CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 189

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding189G189AnoncodingGA367736771189-189
noncoding189G189TnoncodingGT3653651189-189
noncoding189G189-noncodingG-1951951189-189
noncoding189G189CnoncodingGC551189-189

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding189G189AGA36773677All0.000703
noncoding189G189AGA32953295B.1.1.70.00295
noncoding189G189TGT365365All0.00007
noncoding189G189-G-195195All0.000037
noncoding189G189TGT6969AY.40.000107
noncoding189G189AGA5656AY.440.000341
noncoding189G189-G-4242B.1.1.70.000038
noncoding189G189TGT4040B.1.1.70.000036
noncoding189G189TGT3838AY.250.000229
noncoding189G189AGA3737AY.40.000058
noncoding189G189AGA3333B.1.1.4080.916667
noncoding189G189TGT1919AY.330.001269
noncoding189G189AGA1717B.1.2220.028765
noncoding189G189AGA1717P.20.003173
noncoding189G189-G-1616AY.40.000025
noncoding189G189AGA1616B.1.1770.000211
noncoding189G189AGA1616B.1.5260.000376
noncoding189G189TGT1616B.1.617.20.00006
noncoding189G189TGT1414AY.440.000085
noncoding189G189AGA1414B.1.617.20.000053
noncoding189G189AGA1212AY.1030.000075
noncoding189G189AGA1212AY.30.000119
noncoding189G189-G-1111AY.430.000049
noncoding189G189TGT1111B.1.1.5190.000437
noncoding189G189TGT1010B.1.10.000181
noncoding189G189-G-99AY.230.000628
noncoding189G189TGT99AY.260.000255
noncoding189G189AGA99B.1.160.160.008364
noncoding189G189TGT99P.20.00168
noncoding189G189AGA88B.1.10.000145
noncoding189G189-G-88B.1.1770.000105
noncoding189G189TGT77AY.1030.000043
noncoding189G189AGA77B.1.177.350.004838
noncoding189G189TGT77C.260.051471
noncoding189G189AGA77P.1.70.002235
noncoding189G189-G-66AY.30.00006
noncoding189G189AGA66AY.430.000027
noncoding189G189AGA66AY.470.000187
noncoding189G189AGA66B.10.000055
noncoding189G189TGT66B.1.20.000053
noncoding189G189AGA66B.1.2580.000399
noncoding189G189CGC55All0.000001
noncoding189G189TGT55AY.1200.000186
noncoding189G189TGT55AY.430.000022
noncoding189G189TGT55B.1.1.330.002104
noncoding189G189-G-55B.1.20.000044
noncoding189G189-G-55B.1.617.20.000019
noncoding189G189TGT44AY.1020.000106
noncoding189G189AGA44AY.1020.000106
noncoding189G189TGT44AY.130.000644
noncoding189G189AGA44AY.200.000155
noncoding189G189TGT44AY.30.00004
noncoding189G189AGA44AY.390.000099
noncoding189G189AGA44AY.4.20.000087
noncoding189G189AGA44AY.420.000161
noncoding189G189TGT44AY.50.000083
noncoding189G189-G-44AY.9.10.000335
noncoding189G189TGT44B.10.000037
noncoding189G189-G-44B.1.1.330.001684
noncoding189G189-G-44B.1.1.3480.003185
noncoding189G189AGA44B.1.177.420.003578
noncoding189G189TGT44B.1.3510.000119
noncoding189G189TGT44B.1.360.000584
noncoding189G189AGA44B.1.4290.000094
noncoding189G189TGT44B.1.5170.001708
noncoding189G189AGA44B.1.6210.000354
noncoding189G189AGA44Q.80.00066
noncoding189G189-G-33AY.200.000117
