000311
noncoding	208	G208-	G	-	8	8	AY.3	0.00008
noncoding	208	G208A	G	A	8	8	AY.3.1	0.000682
noncoding	208	G208T	G	T	8	8	AY.39	0.000198
noncoding	208	G208T	G	T	7	7	AY.3	0.00007
noncoding	208	G208T	G	T	7	7	AY.3.1	0.000597
noncoding	208	G208A	G	A	7	7	AY.46	0.000729
noncoding	208	G208T	G	T	7	7	B.1.1.519	0.000278
noncoding	208	G208-	G	-	7	7	B.1.177	0.000092
noncoding	208	G208A	G	A	7	7	B.1.429	0.000165
noncoding	208	G208C	G	C	6	6	AY.102	0.000159
noncoding	208	G208A	G	A	6	6	AY.46.5	0.00119
noncoding	208	G208A	G	A	6	6	AY.96	0.012448
noncoding	208	G208-	G	-	6	6	B.1.351	0.000178
noncoding	208	G208T	G	T	6	6	B.1.351	0.000178
noncoding	208	G208-	G	-	5	5	AY.102	0.000133
noncoding	208	G208-	G	-	5	5	AY.20	0.000194
noncoding	208	G208A	G	A	5	5	AY.33	0.000334
noncoding	208	G208A	G	A	5	5	AY.4.2.1	0.000745
noncoding	208	G208A	G	A	5	5	AY.46.6	0.000361
noncoding	208	G208T	G	T	5	5	AY.5	0.000103
noncoding	208	G208A	G	A	5	5	AY.75	0.00028
noncoding	208	G208T	G	T	5	5	B.1.177.80	0.00956
noncoding	208	G208A	G	A	4	4	AY.113	0.00057
noncoding	208	G208-	G	-	4	4	AY.13	0.000644
noncoding	208	G208T	G	T	4	4	AY.23	0.000279
noncoding	208	G208C	G	C	4	4	AY.44	0.000024
noncoding	208	G208T	G	T	4	4	AY.45	0.000487
noncoding	208	G208T	G	T	4	4	AY.48	0.00186
noncoding	208	G208A	G	A	4	4	AY.8	0.002424
noncoding	208	G208-	G	-	4	4	AY.9.1	0.000335
noncoding	208	G208T	G	T	4	4	B.1.1.207	0.004728
noncoding	208	G208-	G	-	4	4	B.1.1.33	0.001684
noncoding	208	G208-	G	-	4	4	B.1.1.348	0.003185
noncoding	208	G208-	G	-	4	4	B.1.405	0.049383
noncoding	208	G208-	G	-	4	4	B.1.429	0.000094
noncoding	208	G208T	G	T	4	4	P.1.14	0.000191
noncoding	208	G208V	G	V	3	3	All	0.000001
noncoding	208	G208A	G	A	3	3	AY.120	0.000112
noncoding	208	G208-	G	-	3	3	AY.120	0.000112
noncoding	208	G208A	G	A	3	3	AY.20	0.000117
noncoding	208	G208-	G	-	3	3	AY.24	0.001293
noncoding	208	G208A	G	A	3	3	AY.29	0.000047
noncoding	208	G208T	G	T	3	3	AY.29	0.000047
noncoding	208	G208-	G	-	3	3	AY.33	0.0002
noncoding	208	G208-	G	-	3	3	AY.34.1	0.00153
noncoding	208	G208A	G	A	3	3	AY.98.1	0.000145
noncoding	208	G208-	G	-	3	3	B.1.1	0.000054
noncoding	208	G208T	G	T	3	3	B.1.1	0.000054
noncoding	208	G208-	G	-	3	3	P.1	0.000047
noncoding	208	G208-	G	-	3	3	P.1.14	0.000143
noncoding	208	G208T	G	T	2	2	AY.100	0.000092
noncoding	208	G208T	G	T	2	2	AY.102	0.000053
noncoding	208	G208A	G	A	2	2	AY.109	0.001479
noncoding	208	G208A	G	A	2	2	AY.111	0.000366
noncoding	208	G208-	G	-	2	2	AY.12	0.000632
