CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
noncoding | 19 | C19T | noncoding | C | T | 4944 | 4944 | 1 | 19-19 | |
noncoding | 19 | C19G | noncoding | C | G | 1718 | 1718 | 1 | 19-19 | |
noncoding | 19 | C19A | noncoding | C | A | 847 | 847 | 1 | 19-19 | |
noncoding | 19 | C19- | noncoding | C | - | 363 | 363 | 1 | 19-19 | |
noncoding | 19 | C19V | noncoding | C | V | 18 | 18 | 1 | 19-19 | |
noncoding | 19 | C19R | noncoding | C | R | 6 | 6 | 1 | 19-19 | |
noncoding | 19 | C19B | noncoding | C | B | 3 | 3 | 1 | 19-19 | |
noncoding | 19 | C19K | noncoding | C | K | 1 | 1 | 1 | 19-19 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
noncoding | 19 | C19T | C | T | 4944 | 4944 | All | 0.000946 |
noncoding | 19 | C19T | C | T | 2916 | 2916 | B.1.1.7 | 0.00261 |
noncoding | 19 | C19G | C | G | 1718 | 1718 | All | 0.000329 |
noncoding | 19 | C19G | C | G | 1073 | 1073 | B.1.1.7 | 0.000961 |
noncoding | 19 | C19T | C | T | 1061 | 1061 | B.1.619.1 | 0.680564 |
noncoding | 19 | C19A | C | A | 847 | 847 | All | 0.000162 |
noncoding | 19 | C19- | C | - | 363 | 363 | All | 0.000069 |
noncoding | 19 | C19A | C | A | 285 | 285 | B.1.1.7 | 0.000255 |
noncoding | 19 | C19A | C | A | 220 | 220 | AY.43 | 0.000975 |
noncoding | 19 | C19- | C | - | 160 | 160 | B.1.1.7 | 0.000143 |
noncoding | 19 | C19T | C | T | 129 | 129 | Q.1 | 0.016296 |
noncoding | 19 | C19T | C | T | 112 | 112 | B.1.351 | 0.003329 |
noncoding | 19 | C19A | C | A | 91 | 91 | B.1 | 0.000834 |
noncoding | 19 | C19T | C | T | 59 | 59 | B.1.258.17 | 0.006134 |
noncoding | 19 | C19G | C | G | 58 | 58 | AY.43 | 0.000257 |
noncoding | 19 | C19T | C | T | 53 | 53 | B.1.177.60 | 0.011577 |
noncoding | 19 | C19T | C | T | 49 | 49 | B.1.1 | 0.000889 |
noncoding | 19 | C19A | C | A | 47 | 47 | AY.9.2 | 0.001726 |
noncoding | 19 | C19G | C | G | 46 | 46 | B.1.351 | 0.001367 |
noncoding | 19 | C19T | C | T | 43 | 43 | B.1.2 | 0.000379 |
noncoding | 19 | C19G | C | G | 43 | 43 | Q.1 | 0.005432 |
noncoding | 19 | C19G | C | G | 41 | 41 | B.1 | 0.000376 |
noncoding | 19 | C19A | C | A | 41 | 41 | B.1.617.2 | 0.000154 |
noncoding | 19 | C19G | C | G | 38 | 38 | B.1.2 | 0.000335 |
noncoding | 19 | C19T | C | T | 32 | 32 | P.1 | 0.000504 |
noncoding | 19 | C19T | C | T | 27 | 27 | B.1.258 | 0.001797 |
noncoding | 19 | C19T | C | T | 23 | 23 | B.1 | 0.000211 |
noncoding | 19 | C19A | C | A | 23 | 23 | Q.1 | 0.002906 |
noncoding | 19 | C19T | C | T | 22 | 22 | B.1.177 | 0.00029 |
noncoding | 19 | C19G | C | G | 22 | 22 | B.1.177.60 | 0.004806 |
noncoding | 19 | C19G | C | G | 21 | 21 | B.1.1 | 0.000381 |
noncoding | 19 | C19T | C | T | 21 | 21 | B.1.1.453 | 0.177966 |
noncoding | 19 | C19T | C | T | 21 | 21 | B.1.1.519 | 0.000834 |
noncoding | 19 | C19G | C | G | 21 | 21 | B.1.258.17 | 0.002183 |
noncoding | 19 | C19T | C | T | 20 | 20 | AY.43 | 0.000089 |
noncoding | 19 | C19V | C | V | 18 | 18 | All | 0.000003 |
noncoding | 19 | C19G | C | G | 18 | 18 | B.1.1.291 | 0.013363 |
noncoding | 19 | C19T | C | T | 18 | 18 | B.1.221 | 0.001279 |
noncoding | 19 | C19G | C | G | 17 | 17 | B.1.169 | 0.253731 |
noncoding | 19 | C19G | C | G | 17 | 17 | B.1.258 | 0.001131 |
noncoding | 19 | C19T | C | T | 17 | 17 | B.1.617.2 | 0.000064 |
noncoding | 19 | C19- | C | - | 16 | 16 | B.1.617.2 | 0.00006 |
noncoding | 19 | C19G | C | G | 15 | 15 | B.1.617.2 | 0.000056 |
noncoding | 19 | C19G | C | G | 14 | 14 | B.1.160 | 0.000437 |
noncoding | 19 | C19T | C | T | 14 | 14 | B.1.160 | 0.000437 |
noncoding | 19 | C19T | C | T | 13 | 13 | B.1.1.374 | 0.030879 |
noncoding | 19 | C19A | C | A | 13 | 13 | B.1.258.17 | 0.001352 |
noncoding | 19 | C19- | C | - | 12 | 12 | AY.30 | 0.004749 |
noncoding | 19 | C19A | C | A | 12 | 12 | B.1.2 | 0.000106 |
noncoding | 19 | C19T | C | T | 12 | 12 | U.3 | 0.046332 |
noncoding | 19 | C19- | C | - | 11 | 11 | B.1 | 0.000101 |
noncoding | 19 | C19G | C | G | 11 | 11 | B.1.177 | 0.000145 |
noncoding | 19 | C19T | C | T | 11 | 11 | B.1.177.81 | 0.002083 |
noncoding | 19 | C19G | C | G | 11 | 11 | B.1.221 | 0.000781 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.240 | 0.002156 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.333 | 0.105263 |