noncoding189G189AGA33AY.230.000209
noncoding189G189-G-33AY.240.001293
noncoding189G189AGA33AY.250.000018
noncoding189G189-G-33AY.250.000018
noncoding189G189-G-33AY.330.0002
noncoding189G189TGT33AY.4.20.000065
noncoding189G189-G-33B.10.000027
noncoding189G189TGT33B.1.1770.00004
noncoding189G189AGA33B.1.177.210.000229
noncoding189G189TGT33P.10.000047
noncoding189G189AGA33P.10.000047
noncoding189G189AGA22A.23.10.001408
noncoding189G189TGT22AY.1130.000285
noncoding189G189TGT22AY.1170.000169
noncoding189G189AGA22AY.1180.000125
noncoding189G189-G-22AY.120.000632
noncoding189G189TGT22AY.160.000759
noncoding189G189-G-22AY.34.10.00102
noncoding189G189AGA22AY.360.000296
noncoding189G189TGT22AY.390.000049
noncoding189G189AGA22AY.39.10.000079
noncoding189G189-G-22AY.4.20.000043
noncoding189G189-G-22AY.4.40.000818
noncoding189G189-G-22AY.450.000243
noncoding189G189TGT22AY.60.000082
noncoding189G189AGA22AY.690.000373
noncoding189G189CGC22B.10.000018
noncoding189G189TGT22B.1.1.3100.030303
noncoding189G189TGT22B.1.1.4200.002012
noncoding189G189AGA22B.1.1.440.004819
noncoding189G189AGA22B.1.1490.006849
noncoding189G189TGT22B.1.177.40.000422
noncoding189G189AGA22B.1.4270.000101
noncoding189G189TGT22B.1.4290.000047
noncoding189G189-G-22B.1.5960.000174
noncoding189G189TGT22B.1.617.10.000258
noncoding189G189TGT22C.370.000232
noncoding189G189-G-22N.60.014184
noncoding189G189-G-22P.10.000032
noncoding189G189-G-22P.1.140.000096
noncoding189G189-G-22P.20.000373
noncoding189G189-G-11A.10.000282
noncoding189G189-G-11AE.80.000489
noncoding189G189AGA11AE.80.000489
noncoding189G189TGT11AT.10.005128
noncoding189G189TGT11AY.10.000396
noncoding189G189TGT11AY.1000.000046
noncoding189G189-G-11AY.1020.000027
noncoding189G189-G-11AY.1030.000006
noncoding189G189AGA11AY.1060.000335
noncoding189G189TGT11AY.1100.000113
noncoding189G189AGA11AY.1100.000113
noncoding189G189-G-11AY.1160.000287
noncoding189G189AGA11AY.1170.000085
noncoding189G189TGT11AY.1180.000063
noncoding189G189TGT11AY.200.000039
noncoding189G189AGA11AY.260.000028
noncoding189G189AGA11AY.290.000016
noncoding189G189AGA11AY.3.10.000085
noncoding189G189TGT11AY.340.000097
noncoding189G189-G-11AY.380.000499
noncoding189G189-G-11AY.390.000025
noncoding189G189TGT11AY.4.50.000107
noncoding189G189-G-11AY.4.50.000107
noncoding189G189-G-11AY.410.000294
noncoding189G189TGT11AY.420.00004
noncoding189G189CGC11AY.430.000004
noncoding189G189-G-11AY.440.000006
noncoding189G189AGA11AY.450.000122
noncoding189G189-G-11AY.460.000104
noncoding189G189-G-11AY.46.40.000165
noncoding189G189AGA11AY.50.000021
noncoding189G189-G-11AY.590.00053
noncoding189G189-G-11AY.60.000041
noncoding189G189-G-11AY.600.000938
noncoding189G189-G-11AY.680.000274
noncoding189G189TGT11AY.7.10.000113
noncoding189G189-G-11AY.75.10.00018
noncoding189G189AGA11AY.75.10.00018
noncoding189G189-G-11AY.90.000068
