CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 204 | G204A | noncoding | G | A | 2831 | 2831 | 1 | 204-204 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 204 | G204A | G | A | 2831 | 2831 | All | 0.000541 |
noncoding | 204 | G204A | G | A | 383 | 383 | B.1.1.7 | 0.000343 |
noncoding | 204 | G204A | G | A | 274 | 274 | AY.9.2 | 0.010064 |
noncoding | 204 | G204A | G | A | 255 | 255 | B.1.1.337 | 0.917266 |
noncoding | 204 | G204A | G | A | 195 | 195 | AY.4 | 0.000304 |
noncoding | 204 | G204A | G | A | 178 | 178 | B.1.234 | 0.023486 |
noncoding | 204 | G204A | G | A | 168 | 168 | AY.99.2 | 0.015482 |
noncoding | 204 | G204A | G | A | 146 | 146 | AY.103 | 0.000907 |
noncoding | 204 | G204A | G | A | 122 | 122 | AY.44 | 0.000743 |
noncoding | 204 | G204A | G | A | 99 | 99 | B.1.617.2 | 0.000373 |
noncoding | 204 | G204A | G | A | 83 | 83 | AY.29 | 0.001309 |
noncoding | 204 | G204A | G | A | 81 | 81 | B.1.1.229 | 0.465517 |
noncoding | 204 | G204A | G | A | 62 | 62 | B.1.177.84 | 0.413333 |
noncoding | 204 | G204A | G | A | 56 | 56 | B.1 | 0.000513 |
noncoding | 204 | G204A | G | A | 44 | 44 | AY.41 | 0.012934 |
noncoding | 204 | G204A | G | A | 44 | 44 | AY.6 | 0.00181 |
noncoding | 204 | G204A | G | A | 43 | 43 | AY.25 | 0.000259 |
noncoding | 204 | G204A | G | A | 41 | 41 | AY.113 | 0.005838 |
noncoding | 204 | G204A | G | A | 38 | 38 | B.1.2 | 0.000335 |
noncoding | 204 | G204A | G | A | 33 | 33 | AY.43 | 0.000146 |
noncoding | 204 | G204A | G | A | 30 | 30 | AY.20 | 0.001166 |
noncoding | 204 | G204A | G | A | 25 | 25 | B.1.429 | 0.000588 |
noncoding | 204 | G204A | G | A | 23 | 23 | AY.5 | 0.000475 |
noncoding | 204 | G204A | G | A | 21 | 21 | AY.3 | 0.000209 |
noncoding | 204 | G204A | G | A | 21 | 21 | B.1.1 | 0.000381 |
noncoding | 204 | G204A | G | A | 16 | 16 | B.1.177.15 | 0.010095 |
noncoding | 204 | G204A | G | A | 16 | 16 | P.1.17 | 0.002588 |
noncoding | 204 | G204A | G | A | 14 | 14 | AY.102 | 0.000371 |
noncoding | 204 | G204A | G | A | 14 | 14 | AY.4.2 | 0.000304 |
noncoding | 204 | G204A | G | A | 13 | 13 | AY.47 | 0.000404 |
noncoding | 204 | G204A | G | A | 12 | 12 | AY.100 | 0.000552 |
noncoding | 204 | G204A | G | A | 11 | 11 | B.1.177.81 | 0.002083 |
noncoding | 204 | G204A | G | A | 10 | 10 | AY.23 | 0.000697 |
noncoding | 204 | G204A | G | A | 10 | 10 | B.1.1.306 | 0.004384 |
noncoding | 204 | G204A | G | A | 10 | 10 | P.1 | 0.000158 |
noncoding | 204 | G204A | G | A | 9 | 9 | AY.26 | 0.000255 |
noncoding | 204 | G204A | G | A | 7 | 7 | AY.36 | 0.001037 |
noncoding | 204 | G204A | G | A | 7 | 7 | AY.39 | 0.000173 |
noncoding | 204 | G204A | G | A | 7 | 7 | AY.46 | 0.000729 |
noncoding | 204 | G204A | G | A | 7 | 7 | B.1.1.519 | 0.000278 |
noncoding | 204 | G204A | G | A | 7 | 7 | B.1.36.18 | 0.002941 |
noncoding | 204 | G204A | G | A | 7 | 7 | B.1.617.1 | 0.000903 |
noncoding | 204 | G204A | G | A | 7 | 7 | C.1 | 0.016746 |
noncoding | 204 | G204A | G | A | 6 | 6 | AY.53 | 0.001725 |
noncoding | 204 | G204A | G | A | 5 | 5 | AY.33 | 0.000334 |
noncoding | 204 | G204A | G | A | 5 | 5 | B.1.596 | 0.000436 |
noncoding | 204 | G204A | G | A | 4 | 4 | AY.120 | 0.000149 |
noncoding | 204 | G204A | G | A | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 204 | G204A | G | A | 4 | 4 | B.1.351 | 0.000119 |
noncoding | 204 | G204A | G | A | 4 | 4 | B.1.621 | 0.000354 |
noncoding | 204 | G204A | G | A | 4 | 4 | B.1.621.1 | 0.002023 |
noncoding | 204 | G204A | G | A | 4 | 4 | B.1.637 | 0.000292 |
noncoding | 204 | G204A | G | A | 4 | 4 | D.2 | 0.0003 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.114 | 0.000693 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.118 | 0.000188 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.37 | 0.000948 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.4.4 | 0.001227 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.75 | 0.000168 |
noncoding | 204 | G204A | G | A | 3 | 3 | AY.98.1 | 0.000145 |
noncoding | 204 | G204A | G | A | 3 | 3 | B.1.1.63 | 0.001157 |
noncoding | 204 | G204A | G | A | 3 | 3 | B.1.177.4 | 0.000633 |
noncoding | 204 | G204A | G | A | 3 | 3 | B.1.232 | 0.001612 |
noncoding | 204 | G204A | G | A | 3 | 3 | B.1.258 | 0.0002 |
noncoding | 204 | G204A | G | A | 3 | 3 | B.1.427 | 0.000151 |
noncoding | 204 | G204A | G | A | 3 | 3 | P.1.6 | 0.005837 |
