CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 190

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding190C190TnoncodingCT143214321190-190
noncoding190C190-noncodingC-1941941190-190
noncoding190C190GnoncodingCG991190-190
noncoding190C190AnoncodingCA221190-190
noncoding190C190HnoncodingCH111190-190

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding190C190TCT14321432All0.000274
noncoding190C190TCT345345B.1.1.70.000309
noncoding190C190TCT322322B.1.10.005841
noncoding190C190-C-194194All0.000037
noncoding190C190TCT121121AY.40.000188
noncoding190C190TCT7171B.1.5950.018528
noncoding190C190TCT6565B.1.1.2140.003605
noncoding190C190TCT5454B.1.617.20.000203
noncoding190C190-C-4242B.1.1.70.000038
noncoding190C190TCT3333AY.30.000328
noncoding190C190TCT3333B.1.20.000291
noncoding190C190TCT2121AY.290.000331
noncoding190C190TCT2020B.10.000183
noncoding190C190TCT1616AY.250.000096
noncoding190C190-C-1616AY.40.000025
noncoding190C190TCT1616AY.9.10.00134
noncoding190C190TCT1515AY.200.000583
noncoding190C190TCT1515AY.430.000066
noncoding190C190TCT1515B.1.1.3480.011943
noncoding190C190TCT1313AY.1020.000345
noncoding190C190TCT1313AY.1030.000081
noncoding190C190TCT1313AY.720.017687
noncoding190C190TCT1212B.1.438.10.001287
noncoding190C190-C-1111AY.430.000049
noncoding190C190TCT1010AY.470.000311
noncoding190C190TCT1010P.10.000158
noncoding190C190GCG99All0.000002
noncoding190C190-C-99AY.230.000628
noncoding190C190TCT99B.1.1770.000119
noncoding190C190TCT88B.1.1.3060.003507
noncoding190C190-C-88B.1.1770.000105
noncoding190C190TCT77AY.440.000043
noncoding190C190TCT77B.1.1.2250.05036
noncoding190C190TCT77B.1.1.2690.009472
noncoding190C190TCT77B.1.1.5190.000278
noncoding190C190TCT77B.1.2210.000497
noncoding190C190TCT77B.1.6280.002467
noncoding190C190-C-66AY.30.00006
noncoding190C190TCT66B.1.258.170.000624
noncoding190C190-C-66B.1.617.20.000023
noncoding190C190TCT66Q.80.000989
noncoding190C190TCT55A.300.714286
noncoding190C190GCG55B.1.1.70.000004
noncoding190C190-C-55B.1.20.000044
noncoding190C190TCT55B.1.36.180.002101
noncoding190C190TCT44AY.1000.000184
noncoding190C190TCT44AY.260.000113
noncoding190C190-C-44AY.9.10.000335
noncoding190C190TCT44B.1.1.3170.001647
noncoding190C190-C-44B.1.1.330.001684
noncoding190C190-C-44B.1.1.3480.003185
noncoding190C190TCT44B.1.2430.000278
noncoding190C190TCT44B.1.5260.000094
noncoding190C190-C-33AY.200.000117
noncoding190C190-C-33AY.240.001293
noncoding190C190-C-33AY.250.000018
noncoding190C190-C-33AY.330.0002
noncoding190C190TCT33AY.610.000314
noncoding190C190TCT33AY.90.000203
noncoding190C190TCT33B.1.1.1330.025424
noncoding190C190TCT33B.1.1470.002268
noncoding190C190TCT33B.1.2580.0002
noncoding190C190TCT33B.1.4290.000071
noncoding190C190TCT33B.1.5090.002597
noncoding190C190TCT33B.60.00273
noncoding190C190TCT33B.6.60.002667
noncoding190C190TCT33P.1.150.000697
noncoding190C190ACA22All0
noncoding190C190-C-22AY.120.000632
noncoding190C190TCT22AY.1200.000074
noncoding190C190-C-22AY.34.10.00102
noncoding190C190TCT22AY.390.000049
noncoding190C190-C-22AY.4.20.000043
noncoding190C190TCT22AY.4.2.10.000298
noncoding190C190-C-22AY.4.40.000818
noncoding190C190TCT22AY.420.00008
noncoding190C190-C-22AY.450.000243
noncoding190C190TCT22AY.50.000041
noncoding190C190TCT22AY.540.000191
noncoding190C190TCT22AY.590.001059
noncoding190C190TCT22AY.9.20.000073
noncoding190C190GCG22AY.98.10.000097
noncoding190C190TCT22B.1.1.1610.007067
noncoding190C190TCT22B.1.1.1740.006757
noncoding190C190TCT22B.1.1600.000062
noncoding190C190TCT22B.1.177.600.000437
noncoding190C190TCT22B.1.360.000292
noncoding190C190TCT22B.1.5470.04878
