CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 181

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding181T181CnoncodingTC1911911181-181
noncoding181T181-noncodingT-1381381181-181
noncoding181T181GnoncodingTG72721181-181
noncoding181T181AnoncodingTA68681181-181

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding181T181CTC191191All0.000037
noncoding181T181-T-138138All0.000026
noncoding181T181GTG7272All0.000014
noncoding181T181ATA6868All0.000013
noncoding181T181CTC4646B.1.4600.821429
noncoding181T181-T-3333B.1.1.70.00003
noncoding181T181ATA3030AY.30.000298
noncoding181T181CTC2828B.10.000256
noncoding181T181GTG1919A.10.005355
noncoding181T181ATA1414AY.440.000085
noncoding181T181GTG1313B.1.617.20.000049
noncoding181T181GTG1212AY.200.000466
noncoding181T181CTC1212AY.90.000811
noncoding181T181CTC1111AY.98.10.000533
noncoding181T181-T-99AY.230.000628
noncoding181T181CTC99B.1.1.70.000008
noncoding181T181-T-77AY.430.000031
noncoding181T181CTC66AY.30.00006
noncoding181T181-T-66AY.40.000009
noncoding181T181GTG66B.1.1.70.000005
noncoding181T181-T-66B.1.1770.000079
noncoding181T181CTC66B.1.20.000053
noncoding181T181CTC66B.1.4660.139535
noncoding181T181CTC55AY.1030.000031
noncoding181T181CTC55AY.290.000079
noncoding181T181GTG55AY.40.000008
noncoding181T181CTC55B.1.177.470.064935
noncoding181T181CTC55P.10.000079
noncoding181T181CTC44AY.40.000006
noncoding181T181CTC44AY.430.000018
noncoding181T181GTG44AY.570.002625
noncoding181T181-T-44B.1.10.000073
noncoding181T181-T-44B.1.1.330.001684
noncoding181T181-T-44B.1.1.3480.003185
noncoding181T181ATA44B.1.1.70.000004
noncoding181T181CTC44B.1.2210.000284
noncoding181T181CTC44B.1.617.20.000015
noncoding181T181CTC33AY.840.001312
noncoding181T181-T-33B.10.000027
noncoding181T181-T-33C.10.007177
noncoding181T181-T-22AY.120.000632
noncoding181T181GTG22AY.30.00002
noncoding181T181-T-22AY.330.000134
noncoding181T181CTC22AY.330.000134
noncoding181T181-T-22AY.34.10.00102
noncoding181T181ATA22AY.40.000003
noncoding181T181-T-22AY.4.40.000818
noncoding181T181CTC22AY.440.000012
noncoding181T181-T-22AY.60.000082
noncoding181T181-T-22B.1.1600.000062
noncoding181T181-T-22B.1.20.000018
noncoding181T181CTC22B.1.5750.000607
noncoding181T181-T-22B.1.617.20.000008
noncoding181T181-T-22N.60.014184
noncoding181T181CTC22P.1.170.000324
noncoding181T181-T-22P.20.000373
noncoding181T181CTC22Q.10.000253
noncoding181T181-T-11A.10.000282
noncoding181T181ATA11A.10.000282
noncoding181T181-T-11A.23.10.000704
noncoding181T181ATA11A.250.018182
noncoding181T181ATA11AY.1050.000643
noncoding181T181-T-11AY.1160.000287
noncoding181T181ATA11AY.1190.000035
noncoding181T181CTC11AY.1190.000035
noncoding181T181GTG11AY.130.000161
noncoding181T181ATA11AY.200.000039
noncoding181T181ATA11AY.230.00007
noncoding181T181ATA11AY.260.000028
noncoding181T181CTC11AY.260.000028
noncoding181T181-T-11AY.30.00001
noncoding181T181-T-11AY.380.000499
noncoding181T181CTC11AY.390.000025
noncoding181T181CTC11AY.4.50.000107
noncoding181T181-T-11AY.4.50.000107
noncoding181T181-T-11AY.410.000294
noncoding181T181GTG11AY.420.00004
noncoding181T181ATA11AY.430.000004
noncoding181T181GTG11AY.440.000006
noncoding181T181-T-11AY.450.000122
noncoding181T181CTC11AY.460.000104
noncoding181T181-T-11AY.460.000104
noncoding181T181-T-11AY.46.60.000072
noncoding181T181CTC11AY.50.000021
noncoding181T181CTC11AY.540.000095
noncoding181T181ATA11AY.570.000656
noncoding181T181-T-11AY.600.000938
noncoding181T181GTG11AY.610.000105
noncoding181T181ATA11AY.620.000436
noncoding181T181-T-11AY.680.000274
noncoding181T181GTG11AY.740.000116
noncoding181T181GTG11AY.750.000056
noncoding181T181-T-11AY.75.10.00018
noncoding181T181CTC11AY.790.001211
noncoding181T181ATA11AY.840.000437
noncoding181T181-T-11AY.90.000068
noncoding181T181-T-11AY.9.10.000084
noncoding181T181-T-11AY.940.000443
noncoding181T181-T-11AY.950.000761
noncoding181T181-T-11AY.98.10.000048
noncoding181T181CTC11AY.99.20.000092
noncoding181T181ATA11B.10.000009
noncoding181T181CTC11B.1.10.000018
noncoding181T181-T-11B.1.1.1390.022727
noncoding181T181-T-11B.1.1.1660.033333
noncoding181T181-T-11B.1.1.2320.001815
noncoding181T181CTC11B.1.1.2940.001266
noncoding181T181GTG11B.1.1.3060.000438
noncoding181T181-T-11B.1.1.3220.008772
noncoding181T181-T-11B.1.1.370.000193
noncoding181T181-T-11B.1.1.4090.002833
noncoding181T181-T-11B.1.1.4480.002033
noncoding181T181ATA11B.1.1.4650.015625
noncoding181T181-T-11B.1.1.990.02381
noncoding181T181-T-11B.1.160.230.004831
noncoding181T181ATA11B.1.1770.000013
noncoding181T181CTC11B.1.1770.000013
noncoding181T181-T-11B.1.177.180.00116
noncoding181T181-T-11B.1.177.210.000076
noncoding181T181CTC11B.1.177.250.014925
noncoding181T181-T-11B.1.177.40.000211
noncoding181T181-T-11B.1.177.540.000606
noncoding181T181CTC11B.1.177.750.001041
noncoding181T181ATA11B.1.20.000009
noncoding181T181GTG11B.1.20.000009
noncoding181T181-T-11B.1.2580.000067
noncoding181T181ATA11B.1.3510.00003
noncoding181T181-T-11B.1.360.000146
noncoding181T181CTC11B.1.360.000146
noncoding181T181GTG11B.1.3910.001127
noncoding181T181-T-11B.1.4160.001269
noncoding181T181-T-11B.1.4290.000024
noncoding181T181CTC11B.1.5250.000113
noncoding181T181GTG11B.1.5260.000024
noncoding181T181-T-11B.1.5800.004065
noncoding181T181-T-11B.1.5950.000261
noncoding181T181CTC11B.1.5990.00365
noncoding181T181ATA11B.1.617.20.000004
noncoding181T181CTC11B.1.617.30.002985
noncoding181T181GTG11B.1.88.10.004808
noncoding181T181-T-11C.350.000774
noncoding181T181ATA11D.20.000075
noncoding181T181-T-11N.40.004255

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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