CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 174 & Codon = T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding174G174TnoncodingGT52671526711174-174

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding174G174TGT5267152671All0.010074
noncoding174G174TGT3203332033B.1.3510.952229
noncoding174G174TGT59195919B.1.1.70.005299
noncoding174G174TGT32223222B.1.351.20.974887
noncoding174G174TGT19711971AY.120.2.10.982063
noncoding174G174TGT16571657B.1.351.50.993405
noncoding174G174TGT10651065B.1.351.30.933392
noncoding174G174TGT799799B.1.258.110.316686
noncoding174G174TGT421421AY.120.20.541131
noncoding174G174TGT394394AY.40.000613
noncoding174G174TGT389389B.1.1.2840.041779
noncoding174G174TGT348348B.10.003188
noncoding174G174TGT259259B.1.617.20.000975
noncoding174G174TGT254254B.1.36.350.661458
noncoding174G174TGT236236B.1.5950.061587
noncoding174G174TGT233233B.1.20.002052
noncoding174G174TGT226226AY.440.001376
noncoding174G174TGT205205B.1.362.20.966981
noncoding174G174TGT202202AY.1030.001254
noncoding174G174TGT152152AY.340.014739
noncoding174G174TGT150150AY.250.000902
noncoding174G174TGT143143AY.430.000634
noncoding174G174TGT122122P.10.001922
noncoding174G174TGT119119B.1.258.170.012373
noncoding174G174TGT103103AY.98.10.004988
noncoding174G174TGT9797AY.9.10.008121
noncoding174G174TGT9393AY.30.000925
noncoding174G174TGT8686AY.390.002125
noncoding174G174TGT8282B.1.10.001488
noncoding174G174TGT7373B.1.1770.000961
noncoding174G174TGT6969B.1.5260.001622
noncoding174G174TGT6161AY.1020.001617
noncoding174G174TGT5353AY.1000.002438
noncoding174G174TGT4242AY.1200.001562
noncoding174G174TGT4141B.1.1400.773585
noncoding174G174TGT3939AY.260.001104
noncoding174G174TGT3434B.1.517.10.178947
noncoding174G174TGT3434Q.80.005607
noncoding174G174TGT3131B.1.177.750.032258
noncoding174G174TGT2626B.1.2580.00173
noncoding174G174TGT2626B.1.351.11
noncoding174G174TGT2626B.1.3690.007416
noncoding174G174TGT2424B.1.2370.119403
noncoding174G174TGT2424B.1.36.360.014449
noncoding174G174TGT2424B.1.5240.033755
noncoding174G174TGT2323B.1.4210.171642
noncoding174G174TGT2222AY.4.2.10.003278
noncoding174G174TGT2222B.1.1600.000686
noncoding174G174TGT2121AY.290.000331
noncoding174G174TGT2020AY.200.000777
noncoding174G174TGT2020AY.4.20.000434
noncoding174G174TGT1919AY.1210.002571
noncoding174G174TGT1919B0.002428
noncoding174G174TGT1717B.1.360.00248
noncoding174G174TGT1717P.1.140.000813
noncoding174G174TGT1717P.1.150.00395
noncoding174G174TGT1616B.1.177.350.011057
noncoding174G174TGT1616B.1.5250.001811
noncoding174G174TGT1616B.1.6200.015137
noncoding174G174TGT1515AY.470.000467
noncoding174G174TGT1515B.1.5540.066079
noncoding174G174TGT1515P.1.10.004765
noncoding174G174TGT1313AY.3.10.001108
noncoding174G174TGT1313AY.50.000268
noncoding174G174TGT1313AY.9.20.000477
noncoding174G174TGT1313AY.980.001027
noncoding174G174TGT1313B.1.1.5190.000516
noncoding174G174TGT1313B.1.2430.000905
noncoding174G174TGT1313B.1.4990.013655
noncoding174G174TGT1313Q.10.001642
noncoding174G174TGT1212AY.1130.001709
noncoding174G174TGT1212B.1.177.420.010733
noncoding174G174TGT1212B.1.177.730.006795
noncoding174G174TGT1111AY.610.001153
noncoding174G174TGT1111AY.75.10.001983
noncoding174G174TGT1111B.1.177.600.002403
noncoding174G174TGT1111B.1.6210.000974
noncoding174G174TGT1010AY.360.001482
noncoding174G174TGT1010P.20.001866
noncoding174G174TGT1010R.10.0009
