CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 193 | C193T | noncoding | C | T | 11365 | 11365 | 1 | 193-193 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 193 | C193T | C | T | 11365 | 11365 | All | 0.002174 |
noncoding | 193 | C193T | C | T | 9040 | 9040 | AY.54 | 0.861937 |
noncoding | 193 | C193T | C | T | 1077 | 1077 | B.1.617.2 | 0.004055 |
noncoding | 193 | C193T | C | T | 226 | 226 | B.1.1.7 | 0.000202 |
noncoding | 193 | C193T | C | T | 144 | 144 | AY.44 | 0.000876 |
noncoding | 193 | C193T | C | T | 104 | 104 | B.1.369 | 0.029663 |
noncoding | 193 | C193T | C | T | 82 | 82 | AY.4 | 0.000128 |
noncoding | 193 | C193T | C | T | 52 | 52 | AY.46.6 | 0.003755 |
noncoding | 193 | C193T | C | T | 44 | 44 | B.1.525 | 0.004979 |
noncoding | 193 | C193T | C | T | 38 | 38 | AZ.2 | 0.031199 |
noncoding | 193 | C193T | C | T | 28 | 28 | AY.29 | 0.000442 |
noncoding | 193 | C193T | C | T | 27 | 27 | B.1.427 | 0.001363 |
noncoding | 193 | C193T | C | T | 24 | 24 | AY.102 | 0.000636 |
noncoding | 193 | C193T | C | T | 21 | 21 | B.1.36 | 0.003064 |
noncoding | 193 | C193T | C | T | 20 | 20 | B.1.2 | 0.000176 |
noncoding | 193 | C193T | C | T | 19 | 19 | AY.6 | 0.000781 |
noncoding | 193 | C193T | C | T | 18 | 18 | AY.43 | 0.00008 |
noncoding | 193 | C193T | C | T | 17 | 17 | B.1 | 0.000156 |
noncoding | 193 | C193T | C | T | 15 | 15 | P.1 | 0.000236 |
noncoding | 193 | C193T | C | T | 14 | 14 | AY.25 | 0.000084 |
noncoding | 193 | C193T | C | T | 14 | 14 | B.1.311 | 0.003844 |
noncoding | 193 | C193T | C | T | 14 | 14 | B.1.351 | 0.000416 |
noncoding | 193 | C193T | C | T | 13 | 13 | AY.103 | 0.000081 |
noncoding | 193 | C193T | C | T | 13 | 13 | AY.110 | 0.001465 |
noncoding | 193 | C193T | C | T | 13 | 13 | AY.62 | 0.005664 |
noncoding | 193 | C193T | C | T | 12 | 12 | B.1.621 | 0.001062 |
noncoding | 193 | C193T | C | T | 11 | 11 | AY.23 | 0.000767 |
noncoding | 193 | C193T | C | T | 10 | 10 | AY.16 | 0.003797 |
noncoding | 193 | C193T | C | T | 10 | 10 | AY.20 | 0.000389 |
noncoding | 193 | C193T | C | T | 10 | 10 | AY.5 | 0.000206 |
noncoding | 193 | C193T | C | T | 10 | 10 | AY.50 | 0.007994 |
noncoding | 193 | C193T | C | T | 10 | 10 | AY.7.1 | 0.001127 |
noncoding | 193 | C193T | C | T | 10 | 10 | B.1.538 | 0.080645 |
noncoding | 193 | C193T | C | T | 8 | 8 | AY.61 | 0.000838 |
noncoding | 193 | C193T | C | T | 8 | 8 | B.1.1 | 0.000145 |
noncoding | 193 | C193T | C | T | 8 | 8 | B.1.177 | 0.000105 |
noncoding | 193 | C193T | C | T | 8 | 8 | B.1.234 | 0.001056 |
noncoding | 193 | C193T | C | T | 7 | 7 | AY.100 | 0.000322 |
noncoding | 193 | C193T | C | T | 7 | 7 | AY.3 | 0.00007 |
noncoding | 193 | C193T | C | T | 7 | 7 | AY.75 | 0.000392 |
noncoding | 193 | C193T | C | T | 7 | 7 | B.1.1.370 | 0.088608 |
noncoding | 193 | C193T | C | T | 6 | 6 | AY.47 | 0.000187 |
noncoding | 193 | C193T | C | T | 6 | 6 | B.1.526 | 0.000141 |
noncoding | 193 | C193T | C | T | 5 | 5 | AY.52 | 0.004072 |
noncoding | 193 | C193T | C | T | 5 | 5 | AY.75.1 | 0.000902 |
noncoding | 193 | C193T | C | T | 5 | 5 | B.1.243 | 0.000348 |
noncoding | 193 | C193T | C | T | 4 | 4 | AY.26 | 0.000113 |
noncoding | 193 | C193T | C | T | 4 | 4 | AY.98 | 0.000316 |
noncoding | 193 | C193T | C | T | 4 | 4 | B.1.1.372 | 0.002755 |
noncoding | 193 | C193T | C | T | 4 | 4 | B.1.429 | 0.000094 |
noncoding | 193 | C193T | C | T | 4 | 4 | B.1.609 | 0.001918 |
noncoding | 193 | C193T | C | T | 3 | 3 | B.1.1.163 | 0.022901 |
noncoding | 193 | C193T | C | T | 3 | 3 | B.1.596 | 0.000261 |
noncoding | 193 | C193T | C | T | 3 | 3 | B.40 | 0.001093 |
noncoding | 193 | C193T | C | T | 3 | 3 | D.2 | 0.000225 |