noncoding	208	G208A	G	A	2	2	AY.120.2.1	0.000997
noncoding	208	G208A	G	A	2	2	AY.121	0.000271
noncoding	208	G208A	G	A	2	2	AY.30	0.000791
noncoding	208	G208-	G	-	2	2	AY.37	0.000632
noncoding	208	G208T	G	T	2	2	AY.37	0.000632
noncoding	208	G208C	G	C	2	2	AY.39	0.000049
noncoding	208	G208T	G	T	2	2	AY.39.1	0.000079
noncoding	208	G208C	G	C	2	2	AY.4	0.000003
noncoding	208	G208T	G	T	2	2	AY.4.2	0.000043
noncoding	208	G208-	G	-	2	2	AY.4.2	0.000043
noncoding	208	G208-	G	-	2	2	AY.4.4	0.000818
noncoding	208	G208-	G	-	2	2	AY.4.5	0.000215
noncoding	208	G208-	G	-	2	2	AY.45	0.000243
noncoding	208	G208A	G	A	2	2	AY.46.2	0.001271
noncoding	208	G208A	G	A	2	2	AY.46.4	0.000329
noncoding	208	G208-	G	-	2	2	AY.46.6	0.000144
noncoding	208	G208T	G	T	2	2	AY.46.6	0.000144
noncoding	208	G208A	G	A	2	2	AY.51	0.001818
noncoding	208	G208A	G	A	2	2	AY.55	0.001835
noncoding	208	G208-	G	-	2	2	AY.60	0.001876
noncoding	208	G208A	G	A	2	2	AY.65	0.001066
noncoding	208	G208A	G	A	2	2	AY.71	0.00095
noncoding	208	G208T	G	T	2	2	AY.73	0.001331
noncoding	208	G208T	G	T	2	2	AY.74	0.000231
noncoding	208	G208A	G	A	2	2	AY.93	0.000546
noncoding	208	G208T	G	T	2	2	B.1.1.1	0.000653
noncoding	208	G208C	G	C	2	2	B.1.1.7	0.000002
noncoding	208	G208-	G	-	2	2	B.1.160	0.000062
noncoding	208	G208-	G	-	2	2	B.1.177.18	0.00232
noncoding	208	G208V	G	V	2	2	B.1.243	0.000139
noncoding	208	G208T	G	T	2	2	B.1.258	0.000133
noncoding	208	G208T	G	T	2	2	B.1.36.29	0.001035
noncoding	208	G208-	G	-	2	2	B.1.416	0.002538
noncoding	208	G208T	G	T	2	2	B.1.596	0.000174
noncoding	208	G208-	G	-	2	2	B.1.596	0.000174
noncoding	208	G208-	G	-	2	2	N.6	0.014184
noncoding	208	G208-	G	-	2	2	P.2	0.000373
noncoding	208	G208-	G	-	1	1	A.1	0.000282
noncoding	208	G208-	G	-	1	1	AE.8	0.000489
noncoding	208	G208-	G	-	1	1	AY.100	0.000046
noncoding	208	G208C	G	C	1	1	AY.103	0.000006
noncoding	208	G208A	G	A	1	1	AY.104	0.001984
noncoding	208	G208T	G	T	1	1	AY.104	0.001984
noncoding	208	G208T	G	T	1	1	AY.105	0.000643
noncoding	208	G208A	G	A	1	1	AY.110	0.000113
noncoding	208	G208T	G	T	1	1	AY.111	0.000183
noncoding	208	G208T	G	T	1	1	AY.114	0.000231
noncoding	208	G208A	G	A	1	1	AY.114	0.000231
noncoding	208	G208-	G	-	1	1	AY.116	0.000287
noncoding	208	G208A	G	A	1	1	AY.116.1	0.000311
noncoding	208	G208A	G	A	1	1	AY.118	0.000063
noncoding	208	G208-	G	-	1	1	AY.119	0.000035
noncoding	208	G208C	G	C	1	1	AY.119	0.000035
noncoding	208	G208T	G	T	1	1	AY.120	0.000037
noncoding	208	G208-	G	-	1	1	AY.120.1	0.000321