noncoding174G174TGT99AY.1170.000761
noncoding174G174TGT99AY.140.000792
noncoding174G174TGT99AY.16.10.004229
noncoding174G174TGT99AY.330.000601
noncoding174G174TGT99AY.450.001095
noncoding174G174TGT99B.1.1700.038793
noncoding174G174TGT99B.1.6370.000658
noncoding174G174TGT88AY.1160.002294
noncoding174G174TGT88AY.420.000322
noncoding174G174TGT77B.1.1.2280.021341
noncoding174G174TGT77B.1.4290.000165
noncoding174G174TGT66AY.230.000418
noncoding174G174TGT66AY.39.10.000238
noncoding174G174TGT66AY.46.60.000433
noncoding174G174TGT66AY.750.000336
noncoding174G174TGT66B.1.1.4170.016216
noncoding174G174TGT66C.370.000696
noncoding174G174TGT66P.1.120.002904
noncoding174G174TGT55AY.1190.000177
noncoding174G174TGT55AY.270.000324
noncoding174G174TGT55AY.460.00052
noncoding174G174TGT55AY.540.000477
noncoding174G174TGT55AY.710.002375
noncoding174G174TGT55AY.990.005247
noncoding174G174TGT55B.1.1.2140.000277
noncoding174G174TGT55B.1.1.2410.010352
noncoding174G174TGT55B.1.1.3050.019305
noncoding174G174TGT55B.1.1.500.003394
noncoding174G174TGT55B.1.177.820.002387
noncoding174G174TGT55B.1.177.860.000917
noncoding174G174TGT55B.1.4700.007022
noncoding174G174TGT55B.1.5960.000436
noncoding174G174TGT44AY.1060.00134
noncoding174G174TGT44AY.1080.00441
noncoding174G174TGT44AY.46.50.000794
noncoding174G174TGT44AY.650.002132
noncoding174G174TGT44AY.7.20.002237
noncoding174G174TGT44AY.940.001771
noncoding174G174TGT44B.1.1.1270.25
noncoding174G174TGT44B.1.1.2210.040404
noncoding174G174TGT44B.1.1.2220.000816
noncoding174G174TGT44B.1.1.280.001245
noncoding174G174TGT44B.1.1.3180.001207
noncoding174G174TGT44B.1.1.3820.142857
noncoding174G174TGT44B.1.177.170.003284
noncoding174G174TGT44B.1.2210.000284
noncoding174G174TGT44B.1.258.240.043011
noncoding174G174TGT44B.1.6090.001918
noncoding174G174TGT44B.1.617.10.000516
noncoding174G174TGT44B.1.6280.001409
noncoding174G174TGT44P.50.054795
noncoding174G174TGT33A.23.10.002113
noncoding174G174TGT33AD.20.000657
noncoding174G174TGT33AY.1100.000338
noncoding174G174TGT33AY.1180.000188
noncoding174G174TGT33AY.370.000948
noncoding174G174TGT33AY.4.10.002212
noncoding174G174TGT33AY.560.004815
noncoding174G174TGT33AY.790.003632
noncoding174G174TGT33AY.900.002053
noncoding174G174TGT33AY.910.002191
noncoding174G174TGT33AY.920.000862
noncoding174G174TGT33B.1.1.250.001706
noncoding174G174TGT33B.1.1.330.001263
noncoding174G174TGT33B.1.1.370.000579
noncoding174G174TGT33B.1.1.3890.018182
noncoding174G174TGT33B.1.1.4320.003797
noncoding174G174TGT33B.1.1.4480.006098
noncoding174G174TGT33B.1.1.5070.026087
noncoding174G174TGT33B.1.1.5260.010638
noncoding174G174TGT33B.1.1150.065217
noncoding174G174TGT33B.1.1390.002199
noncoding174G174TGT33B.1.177.620.003576
noncoding174G174TGT33B.1.1890.012876
noncoding174G174TGT33B.1.2340.000396
noncoding174G174TGT33B.1.3110.000824
noncoding174G174TGT33B.1.36.290.001552
noncoding174G174TGT33B.1.3620.004622
noncoding174G174TGT33B.1.3960.002117
noncoding174G174TGT33B.1.4270.000151
noncoding174G174TGT33B.1.5750.00091
noncoding174G174TGT33B.400.001093
noncoding174G174TGT33C.160.003181
noncoding174G174TGT220.111111
noncoding174G174TGT22A0.000774
noncoding174G174TGT22AE.80.000978
noncoding174G174TGT22AY.1070.000932
noncoding174G174TGT22AY.240.000862
noncoding174G174TGT22AY.46.10.002053
noncoding174G174TGT22AY.60.000082
noncoding174G174TGT22AY.740.000231
noncoding174G174TGT22AY.770.002255
noncoding174G174TGT22AY.99.20.000184
