CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 199

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding199G199TnoncodingGT370537051199-199
noncoding199G199-noncodingG-5695691199-199
noncoding199G199AnoncodingGA4074071199-199
noncoding199G199CnoncodingGC11111199-199

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding199G199TGT37053705All0.000709
noncoding199G199TGT21972197B.1.1.70.001967
noncoding199G199-G-569569All0.000109
noncoding199G199AGA407407All0.000078
noncoding199G199TGT241241AD.10.99177
noncoding199G199TGT180180AY.40.00028
noncoding199G199TGT127127B.1.160.180.927007
noncoding199G199TGT117117B.1.1600.003649
noncoding199G199TGT8585B.1.617.20.00032
noncoding199G199TGT7777B.1.4290.001812
noncoding199G199AGA7373B.10.000669
noncoding199G199TGT6868B.1.1.550.883117
noncoding199G199-G-5757B.1.1.70.000051
noncoding199G199AGA5454B.1.1.70.000048
noncoding199G199TGT5353B.1.20.000467
noncoding199G199-G-5252AY.1030.000323
noncoding199G199AGA4646AY.40.000072
noncoding199G199-G-4242AY.3.10.003581
noncoding199G199TGT3939AY.430.000173
noncoding199G199AGA3838B.1.1770.0005
noncoding199G199-G-3737AY.440.000225
noncoding199G199TGT3636B.10.00033
noncoding199G199-G-3535AY.430.000155
noncoding199G199TGT3434AY.440.000207
noncoding199G199TGT3333AY.290.000521
noncoding199G199-G-3131AY.40.000048
noncoding199G199TGT2727AY.1020.000716
noncoding199G199-G-2525B.10.000229
noncoding199G199TGT2424AY.250.000144
noncoding199G199TGT2424B.1.1.3150.20339
noncoding199G199AGA2323AY.1190.000812
noncoding199G199-G-2222AY.250.000132
noncoding199G199-G-2121B.1.564.10.033123
noncoding199G199TGT2020P.10.000315
noncoding199G199TGT1818B.1.5650.014587
noncoding199G199-G-1818B.1.617.20.000068
noncoding199G199-G-1717B.1.4010.139344
noncoding199G199AGA1717B.1.617.20.000064
noncoding199G199AGA1616AY.1030.000099
noncoding199G199-G-1515AY.1170.001268
noncoding199G199AGA1515AY.30.000149
noncoding199G199TGT1414AY.50.000289
noncoding199G199TGT1414B.1.10.000254
noncoding199G199AGA1414B.1.1600.000437
noncoding199G199-G-1414B.1.20.000123
noncoding199G199TGT1414B.1.3510.000416
noncoding199G199AGA1313AY.250.000078
noncoding199G199TGT1212AY.1030.000075
noncoding199G199CGC1111All0.000002
noncoding199G199TGT1111AY.420.000443
noncoding199G199AGA99AT.10.046154
noncoding199G199TGT99AY.1070.004194
noncoding199G199-G-99AY.230.000628
noncoding199G199TGT99AY.34.10.004589
noncoding199G199-G-99B.1.1600.000281
noncoding199G199-G-88AY.1190.000282
noncoding199G199-G-88AY.30.00008
noncoding199G199TGT88AY.390.000198
noncoding199G199TGT88AY.98.10.000387
noncoding199G199TGT77AY.330.000467
noncoding199G199-G-77B.1.1770.000092
noncoding199G199TGT66AY.120.10.001926
noncoding199G199-G-66AY.200.000233
noncoding199G199AGA66AY.430.000027
noncoding199G199AGA66AY.7.10.000676
noncoding199G199TGT66B.1.177.750.006243
noncoding199G199-G-66B.1.3510.000178
noncoding199G199AGA66C.370.000696
noncoding199G199TGT55AY.4.20.000108
noncoding199G199AGA55AY.440.00003
noncoding199G199TGT55AY.9.20.000184
noncoding199G199AGA55B.1.1.5190.000199
noncoding199G199TGT55B.1.1770.000066
noncoding199G199CGC55B.1.617.20.000019
noncoding199G199TGT55C.370.00058
noncoding199G199TGT55P.1.140.000239
noncoding199G199TGT44AY.1210.000541
noncoding199G199-G-44AY.130.000644
noncoding199G199TGT44AY.200.000155
noncoding199G199TGT44AY.260.000113
noncoding199G199AGA44AY.4.20.000087
noncoding199G199TGT44AY.540.000381
noncoding199G199TGT44AY.630.001547
noncoding199G199-G-44AY.9.10.000335
noncoding199G199TGT44B.1.1.250.002274
noncoding199G199-G-44B.1.1.330.001684
noncoding199G199-G-44B.1.1.3480.003185
noncoding199G199TGT44B.1.2210.000284
noncoding199G199TGT44B.1.3110.001098
noncoding199G199TGT44B.1.3620.006163
noncoding199G199TGT44B.1.4020.039216