noncoding	208	G208T	G	T	1	1	AY.14	0.000088
noncoding	208	G208C	G	C	1	1	AY.25	0.000006
noncoding	208	G208A	G	A	1	1	AY.27	0.000065
noncoding	208	G208T	G	T	1	1	AY.30	0.000396
noncoding	208	G208A	G	A	1	1	AY.34	0.000097
noncoding	208	G208T	G	T	1	1	AY.34	0.000097
noncoding	208	G208A	G	A	1	1	AY.36	0.000148
noncoding	208	G208-	G	-	1	1	AY.38	0.000499
noncoding	208	G208-	G	-	1	1	AY.39	0.000025
noncoding	208	G208-	G	-	1	1	AY.39.1	0.00004
noncoding	208	G208T	G	T	1	1	AY.4.2.1	0.000149
noncoding	208	G208-	G	-	1	1	AY.4.2.1	0.000149
noncoding	208	G208A	G	A	1	1	AY.4.5	0.000107
noncoding	208	G208A	G	A	1	1	AY.41	0.000294
noncoding	208	G208-	G	-	1	1	AY.41	0.000294
noncoding	208	G208C	G	C	1	1	AY.43	0.000004
noncoding	208	G208A	G	A	1	1	AY.45	0.000122
noncoding	208	G208-	G	-	1	1	AY.46	0.000104
noncoding	208	G208T	G	T	1	1	AY.46.3	0.000934
noncoding	208	G208-	G	-	1	1	AY.46.4	0.000165
noncoding	208	G208A	G	A	1	1	AY.47	0.000031
noncoding	208	G208T	G	T	1	1	AY.47	0.000031
noncoding	208	G208-	G	-	1	1	AY.47	0.000031
noncoding	208	G208-	G	-	1	1	AY.5	0.000021
noncoding	208	G208T	G	T	1	1	AY.5.2	0.002463
noncoding	208	G208A	G	A	1	1	AY.53	0.000288
noncoding	208	G208T	G	T	1	1	AY.57	0.000656
noncoding	208	G208-	G	-	1	1	AY.59	0.00053
noncoding	208	G208-	G	-	1	1	AY.6	0.000041
noncoding	208	G208A	G	A	1	1	AY.67	0.000464
noncoding	208	G208A	G	A	1	1	AY.68	0.000274
noncoding	208	G208-	G	-	1	1	AY.68	0.000274
noncoding	208	G208A	G	A	1	1	AY.69	0.000187
noncoding	208	G208T	G	T	1	1	AY.69	0.000187
noncoding	208	G208A	G	A	1	1	AY.70	0.000209
noncoding	208	G208T	G	T	1	1	AY.71	0.000475
noncoding	208	G208A	G	A	1	1	AY.74	0.000116
noncoding	208	G208T	G	T	1	1	AY.75	0.000056
noncoding	208	G208-	G	-	1	1	AY.75.1	0.00018
noncoding	208	G208T	G	T	1	1	AY.77	0.001127
noncoding	208	G208A	G	A	1	1	AY.79	0.001211
noncoding	208	G208T	G	T	1	1	AY.84	0.000437
noncoding	208	G208A	G	A	1	1	AY.84	0.000437
noncoding	208	G208-	G	-	1	1	AY.9	0.000068
noncoding	208	G208A	G	A	1	1	AY.9.1	0.000084
noncoding	208	G208A	G	A	1	1	AY.92	0.000287
noncoding	208	G208-	G	-	1	1	AY.94	0.000443
noncoding	208	G208-	G	-	1	1	AY.95	0.000761
noncoding	208	G208A	G	A	1	1	AY.98	0.000079
noncoding	208	G208T	G	T	1	1	AY.98.1	0.000048
noncoding	208	G208-	G	-	1	1	AY.98.1	0.000048
noncoding	208	G208T	G	T	1	1	B	0.000128
noncoding	208	G208V	G	V	1	1	B.1.1	0.000018
noncoding	208	G208-	G	-	1	1	B.1.1.139	0.022727
noncoding	208	G208-	G	-	1	1	B.1.1.170	0.001247