noncoding | 19 | C19T | C | T | 10 | 10 | B.1.429 | 0.000235 |
noncoding | 19 | C19G | C | G | 10 | 10 | B.1.446 | 0.2 |
noncoding | 19 | C19G | C | G | 9 | 9 | A.1 | 0.002537 |
noncoding | 19 | C19A | C | A | 9 | 9 | AY.98 | 0.000711 |
noncoding | 19 | C19- | C | - | 8 | 8 | B.1.1.306 | 0.003507 |
noncoding | 19 | C19- | C | - | 8 | 8 | B.1.210 | 0.017058 |
noncoding | 19 | C19T | C | T | 8 | 8 | B.1.619 | 0.006969 |
noncoding | 19 | C19- | C | - | 7 | 7 | AY.43 | 0.000031 |
noncoding | 19 | C19T | C | T | 7 | 7 | B.1.177.79 | 0.016393 |
noncoding | 19 | C19G | C | G | 7 | 7 | B.1.177.81 | 0.001325 |
noncoding | 19 | C19G | C | G | 7 | 7 | B.1.324 | 0.011236 |
noncoding | 19 | C19T | C | T | 7 | 7 | B.1.525 | 0.000792 |
noncoding | 19 | C19R | C | R | 6 | 6 | All | 0.000001 |
noncoding | 19 | C19- | C | - | 6 | 6 | B.1.1 | 0.000109 |
noncoding | 19 | C19A | C | A | 6 | 6 | B.1.1 | 0.000109 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.1.192 | 0.013857 |
noncoding | 19 | C19- | C | - | 6 | 6 | B.1.1.46 | 0.026201 |
noncoding | 19 | C19T | C | T | 6 | 6 | B.1.1.70 | 0.002046 |
noncoding | 19 | C19A | C | A | 6 | 6 | B.1.177 | 0.000079 |
noncoding | 19 | C19T | C | T | 6 | 6 | B.1.177.46 | 0.00551 |
noncoding | 19 | C19A | C | A | 6 | 6 | B.1.177.60 | 0.001311 |
noncoding | 19 | C19- | C | - | 6 | 6 | B.1.2 | 0.000053 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.243 | 0.000418 |
noncoding | 19 | C19A | C | A | 6 | 6 | B.1.351 | 0.000178 |
noncoding | 19 | C19G | C | G | 6 | 6 | B.1.371 | 0.006734 |
noncoding | 19 | C19- | C | - | 5 | 5 | AY.103 | 0.000031 |
noncoding | 19 | C19T | C | T | 5 | 5 | AY.25 | 0.00003 |
noncoding | 19 | C19G | C | G | 5 | 5 | AY.3 | 0.00005 |
noncoding | 19 | C19T | C | T | 5 | 5 | AY.4 | 0.000008 |
noncoding | 19 | C19G | C | G | 5 | 5 | AY.44 | 0.00003 |
noncoding | 19 | C19T | C | T | 5 | 5 | AY.68 | 0.001369 |
noncoding | 19 | C19T | C | T | 5 | 5 | AY.69 | 0.000933 |
noncoding | 19 | C19- | C | - | 5 | 5 | AY.85 | 0.002136 |
noncoding | 19 | C19V | C | V | 5 | 5 | B.1 | 0.000046 |
noncoding | 19 | C19T | C | T | 5 | 5 | B.1.177.86 | 0.000917 |
noncoding | 19 | C19- | C | - | 5 | 5 | B.1.258.17 | 0.00052 |
noncoding | 19 | C19T | C | T | 5 | 5 | B.1.427 | 0.000252 |
noncoding | 19 | C19G | C | G | 5 | 5 | B.1.427 | 0.000252 |
noncoding | 19 | C19T | C | T | 5 | 5 | B.1.620 | 0.00473 |
noncoding | 19 | C19G | C | G | 5 | 5 | P.1 | 0.000079 |
noncoding | 19 | C19T | C | T | 5 | 5 | P.1.14 | 0.000239 |
noncoding | 19 | C19T | C | T | 4 | 4 | 0.222222 | |
noncoding | 19 | C19T | C | T | 4 | 4 | AY.102 | 0.000106 |
noncoding | 19 | C19A | C | A | 4 | 4 | AY.30 | 0.001583 |
noncoding | 19 | C19T | C | T | 4 | 4 | AY.30 | 0.001583 |
noncoding | 19 | C19T | C | T | 4 | 4 | B.1.1.189 | 0.006051 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.1.251 | 0.031746 |
noncoding | 19 | C19- | C | - | 4 | 4 | B.1.1.27 | 0.022599 |
noncoding | 19 | C19T | C | T | 4 | 4 | B.1.1.28 | 0.001245 |
noncoding | 19 | C19- | C | - | 4 | 4 | B.1.1.33 | 0.001684 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.1.519 | 0.000159 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.139 | 0.002933 |
noncoding | 19 | C19- | C | - | 4 | 4 | B.1.177 | 0.000053 |
noncoding | 19 | C19V | C | V | 4 | 4 | B.1.2 | 0.000035 |
noncoding | 19 | C19A | C | A | 4 | 4 | B.1.258 | 0.000266 |
noncoding | 19 | C19T | C | T | 4 | 4 | B.1.36.18 | 0.001681 |
noncoding | 19 | C19G | C | G | 4 | 4 | B.1.621 | 0.000354 |
noncoding | 19 | C19T | C | T | 4 | 4 | C.36.3 | 0.002269 |
noncoding | 19 | C19T | C | T | 4 | 4 | P.1.1 | 0.001271 |
noncoding | 19 | C19T | C | T | 4 | 4 | P.2 | 0.000747 |
noncoding | 19 | C19- | C | - | 4 | 4 | Q.1 | 0.000505 |
noncoding | 19 | C19B | C | B | 3 | 3 | All | 0.000001 |
noncoding | 19 | C19T | C | T | 3 | 3 | AY.103 | 0.000019 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.25 | 0.000018 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.30 | 0.001187 |
noncoding | 19 | C19- | C | - | 3 | 3 | AY.4 | 0.000005 |
noncoding | 19 | C19T | C | T | 3 | 3 | AY.44 | 0.000018 |
