CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 199 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding199G199TnoncodingGT370537051199-199

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding199G199TGT37053705All0.000709
noncoding199G199TGT21972197B.1.1.70.001967
noncoding199G199TGT241241AD.10.99177
noncoding199G199TGT180180AY.40.00028
noncoding199G199TGT127127B.1.160.180.927007
noncoding199G199TGT117117B.1.1600.003649
noncoding199G199TGT8585B.1.617.20.00032
noncoding199G199TGT7777B.1.4290.001812
noncoding199G199TGT6868B.1.1.550.883117
noncoding199G199TGT5353B.1.20.000467
noncoding199G199TGT3939AY.430.000173
noncoding199G199TGT3636B.10.00033
noncoding199G199TGT3434AY.440.000207
noncoding199G199TGT3333AY.290.000521
noncoding199G199TGT2727AY.1020.000716
noncoding199G199TGT2424AY.250.000144
noncoding199G199TGT2424B.1.1.3150.20339
noncoding199G199TGT2020P.10.000315
noncoding199G199TGT1818B.1.5650.014587
noncoding199G199TGT1414AY.50.000289
noncoding199G199TGT1414B.1.10.000254
noncoding199G199TGT1414B.1.3510.000416
noncoding199G199TGT1212AY.1030.000075
noncoding199G199TGT1111AY.420.000443
noncoding199G199TGT99AY.1070.004194
noncoding199G199TGT99AY.34.10.004589
noncoding199G199TGT88AY.390.000198
noncoding199G199TGT88AY.98.10.000387
noncoding199G199TGT77AY.330.000467
noncoding199G199TGT66AY.120.10.001926
noncoding199G199TGT66B.1.177.750.006243
noncoding199G199TGT55AY.4.20.000108
noncoding199G199TGT55AY.9.20.000184
noncoding199G199TGT55B.1.1770.000066
noncoding199G199TGT55C.370.00058
noncoding199G199TGT55P.1.140.000239
noncoding199G199TGT44AY.1210.000541
noncoding199G199TGT44AY.200.000155
noncoding199G199TGT44AY.260.000113
noncoding199G199TGT44AY.540.000381
noncoding199G199TGT44AY.630.001547
noncoding199G199TGT44B.1.1.250.002274
noncoding199G199TGT44B.1.2210.000284
noncoding199G199TGT44B.1.3110.001098
noncoding199G199TGT44B.1.3620.006163
noncoding199G199TGT44B.1.4020.039216
noncoding199G199TGT44B.1.5260.000094
noncoding199G199TGT44B.1.5960.000349
noncoding199G199TGT33AY.4.10.002212
noncoding199G199TGT33AY.4.40.001227
noncoding199G199TGT33AY.460.000312
noncoding199G199TGT33AY.470.000093
noncoding199G199TGT33AY.730.001996
noncoding199G199TGT33AY.740.000347
noncoding199G199TGT33B.1.1.5190.000119
noncoding199G199TGT33B.1.3690.000856
noncoding199G199TGT33C.36.30.001702
noncoding199G199TGT22AY.1000.000092
noncoding199G199TGT22AY.1170.000169
noncoding199G199TGT22AY.1200.000074
noncoding199G199TGT22AY.29.10.000441
noncoding199G199TGT22AY.340.000194
noncoding199G199TGT22AY.610.00021
noncoding199G199TGT22AY.670.000929
noncoding199G199TGT22AY.890.009804
noncoding199G199TGT22B.1.177.600.000437
noncoding199G199TGT22B.1.351.20.000605
noncoding199G199TGT22B.1.36.80.002
noncoding199G199TGT22B.1.3970.009709
noncoding199G199TGT22B.1.4000.000858
noncoding199G199TGT11AD.20.000219
noncoding199G199TGT11AY.1050.000643
noncoding199G199TGT11AY.1130.000142
noncoding199G199TGT11AY.1160.000287
noncoding199G199TGT11AY.1180.000063
noncoding199G199TGT11AY.1190.000035
noncoding199G199TGT11AY.130.000161
noncoding199G199TGT11AY.160.00038
noncoding199G199TGT11AY.190.00114
noncoding199G199TGT11AY.230.00007
noncoding199G199TGT11AY.30.00001
noncoding199G199TGT11AY.3.10.000085
noncoding199G199TGT11AY.380.000499
noncoding199G199TGT11AY.39.10.00004
noncoding199G199TGT11AY.4.50.000107
noncoding199G199TGT11AY.410.000294
noncoding199G199TGT11AY.450.000122
noncoding199G199TGT11AY.46.50.000198
noncoding199G199TGT11AY.60.000041
noncoding199G199TGT11AY.620.000436
noncoding199G199TGT11AY.650.000533
noncoding199G199TGT11AY.710.000475
noncoding199G199TGT11AY.850.000427
noncoding199G199TGT11B0.000128
noncoding199G199TGT11B.1.1.2690.001353
noncoding199G199TGT11B.1.1.2740.005051
noncoding199G199TGT11B.1.1.3060.000438
noncoding199G199TGT11B.1.1.4090.002833
noncoding199G199TGT11B.1.1270.002198
noncoding199G199TGT11B.1.160.90.007194
noncoding199G199TGT11B.1.177.40.000211
noncoding199G199TGT11B.1.177.730.000566
noncoding199G199TGT11B.1.2580.000067
noncoding199G199TGT11B.1.3200.001245
noncoding199G199TGT11B.1.3240.001605
noncoding199G199TGT11B.1.351.30.000876
noncoding199G199TGT11B.1.360.000146
noncoding199G199TGT11B.1.36.170.000494
noncoding199G199TGT11B.1.36.290.000517
noncoding199G199TGT11B.1.3750.00082
noncoding199G199TGT11B.1.3780.006849
noncoding199G199TGT11B.1.3960.000706
noncoding199G199TGT11B.1.3980.002976
noncoding199G199TGT11B.1.4330.003195
noncoding199G199TGT11B.1.4530.003236
noncoding199G199TGT11B.1.466.20.000391
noncoding199G199TGT11B.1.5090.000866
noncoding199G199TGT11B.1.5380.008065
noncoding199G199TGT11B.1.5610.000397
noncoding199G199TGT11B.1.5670.003333
noncoding199G199TGT11B.1.595.10.005848
noncoding199G199TGT11B.1.617.10.000129
noncoding199G199TGT11B.40.002208
noncoding199G199TGT11C.180.002591
noncoding199G199TGT11D.20.000075
noncoding199G199TGT11P.1.100.000269
noncoding199G199TGT11P.1.70.000319
noncoding199G199TGT11P.20.000187
noncoding199G199TGT11Q.10.000126
noncoding199G199TGT11Q.80.000165
noncoding199G199TGT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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