noncoding	208	G208T	G	T	1	1	B.1.1.222	0.000204
noncoding	208	G208-	G	-	1	1	B.1.1.232	0.001815
noncoding	208	G208T	G	T	1	1	B.1.1.25	0.000569
noncoding	208	G208-	G	-	1	1	B.1.1.269	0.001353
noncoding	208	G208T	G	T	1	1	B.1.1.302	0.002075
noncoding	208	G208-	G	-	1	1	B.1.1.311	0.000358
noncoding	208	G208-	G	-	1	1	B.1.1.322	0.008772
noncoding	208	G208-	G	-	1	1	B.1.1.409	0.002833
noncoding	208	G208T	G	T	1	1	B.1.1.437	0.010417
noncoding	208	G208-	G	-	1	1	B.1.1.44	0.00241
noncoding	208	G208T	G	T	1	1	B.1.1.518	0.006329
noncoding	208	G208A	G	A	1	1	B.1.1.7	0.000001
noncoding	208	G208-	G	-	1	1	B.1.1.89	0.006061
noncoding	208	G208T	G	T	1	1	B.1.119	0.010526
noncoding	208	G208-	G	-	1	1	B.1.160.23	0.004831
noncoding	208	G208T	G	T	1	1	B.1.169	0.014925
noncoding	208	G208T	G	T	1	1	B.1.177	0.000013
noncoding	208	G208A	G	A	1	1	B.1.177	0.000013
noncoding	208	G208T	G	T	1	1	B.1.177.11	0.001698
noncoding	208	G208-	G	-	1	1	B.1.177.21	0.000076
noncoding	208	G208-	G	-	1	1	B.1.177.62	0.001192
noncoding	208	G208A	G	A	1	1	B.1.177.81	0.000189
noncoding	208	G208T	G	T	1	1	B.1.179	0.003759
noncoding	208	G208A	G	A	1	1	B.1.2	0.000009
noncoding	208	G208T	G	T	1	1	B.1.2	0.000009
noncoding	208	G208T	G	T	1	1	B.1.214.2	0.0006
noncoding	208	G208-	G	-	1	1	B.1.225	0.015385
noncoding	208	G208T	G	T	1	1	B.1.232	0.000537
noncoding	208	G208T	G	T	1	1	B.1.234	0.000132
noncoding	208	G208-	G	-	1	1	B.1.243	0.00007
noncoding	208	G208-	G	-	1	1	B.1.258	0.000067
noncoding	208	G208-	G	-	1	1	B.1.315	0.006061
noncoding	208	G208T	G	T	1	1	B.1.348	0.018182
noncoding	208	G208T	G	T	1	1	B.1.356	0.001727
noncoding	208	G208-	G	-	1	1	B.1.36	0.000146
noncoding	208	G208T	G	T	1	1	B.1.36.10	0.004785
noncoding	208	G208T	G	T	1	1	B.1.367	0.000792
noncoding	208	G208T	G	T	1	1	B.1.371	0.001122
noncoding	208	G208T	G	T	1	1	B.1.389	0.001002
noncoding	208	G208T	G	T	1	1	B.1.429	0.000024
noncoding	208	G208T	G	T	1	1	B.1.524	0.001406
noncoding	208	G208T	G	T	1	1	B.1.525	0.000113
noncoding	208	G208T	G	T	1	1	B.1.526	0.000024
noncoding	208	G208-	G	-	1	1	B.1.526	0.000024
noncoding	208	G208-	G	-	1	1	B.1.573	0.006098
noncoding	208	G208-	G	-	1	1	B.10	0.008264
noncoding	208	G208-	G	-	1	1	C.35	0.000774
noncoding	208	G208-	G	-	1	1	D.2	0.000075
noncoding	208	G208T	G	T	1	1	D.2	0.000075
noncoding	208	G208-	G	-	1	1	N.4	0.004255
noncoding	208	G208T	G	T	1	1	Q.3	0.000145
noncoding	208	G208-	G	-	1	1	Q.7	0.001111
noncoding	208	G208-	G	-	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.