noncoding | 193 | C193T | C | T | 2 | 2 | AU.3 | 0.004219 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.117 | 0.000169 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.118 | 0.000125 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.119 | 0.000071 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.30 | 0.000791 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.36 | 0.000296 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.39 | 0.000049 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.53 | 0.000575 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.70 | 0.000417 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.93 | 0.000546 |
noncoding | 193 | C193T | C | T | 2 | 2 | AY.94 | 0.000885 |
noncoding | 193 | C193T | C | T | 2 | 2 | B.1.1.50 | 0.001358 |
noncoding | 193 | C193T | C | T | 2 | 2 | B.1.160.14 | 0.004237 |
noncoding | 193 | C193T | C | T | 2 | 2 | B.1.260 | 0.006689 |
noncoding | 193 | C193T | C | T | 2 | 2 | B.1.370 | 0.016 |
noncoding | 193 | C193T | C | T | 2 | 2 | B.1.628 | 0.000705 |
noncoding | 193 | C193T | C | T | 2 | 2 | C.37 | 0.000232 |
noncoding | 193 | C193T | C | T | 2 | 2 | P.1.14 | 0.000096 |
noncoding | 193 | C193T | C | T | 2 | 2 | P.1.9 | 0.009615 |
noncoding | 193 | C193T | C | T | 1 | 1 | A.21 | 0.00277 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.10 | 0.00053 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.109 | 0.00074 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.114 | 0.000231 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.120 | 0.000037 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.16.1 | 0.00047 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.24 | 0.000431 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.34.1 | 0.00051 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.35 | 0.000233 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.38 | 0.000499 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.39.1 | 0.00004 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.40 | 0.000964 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.42 | 0.00004 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.48 | 0.000465 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.5.3 | 0.000337 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.5.4 | 0.000277 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.51 | 0.000909 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.68 | 0.000274 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.69 | 0.000187 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.71 | 0.000475 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.77 | 0.001127 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.8 | 0.000606 |
noncoding | 193 | C193T | C | T | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.1.306 | 0.000438 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.1.311 | 0.000358 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.1.57 | 0.011494 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.126 | 0.001276 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.177.54 | 0.000606 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.177.7 | 0.000165 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.223 | 0.002778 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.438.1 | 0.000107 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.541 | 0.004425 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.1.634 | 0.003425 |
noncoding | 193 | C193T | C | T | 1 | 1 | B.4 | 0.002208 |
noncoding | 193 | C193T | C | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 193 | C193T | C | T | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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