noncoding199G199-G-44B.1.4290.000094
noncoding199G199TGT44B.1.5260.000094
noncoding199G199TGT44B.1.5960.000349
noncoding199G199AGA33AY.1020.00008
noncoding199G199AGA33AY.1180.000188
noncoding199G199-G-33AY.1200.000112
noncoding199G199-G-33AY.240.001293
noncoding199G199AGA33AY.290.000047
noncoding199G199-G-33AY.330.0002
noncoding199G199TGT33AY.4.10.002212
noncoding199G199TGT33AY.4.40.001227
noncoding199G199CGC33AY.430.000013
noncoding199G199TGT33AY.460.000312
noncoding199G199-G-33AY.46.60.000217
noncoding199G199TGT33AY.470.000093
noncoding199G199TGT33AY.730.001996
noncoding199G199TGT33AY.740.000347
noncoding199G199-G-33B.1.1.500.002037
noncoding199G199TGT33B.1.1.5190.000119
noncoding199G199-G-33B.1.2340.000396
noncoding199G199AGA33B.1.258.170.000312
noncoding199G199TGT33B.1.3690.000856
noncoding199G199TGT33C.36.30.001702
noncoding199G199AGA33P.10.000047
noncoding199G199-G-33P.10.000047
noncoding199G199-G-33P.1.140.000143
noncoding199G199-G-22AY.10.000791
noncoding199G199TGT22AY.1000.000092
noncoding199G199-G-22AY.1020.000053
noncoding199G199AGA22AY.1100.000225
noncoding199G199TGT22AY.1170.000169
noncoding199G199-G-22AY.120.000632
noncoding199G199TGT22AY.1200.000074
noncoding199G199TGT22AY.29.10.000441
noncoding199G199AGA22AY.330.000134
noncoding199G199TGT22AY.340.000194
noncoding199G199-G-22AY.34.10.00102
noncoding199G199-G-22AY.370.000632
noncoding199G199-G-22AY.4.20.000043
noncoding199G199-G-22AY.4.40.000818
noncoding199G199-G-22AY.4.50.000215
noncoding199G199-G-22AY.450.000243
noncoding199G199-G-22AY.460.000208
noncoding199G199-G-22AY.600.001876
noncoding199G199TGT22AY.610.00021
noncoding199G199TGT22AY.670.000929
noncoding199G199TGT22AY.890.009804
noncoding199G199AGA22B.1.1.1890.003026
noncoding199G199AGA22B.1.1.630.000772
noncoding199G199-G-22B.1.160.180.014599
noncoding199G199TGT22B.1.177.600.000437
noncoding199G199-G-22B.1.177.820.000955
noncoding199G199AGA22B.1.20.000018
noncoding199G199TGT22B.1.351.20.000605
noncoding199G199AGA22B.1.351.20.000605
noncoding199G199AGA22B.1.3560.003454
noncoding199G199TGT22B.1.36.80.002
noncoding199G199TGT22B.1.3970.009709
noncoding199G199TGT22B.1.4000.000858
noncoding199G199-G-22B.1.4050.024691
noncoding199G199-G-22B.1.4160.002538
noncoding199G199AGA22B.1.4290.000047
noncoding199G199-G-22B.1.5960.000174
noncoding199G199AGA22B.1.6210.000177
noncoding199G199-G-22N.60.014184
noncoding199G199-G-22P.20.000373
noncoding199G199AGA22R.10.00018
noncoding199G199-G-11A.10.000282
noncoding199G199TGT11AD.20.000219
noncoding199G199AGA11AE.80.000489
noncoding199G199-G-11AE.80.000489
noncoding199G199AGA11AY.1000.000046
noncoding199G199-G-11AY.1000.000046
noncoding199G199TGT11AY.1050.000643
noncoding199G199TGT11AY.1130.000142
noncoding199G199TGT11AY.1160.000287
noncoding199G199-G-11AY.1160.000287
noncoding199G199TGT11AY.1180.000063
noncoding199G199TGT11AY.1190.000035
noncoding199G199-G-11AY.120.10.000321
noncoding199G199TGT11AY.130.000161
noncoding199G199TGT11AY.160.00038
noncoding199G199TGT11AY.190.00114
noncoding199G199AGA11AY.200.000039
noncoding199G199TGT11AY.230.00007
noncoding199G199-G-11AY.260.000028
noncoding199G199TGT11AY.30.00001
noncoding199G199TGT11AY.3.10.000085
noncoding199G199TGT11AY.380.000499
noncoding199G199-G-11AY.380.000499
noncoding199G199-G-11AY.390.000025
noncoding199G199AGA11AY.390.000025
noncoding199G199-G-11AY.39.10.00004
noncoding199G199AGA11AY.39.10.00004
noncoding199G199TGT11AY.39.10.00004
noncoding199G199CGC11AY.40.000002
noncoding199G199-G-11AY.4.2.10.000149
noncoding199G199TGT11AY.4.50.000107
noncoding199G199CGC11AY.400.000964
noncoding199G199TGT11AY.410.000294
noncoding199G199-G-11AY.410.000294
noncoding199G199TGT11AY.450.000122
noncoding199G199-G-11AY.46.40.000165