noncoding | 19 | C19T | C | T | 3 | 3 | AY.5 | 0.000062 |
noncoding | 19 | C19G | C | G | 3 | 3 | AY.85 | 0.001282 |
noncoding | 19 | C19G | C | G | 3 | 3 | B | 0.000383 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.1 | 0.00098 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.1.141 | 0.006036 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 19 | C19- | C | - | 3 | 3 | B.1.1.28 | 0.000934 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.1.294 | 0.003797 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.317 | 0.001235 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.1.33 | 0.001263 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.1.52 | 0.036585 |
noncoding | 19 | C19A | C | A | 3 | 3 | B.1.1.70 | 0.001023 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.177.57 | 0.000843 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.177.82 | 0.001432 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.177.83 | 0.004444 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.177.86 | 0.00055 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.341 | 0.068182 |
noncoding | 19 | C19- | C | - | 3 | 3 | B.1.351 | 0.000089 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.36.16 | 0.004274 |
noncoding | 19 | C19T | C | T | 3 | 3 | B.1.526 | 0.000071 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.575 | 0.00091 |
noncoding | 19 | C19G | C | G | 3 | 3 | B.1.595 | 0.000783 |
noncoding | 19 | C19- | C | - | 3 | 3 | B.1.619.1 | 0.001924 |
noncoding | 19 | C19- | C | - | 3 | 3 | C.37 | 0.000348 |
noncoding | 19 | C19- | C | - | 3 | 3 | P.1 | 0.000047 |
noncoding | 19 | C19T | C | T | 3 | 3 | Q.4 | 0.001364 |
noncoding | 19 | C19T | C | T | 2 | 2 | A | 0.000774 |
noncoding | 19 | C19V | C | V | 2 | 2 | A.1 | 0.000564 |
noncoding | 19 | C19- | C | - | 2 | 2 | AU.2 | 0.004843 |
noncoding | 19 | C19G | C | G | 2 | 2 | AY.103 | 0.000012 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.120.1 | 0.000642 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.3 | 0.00002 |
noncoding | 19 | C19A | C | A | 2 | 2 | AY.3 | 0.00002 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.39 | 0.000049 |
noncoding | 19 | C19A | C | A | 2 | 2 | AY.39 | 0.000049 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.42 | 0.00008 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.47 | 0.000062 |
noncoding | 19 | C19A | C | A | 2 | 2 | AY.71 | 0.00095 |
noncoding | 19 | C19T | C | T | 2 | 2 | AY.79 | 0.002421 |
noncoding | 19 | C19A | C | A | 2 | 2 | AY.85 | 0.000854 |
noncoding | 19 | C19T | C | T | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 19 | C19- | C | - | 2 | 2 | AY.9.2 | 0.000073 |
noncoding | 19 | C19T | C | T | 2 | 2 | AY.98.1 | 0.000097 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.141 | 0.004024 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.243 | 0.008163 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.1.27 | 0.011299 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.284 | 0.000215 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.30 | 0.153846 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.306 | 0.000877 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.1.317 | 0.000823 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.318 | 0.000604 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.1.319 | 0.035088 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.1.354 | 0.008772 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.37 | 0.000386 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.1.374 | 0.004751 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.39 | 0.001019 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.397 | 0.004505 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.1.429 | 0.009217 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.1.46 | 0.008734 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.1.70 | 0.000682 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.110 | 0.00905 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.110.3 | 0.001437 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.126 | 0.002551 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.160 | 0.000062 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.177.16 | 0.001329 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.177.41 | 0.005 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.177.60 | 0.000437 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.177.62 | 0.002384 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.177.62 | 0.002384 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.177.73 | 0.001133 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.177.79 | 0.004684 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.177.86 | 0.000367 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.221 | 0.000142 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.234 | 0.000264 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.243 | 0.000139 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.258 | 0.000133 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.36.8 | 0.002 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.399 | 0.003868 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.427 | 0.000101 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.429 | 0.000047 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.525 | 0.000226 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.540 | 0.019417 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.565 | 0.001621 |
noncoding | 19 | C19G | C | G | 2 | 2 | B.1.594 | 0.0625 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.1.596 | 0.000174 |
noncoding | 19 | C19- | C | - | 2 | 2 | B.1.620 | 0.001892 |
noncoding | 19 | C19A | C | A | 2 | 2 | B.1.621 | 0.000177 |
noncoding | 19 | C19T | C | T | 2 | 2 | B.4 | 0.004415 |
noncoding | 19 | C19- | C | - | 2 | 2 | C.26 | 0.014706 |
noncoding | 19 | C19T | C | T | 2 | 2 | C.35 | 0.001548 |
noncoding | 19 | C19G | C | G | 2 | 2 | C.35 | 0.001548 |
noncoding | 19 | C19T | C | T | 2 | 2 | C.36 | 0.001821 |
noncoding | 19 | C19G | C | G | 2 | 2 | P.2 | 0.000373 |
noncoding | 19 | C19G | C | G | 2 | 2 | Q.4 | 0.00091 |
noncoding | 19 | C19A | C | A | 2 | 2 | Q.4 | 0.00091 |
noncoding | 19 | C19T | C | T | 2 | 2 | R.1 | 0.00018 |
noncoding | 19 | C19G | C | G | 2 | 2 | R.1 | 0.00018 |
noncoding | 19 | C19T | C | T | 2 | 2 | S.1 | 0.009901 |
noncoding | 19 | C19G | C | G | 2 | 2 | U.3 | 0.007722 |
noncoding | 19 | C19A | C | A | 2 | 2 | U.3 | 0.007722 |
noncoding | 19 | C19G | C | G | 1 | 1 | A | 0.000387 |
noncoding | 19 | C19T | C | T | 1 | 1 | A.27 | 0.001656 |
noncoding | 19 | C19T | C | T | 1 | 1 | AD.2 | 0.000219 |
noncoding | 19 | C19- | C | - | 1 | 1 | AE.2 | 0.058824 |
noncoding | 19 | C19- | C | - | 1 | 1 | AE.4 | 0.043478 |
noncoding | 19 | C19K | C | K | 1 | 1 | All | 0 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.1 | 0.000396 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.10 | 0.00053 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.102 | 0.000027 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.102 | 0.000027 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.103 | 0.000006 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.106 | 0.000335 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.106 | 0.000335 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.108 | 0.001103 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.111 | 0.000183 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.113 | 0.000142 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.113 | 0.000142 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.117 | 0.000085 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.117 | 0.000085 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.117 | 0.000085 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.117 | 0.000085 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.118 | 0.000063 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.20 | 0.000039 |
noncoding | 19 | C19R | C | R | 1 | 1 | AY.20 | 0.000039 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.20 | 0.000039 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.23 | 0.00007 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.26 | 0.000028 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.3 | 0.00001 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.3.1 | 0.000085 |