noncoding189G189TGT11AY.9.20.000037
noncoding189G189TGT11AY.910.00073
noncoding189G189-G-11AY.940.000443
noncoding189G189-G-11AY.950.000761
noncoding189G189TGT11AY.98.10.000048
noncoding189G189-G-11AY.98.10.000048
noncoding189G189AGA11B0.000128
noncoding189G189AGA11B.1.1.120.007463
noncoding189G189-G-11B.1.1.1390.022727
noncoding189G189TGT11B.1.1.1590.004673
noncoding189G189-G-11B.1.1.1700.001247
noncoding189G189AGA11B.1.1.2070.001182
noncoding189G189AGA11B.1.1.2190.005
noncoding189G189AGA11B.1.1.2220.000204
noncoding189G189-G-11B.1.1.2320.001815
noncoding189G189AGA11B.1.1.250.000569
noncoding189G189-G-11B.1.1.2690.001353
noncoding189G189TGT11B.1.1.280.000311
noncoding189G189AGA11B.1.1.3170.000412
noncoding189G189TGT11B.1.1.3170.000412
noncoding189G189-G-11B.1.1.3220.008772
noncoding189G189TGT11B.1.1.3290.003846
noncoding189G189TGT11B.1.1.3790.03125
noncoding189G189-G-11B.1.1.4090.002833
noncoding189G189-G-11B.1.1.440.00241
noncoding189G189TGT11B.1.1.500.000679
noncoding189G189AGA11B.1.1.5070.008696
noncoding189G189AGA11B.1.1.5230.001563
noncoding189G189TGT11B.1.1570.002985
noncoding189G189-G-11B.1.1600.000031
noncoding189G189-G-11B.1.160.230.004831
noncoding189G189TGT11B.1.177.120.000152
noncoding189G189-G-11B.1.177.180.00116
noncoding189G189-G-11B.1.177.210.000076
noncoding189G189-G-11B.1.177.40.000211
noncoding189G189TGT11B.1.177.550.002331
noncoding189G189-G-11B.1.177.620.001192
noncoding189G189AGA11B.1.177.750.001041
noncoding189G189AGA11B.1.177.80.000752
noncoding189G189AGA11B.1.177.870.000728
noncoding189G189AGA11B.1.20.000009
noncoding189G189TGT11B.1.2060.000816
noncoding189G189AGA11B.1.2320.000537
noncoding189G189TGT11B.1.2370.004975
noncoding189G189-G-11B.1.2430.00007
noncoding189G189TGT11B.1.2580.000067
noncoding189G189-G-11B.1.2580.000067
noncoding189G189AGA11B.1.258.110.000396
noncoding189G189AGA11B.1.2650.001271
noncoding189G189AGA11B.1.3510.00003
noncoding189G189-G-11B.1.360.000146
noncoding189G189AGA11B.1.360.000146
noncoding189G189-G-11B.1.4160.001269
noncoding189G189-G-11B.1.4290.000024
noncoding189G189CGC11B.1.466.20.000391
noncoding189G189TGT11B.1.5250.000113
noncoding189G189TGT11B.1.5260.000024
noncoding189G189-G-11B.1.5730.006098
noncoding189G189TGT11B.1.6210.000089
noncoding189G189AGA11B.1.6230.000536
noncoding189G189AGA11B.1.6280.000352
noncoding189G189TGT11B.1.910.002075
noncoding189G189-G-11B.100.008264
noncoding189G189TGT11B.40.002208
noncoding189G189CGC11B.40.002208
noncoding189G189-G-11C.350.000774
noncoding189G189-G-11D.20.000075
noncoding189G189TGT11D.20.000075
noncoding189G189-G-11N.40.004255
noncoding189G189AGA11N.50.001767
noncoding189G189TGT11P.1.150.000232
noncoding189G189AGA11P.1.150.000232
noncoding189G189AGA11P.1.160.000374
noncoding189G189-G-11Q.70.001111
noncoding189G189-G-11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.