noncoding190C190-C-22B.1.5960.000174
noncoding190C190-C-22N.60.014184
noncoding190C190-C-22P.10.000032
noncoding190C190-C-22P.1.140.000096
noncoding190C190-C-22P.20.000373
noncoding190C190-C-11A.10.000282
noncoding190C190TCT11A.230.010526
noncoding190C190-C-11AE.80.000489
noncoding190C190HCH11All0
noncoding190C190-C-11AY.1020.000027
noncoding190C190-C-11AY.1030.000006
noncoding190C190-C-11AY.1160.000287
noncoding190C190TCT11AY.1160.000287
noncoding190C190TCT11AY.1180.000063
noncoding190C190TCT11AY.120.000316
noncoding190C190TCT11AY.120.10.000321
noncoding190C190TCT11AY.160.00038
noncoding190C190TCT11AY.230.00007
noncoding190C190ACA11AY.230.00007
noncoding190C190TCT11AY.270.000065
noncoding190C190TCT11AY.29.10.000221
noncoding190C190TCT11AY.3.10.000085
noncoding190C190TCT11AY.360.000148
noncoding190C190-C-11AY.380.000499
noncoding190C190-C-11AY.390.000025
noncoding190C190TCT11AY.4.50.000107
noncoding190C190-C-11AY.4.50.000107
noncoding190C190-C-11AY.410.000294
noncoding190C190ACA11AY.430.000004
noncoding190C190-C-11AY.440.000006
noncoding190C190-C-11AY.460.000104
noncoding190C190-C-11AY.46.40.000165
noncoding190C190TCT11AY.520.000814
noncoding190C190-C-11AY.590.00053
noncoding190C190-C-11AY.60.000041
noncoding190C190-C-11AY.600.000938
noncoding190C190GCG11AY.630.000387
noncoding190C190-C-11AY.680.000274
noncoding190C190TCT11AY.75.10.00018
noncoding190C190-C-11AY.75.10.00018
noncoding190C190TCT11AY.850.000427
noncoding190C190-C-11AY.90.000068
noncoding190C190-C-11AY.940.000443
noncoding190C190-C-11AY.950.000761
noncoding190C190-C-11AY.98.10.000048
noncoding190C190GCG11B.10.000009
noncoding190C190-C-11B.10.000009
noncoding190C190TCT11B.1.1.100.001115
noncoding190C190-C-11B.1.1.1390.022727
noncoding190C190-C-11B.1.1.1700.001247
noncoding190C190TCT11B.1.1.1710.003676
noncoding190C190-C-11B.1.1.2320.001815
noncoding190C190-C-11B.1.1.2690.001353
noncoding190C190TCT11B.1.1.2770.000759
noncoding190C190TCT11B.1.1.280.000311
noncoding190C190TCT11B.1.1.3180.000302
noncoding190C190-C-11B.1.1.3220.008772
noncoding190C190TCT11B.1.1.3280.016949
noncoding190C190TCT11B.1.1.330.000421
noncoding190C190TCT11B.1.1.370.000193
noncoding190C190TCT11B.1.1.3740.002375
noncoding190C190TCT11B.1.1.390.00051
noncoding190C190-C-11B.1.1.4090.002833
noncoding190C190-C-11B.1.1.440.00241
noncoding190C190TCT11B.1.1.450.014085
noncoding190C190-C-11B.1.1600.000031
noncoding190C190-C-11B.1.160.230.004831
noncoding190C190-C-11B.1.177.180.00116
noncoding190C190TCT11B.1.177.180.00116
noncoding190C190-C-11B.1.177.210.000076
noncoding190C190-C-11B.1.177.40.000211
noncoding190C190-C-11B.1.177.620.001192
noncoding190C190HCH11B.1.20.000009
noncoding190C190TCT11B.1.2060.000816
noncoding190C190-C-11B.1.2430.00007
noncoding190C190-C-11B.1.2580.000067
noncoding190C190TCT11B.1.3510.00003
noncoding190C190-C-11B.1.360.000146
noncoding190C190TCT11B.1.3690.000285
noncoding190C190TCT11B.1.3930.028571
noncoding190C190TCT11B.1.4090.000781
noncoding190C190-C-11B.1.4160.001269
noncoding190C190-C-11B.1.4290.000024
noncoding190C190TCT11B.1.5300.007143
noncoding190C190TCT11B.1.5510.00129
noncoding190C190TCT11B.1.5670.003333
noncoding190C190-C-11B.1.5730.006098
noncoding190C190TCT11B.1.5960.000087
noncoding190C190TCT11B.1.6000.005848
noncoding190C190TCT11B.1.617.30.002985
noncoding190C190TCT11B.1.6210.000089
noncoding190C190-C-11B.100.008264
noncoding190C190TCT11B.40.002208
noncoding190C190-C-11C.350.000774
noncoding190C190-C-11D.20.000075
noncoding190C190-C-11N.40.004255
noncoding190C190-C-11Q.70.001111
noncoding190C190-C-11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.