noncoding | 204 | G204A | G | A | 3 | 3 | Q.8 | 0.000495 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.107 | 0.000932 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.117 | 0.000169 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.119 | 0.000071 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.34 | 0.000194 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.39.1 | 0.000079 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.42 | 0.00008 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.46.1 | 0.002053 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.5.4 | 0.000553 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.54 | 0.000191 |
noncoding | 204 | G204A | G | A | 2 | 2 | AY.99 | 0.002099 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.1.359 | 0.055556 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.1.374 | 0.004751 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.111 | 0.00235 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.236 | 0.004107 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.329 | 0.001215 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.36 | 0.000292 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.404 | 0.002604 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.526 | 0.000047 |
noncoding | 204 | G204A | G | A | 2 | 2 | B.1.609 | 0.000959 |
noncoding | 204 | G204A | G | A | 2 | 2 | P.1.7 | 0.000639 |
noncoding | 204 | G204A | G | A | 1 | 1 | AA.2 | 0.007692 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.111 | 0.000183 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.115 | 0.005208 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.116 | 0.000287 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.16 | 0.00038 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.23.1 | 0.000417 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.27 | 0.000065 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.29.1 | 0.000221 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.45 | 0.000122 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.46.6 | 0.000072 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.55 | 0.000917 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.58 | 0.000907 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.59 | 0.00053 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.61 | 0.000105 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.92 | 0.000287 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.93 | 0.000273 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.94 | 0.000443 |
noncoding | 204 | G204A | G | A | 1 | 1 | AY.98 | 0.000079 |
noncoding | 204 | G204A | G | A | 1 | 1 | AZ.3 | 0.00152 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.214 | 0.000055 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.251 | 0.007937 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.343 | 0.020833 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.413 | 0.006897 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.419 | 0.007407 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.485 | 0.016667 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.1.526 | 0.003546 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.13 | 0.002375 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.158 | 0.02381 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.177.12 | 0.000152 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.177.86 | 0.000183 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.179 | 0.003759 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.210 | 0.002132 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.258.17 | 0.000104 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.356 | 0.001727 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.36.29 | 0.000517 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.366 | 0.004878 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.416.1 | 0.001563 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.432 | 0.011236 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.456 | 0.003268 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.470 | 0.001404 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.580 | 0.004065 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.581 | 0.009434 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.588 | 0.00091 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.610 | 0.003546 |
noncoding | 204 | G204A | G | A | 1 | 1 | B.1.617.3 | 0.002985 |
noncoding | 204 | G204A | G | A | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 204 | G204A | G | A | 1 | 1 | Q.1 | 0.000126 |
noncoding | 204 | G204A | G | A | 1 | 1 | Q.3 | 0.000145 |
noncoding | 204 | G204A | G | A | 1 | 1 | Q.4 | 0.000455 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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