noncoding199G199TGT11AY.46.50.000198
noncoding199G199-G-11AY.470.000031
noncoding199G199-G-11AY.50.000021
noncoding199G199-G-11AY.590.00053
noncoding199G199-G-11AY.60.000041
noncoding199G199TGT11AY.60.000041
noncoding199G199TGT11AY.620.000436
noncoding199G199TGT11AY.650.000533
noncoding199G199-G-11AY.680.000274
noncoding199G199TGT11AY.710.000475
noncoding199G199-G-11AY.740.000116
noncoding199G199-G-11AY.75.10.00018
noncoding199G199TGT11AY.850.000427
noncoding199G199-G-11AY.90.000068
noncoding199G199-G-11AY.940.000443
noncoding199G199-G-11AY.950.000761
noncoding199G199-G-11AY.98.10.000048
noncoding199G199AGA11B0.000128
noncoding199G199TGT11B0.000128
noncoding199G199AGA11B.1.10.000018
noncoding199G199-G-11B.1.1.1390.022727
noncoding199G199-G-11B.1.1.1700.001247
noncoding199G199-G-11B.1.1.2320.001815
noncoding199G199-G-11B.1.1.2690.001353
noncoding199G199TGT11B.1.1.2690.001353
noncoding199G199TGT11B.1.1.2740.005051
noncoding199G199TGT11B.1.1.3060.000438
noncoding199G199AGA11B.1.1.3060.000438
noncoding199G199-G-11B.1.1.3110.000358
noncoding199G199-G-11B.1.1.3220.008772
noncoding199G199TGT11B.1.1.4090.002833
noncoding199G199-G-11B.1.1.4090.002833
noncoding199G199-G-11B.1.1.440.00241
noncoding199G199AGA11B.1.1.700.000341
noncoding199G199-G-11B.1.1.890.006061
noncoding199G199TGT11B.1.1270.002198
noncoding199G199-G-11B.1.160.230.004831
noncoding199G199TGT11B.1.160.90.007194
noncoding199G199-G-11B.1.177.180.00116
noncoding199G199-G-11B.1.177.210.000076
noncoding199G199TGT11B.1.177.40.000211
noncoding199G199-G-11B.1.177.570.000281
noncoding199G199-G-11B.1.177.620.001192
noncoding199G199TGT11B.1.177.730.000566
noncoding199G199AGA11B.1.2210.000071
noncoding199G199-G-11B.1.2430.00007
noncoding199G199TGT11B.1.2580.000067
noncoding199G199-G-11B.1.2580.000067
noncoding199G199AGA11B.1.258.140.00098
noncoding199G199-G-11B.1.3150.006061
noncoding199G199TGT11B.1.3200.001245
noncoding199G199TGT11B.1.3240.001605
noncoding199G199AGA11B.1.3510.00003
noncoding199G199TGT11B.1.351.30.000876
noncoding199G199-G-11B.1.360.000146
noncoding199G199TGT11B.1.360.000146
noncoding199G199TGT11B.1.36.170.000494
noncoding199G199TGT11B.1.36.290.000517
noncoding199G199AGA11B.1.3610.001289
noncoding199G199-G-11B.1.3620.001541
noncoding199G199TGT11B.1.3750.00082
noncoding199G199TGT11B.1.3780.006849
noncoding199G199TGT11B.1.3960.000706
noncoding199G199TGT11B.1.3980.002976
noncoding199G199TGT11B.1.4330.003195
noncoding199G199AGA11B.1.4380.006536
noncoding199G199TGT11B.1.4530.003236
noncoding199G199AGA11B.1.4560.003268
noncoding199G199TGT11B.1.466.20.000391
noncoding199G199TGT11B.1.5090.000866
noncoding199G199AGA11B.1.5260.000024
noncoding199G199-G-11B.1.5260.000024
noncoding199G199TGT11B.1.5380.008065
noncoding199G199TGT11B.1.5610.000397
noncoding199G199TGT11B.1.5670.003333
noncoding199G199-G-11B.1.5730.006098
noncoding199G199AGA11B.1.5950.000261
noncoding199G199TGT11B.1.595.10.005848
noncoding199G199AGA11B.1.6040.017241
noncoding199G199TGT11B.1.617.10.000129
noncoding199G199CGC11B.1.617.30.002985
noncoding199G199-G-11B.100.008264
noncoding199G199TGT11B.40.002208
noncoding199G199AGA11B.400.000364
noncoding199G199TGT11C.180.002591
noncoding199G199AGA11C.270.018519
noncoding199G199-G-11C.350.000774
noncoding199G199TGT11D.20.000075
noncoding199G199-G-11D.20.000075
noncoding199G199-G-11N.40.004255
noncoding199G199TGT11P.1.100.000269
noncoding199G199AGA11P.1.150.000232
noncoding199G199TGT11P.1.70.000319
noncoding199G199TGT11P.20.000187
noncoding199G199AGA11Q.10.000126
noncoding199G199TGT11Q.10.000126
noncoding199G199-G-11Q.70.001111
noncoding199G199-G-11Q.80.000165
noncoding199G199TGT11Q.80.000165
noncoding199G199TGT11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.