noncoding | 19 | C19K | C | K | 1 | 1 | AY.30 | 0.000396 |
noncoding | 19 | C19R | C | R | 1 | 1 | AY.30 | 0.000396 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.33 | 0.000067 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.34 | 0.000097 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.34 | 0.000097 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.34 | 0.000097 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.39 | 0.000025 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.4.2.1 | 0.000149 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.4.4 | 0.000409 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.4.5 | 0.000107 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.42 | 0.00004 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.44 | 0.000006 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.46 | 0.000104 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.54 | 0.000095 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.59 | 0.00053 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.59 | 0.00053 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.6 | 0.000041 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.7.2 | 0.000559 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.70 | 0.000209 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.71 | 0.000475 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.75 | 0.000056 |
noncoding | 19 | C19G | C | G | 1 | 1 | AY.75.1 | 0.00018 |
noncoding | 19 | C19A | C | A | 1 | 1 | AY.94 | 0.000443 |
noncoding | 19 | C19- | C | - | 1 | 1 | AY.98.1 | 0.000048 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.99 | 0.001049 |
noncoding | 19 | C19T | C | T | 1 | 1 | AY.99.2 | 0.000092 |
noncoding | 19 | C19G | C | G | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 19 | C19T | C | T | 1 | 1 | AZ.2 | 0.000821 |
noncoding | 19 | C19- | C | - | 1 | 1 | AZ.5 | 0.003509 |
noncoding | 19 | C19T | C | T | 1 | 1 | AZ.5 | 0.003509 |
noncoding | 19 | C19T | C | T | 1 | 1 | B | 0.000128 |
noncoding | 19 | C19A | C | A | 1 | 1 | B | 0.000128 |
noncoding | 19 | C19B | C | B | 1 | 1 | B.1 | 0.000009 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.139 | 0.022727 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.141 | 0.002012 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.153 | 0.001095 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.159 | 0.004673 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.162 | 0.029412 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.170 | 0.001247 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.187 | 0.00885 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.189 | 0.001513 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.192 | 0.002309 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.192 | 0.002309 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.202 | 0.076923 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.204 | 0.00304 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.1.216 | 0.00089 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.218 | 0.007692 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.219 | 0.005 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.219 | 0.005 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.222 | 0.000204 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.228 | 0.003049 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.231 | 0.003096 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.232 | 0.001815 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.234 | 0.012048 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.243 | 0.004082 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.26 | 0.005236 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.28 | 0.000311 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.282 | 0.011628 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.291 | 0.000742 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.301 | 0.001179 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.318 | 0.000302 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.319 | 0.017544 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.326 | 0.001761 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.33 | 0.000421 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.39 | 0.00051 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.1.397 | 0.002252 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.432 | 0.001266 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.46 | 0.004367 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.464 | 0.001473 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.486 | 0.001577 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.50 | 0.000679 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.523 | 0.001563 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.528 | 0.004808 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.1.58 | 0.005376 |
noncoding | 19 | C19R | C | R | 1 | 1 | B.1.1.7 | 0.000001 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.1.8 | 0.003584 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.1.98 | 0.018519 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.111 | 0.001175 |
noncoding | 19 | C19R | C | R | 1 | 1 | B.1.128 | 0.000635 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.149 | 0.003425 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.160.16 | 0.000929 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.170 | 0.00431 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.177.15 | 0.000631 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.177.21 | 0.000076 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.177.35 | 0.000691 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.41 | 0.0025 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.177.51 | 0.004566 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.177.53 | 0.002392 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.75 | 0.001041 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.177.77 | 0.000726 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.177.81 | 0.000189 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.177.82 | 0.000477 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.206 | 0.000816 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.214.2 | 0.0006 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.221.4 | 0.004167 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.234 | 0.000132 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.240 | 0.000216 |
noncoding | 19 | C19B | C | B | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.243 | 0.00007 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.258.14 | 0.00098 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.258.3 | 0.001675 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.298 | 0.002114 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.301 | 0.005917 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.306 | 0.005714 |
noncoding | 19 | C19R | C | R | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.311 | 0.000275 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.320 | 0.001245 |
noncoding | 19 | C19R | C | R | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.324 | 0.001605 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.349 | 0.000715 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.351.2 | 0.000303 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.36 | 0.000146 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36.1 | 0.00114 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.36.16 | 0.001425 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.36.19 | 0.009259 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.36.31 | 0.001751 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.36.35 | 0.002604 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.36.8 | 0.001 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.367 | 0.000792 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.369 | 0.000285 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.371 | 0.001122 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.371 | 0.001122 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.396 | 0.000706 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.400 | 0.000429 |
noncoding | 19 | C19V | C | V | 1 | 1 | B.1.402 | 0.009804 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.409 | 0.000781 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.416 | 0.001269 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.426 | 0.001009 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 19 | C19B | C | B | 1 | 1 | B.1.427 | 0.00005 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.429 | 0.000024 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.446 | 0.02 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.466.2 | 0.000391 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.493 | 0.025641 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.497 | 0.000315 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.500 | 0.052632 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.509 | 0.000866 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.517 | 0.000427 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.524 | 0.001406 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.525 | 0.000113 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.526 | 0.000024 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.527 | 0.003704 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.544 | 0.006024 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.561 | 0.000397 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.565 | 0.00081 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.568 | 0.001111 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.576 | 0.000907 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.577 | 0.000687 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.595 | 0.000261 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.596 | 0.000087 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.617.1 | 0.000129 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.618 | 0.004032 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.619 | 0.000871 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.621 | 0.000089 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.1.623 | 0.000536 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.1.636 | 0.006711 |
noncoding | 19 | C19A | C | A | 1 | 1 | B.1.637 | 0.000073 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.1.9.4 | 0.006135 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.4 | 0.002208 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.4.4 | 0.018868 |
noncoding | 19 | C19G | C | G | 1 | 1 | B.4.4 | 0.018868 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.4.8 | 0.071429 |
noncoding | 19 | C19- | C | - | 1 | 1 | B.6 | 0.00091 |
noncoding | 19 | C19T | C | T | 1 | 1 | B.6.6 | 0.000889 |
noncoding | 19 | C19A | C | A | 1 | 1 | C.26 | 0.007353 |
noncoding | 19 | C19G | C | G | 1 | 1 | C.36 | 0.000911 |
noncoding | 19 | C19G | C | G | 1 | 1 | C.36.3 | 0.000567 |
noncoding | 19 | C19T | C | T | 1 | 1 | C.37 | 0.000116 |
noncoding | 19 | C19A | C | A | 1 | 1 | D.2 | 0.000075 |
noncoding | 19 | C19G | C | G | 1 | 1 | N.1 | 0.016949 |
noncoding | 19 | C19T | C | T | 1 | 1 | N.9 | 0.005952 |
noncoding | 19 | C19A | C | A | 1 | 1 | P.1 | 0.000016 |
noncoding | 19 | C19- | C | - | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 19 | C19A | C | A | 1 | 1 | P.1.1 | 0.000318 |
noncoding | 19 | C19T | C | T | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 19 | C19- | C | - | 1 | 1 | P.1.12 | 0.000484 |
noncoding | 19 | C19G | C | G | 1 | 1 | P.1.14 | 0.000048 |
noncoding | 19 | C19T | C | T | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 19 | C19G | C | G | 1 | 1 | P.1.17 | 0.000162 |
noncoding | 19 | C19- | C | - | 1 | 1 | P.2 | 0.000187 |
noncoding | 19 | C19A | C | A | 1 | 1 | P.2 | 0.000187 |
noncoding | 19 | C19- | C | - | 1 | 1 | Q.4 | 0.000455 |
noncoding | 19 | C19- | C | - | 1 | 1 | U.3 | 0.003861 |
noncoding | 19 | C19T | C | T | 1 | 1 | Z.1 | 0.00289 |
noncoding | 19 | C19A | C | A | 1 | 1 | Z.1 | 0.00289 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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