noncoding174G174TGT22B.1.1.10.000653
noncoding174G174TGT22B.1.1.2160.001781
noncoding174G174TGT22B.1.1.2660.02439
noncoding174G174TGT22B.1.1.3160.00185
noncoding174G174TGT22B.1.1.3260.003521
noncoding174G174TGT22B.1.1.3740.004751
noncoding174G174TGT22B.1.1.3980.006452
noncoding174G174TGT22B.1.1.4160.00181
noncoding174G174TGT22B.1.1.5240.041667
noncoding174G174TGT22B.1.1110.00235
noncoding174G174TGT22B.1.177.210.000153
noncoding174G174TGT22B.1.177.310.022989
noncoding174G174TGT22B.1.2390.002442
noncoding174G174TGT22B.1.2400.000431
noncoding174G174TGT22B.1.2600.006689
noncoding174G174TGT22B.1.36.190.018519
noncoding174G174TGT22B.1.4160.002538
noncoding174G174TGT22B.1.4430.009346
noncoding174G174TGT22B.1.4970.00063
noncoding174G174TGT22B.1.5270.007407
noncoding174G174TGT22B.450.007663
noncoding174G174TGT22C.2.10.013333
noncoding174G174TGT22D.20.00015
noncoding174G174TGT22N.40.008511
noncoding174G174TGT22P.1.40.001953
noncoding174G174TGT22Q.30.00029
noncoding174G174TGT11A.2.50.000499
noncoding174G174TGT11A.2.5.10.004808
noncoding174G174TGT11A.2.5.20.001572
noncoding174G174TGT11AU.10.001266
noncoding174G174TGT11AY.100.00053
noncoding174G174TGT11AY.1010.00049
noncoding174G174TGT11AY.110.001339
noncoding174G174TGT11AY.1110.000183
noncoding174G174TGT11AY.1140.000231
noncoding174G174TGT11AY.280.00189
noncoding174G174TGT11AY.29.10.000221
noncoding174G174TGT11AY.34.10.00051
noncoding174G174TGT11AY.350.000233
noncoding174G174TGT11AY.380.000499
noncoding174G174TGT11AY.400.000964
noncoding174G174TGT11AY.46.40.000165
noncoding174G174TGT11AY.480.000465
noncoding174G174TGT11AY.530.000288
noncoding174G174TGT11AY.630.000387
noncoding174G174TGT11AY.640.000595
noncoding174G174TGT11AY.7.10.000113
noncoding174G174TGT11AY.720.001361
noncoding174G174TGT11AY.780.001541
noncoding174G174TGT11AY.890.004902
noncoding174G174TGT11AY.90.000068
noncoding174G174TGT11AY.930.000273
noncoding174G174TGT11AY.99.10.001553
noncoding174G174TGT11AZ.20.000821
noncoding174G174TGT11B.1.1.1420.017544
noncoding174G174TGT11B.1.1.160.055556
noncoding174G174TGT11B.1.1.2630.001558
noncoding174G174TGT11B.1.1.2650.003155
noncoding174G174TGT11B.1.1.2730.006757
noncoding174G174TGT11B.1.1.2910.000742
noncoding174G174TGT11B.1.1.2940.001266
noncoding174G174TGT11B.1.1.340.013158
noncoding174G174TGT11B.1.1.3430.020833
noncoding174G174TGT11B.1.1.3540.004386
noncoding174G174TGT11B.1.1.3720.000689
noncoding174G174TGT11B.1.1.3750.011905
noncoding174G174TGT11B.1.1.40.002976
noncoding174G174TGT11B.1.1.4200.001006
noncoding174G174TGT11B.1.1.4350.034483
noncoding174G174TGT11B.1.1.4590.015385
noncoding174G174TGT11B.1.1.4620.008621
noncoding174G174TGT11B.1.1.4860.001577
noncoding174G174TGT11B.1.1.5280.004808
noncoding174G174TGT11B.1.1.630.000386
noncoding174G174TGT11B.1.1.990.02381
noncoding174G174TGT11B.1.1190.010526
noncoding174G174TGT11B.1.177.120.000152
noncoding174G174TGT11B.1.177.40.000211
noncoding174G174TGT11B.1.177.440.000519
noncoding174G174TGT11B.1.177.540.000606
noncoding174G174TGT11B.1.177.70.000165
noncoding174G174TGT11B.1.177.810.000189
noncoding174G174TGT11B.1.214.20.0006
noncoding174G174TGT11B.1.214.30.007143
noncoding174G174TGT11B.1.2220.001692
noncoding174G174TGT11B.1.3360.002439
noncoding174G174TGT11B.1.3480.018182
noncoding174G174TGT11B.1.3490.000715
noncoding174G174TGT11B.1.36.180.00042
noncoding174G174TGT11B.1.3670.000792
noncoding174G174TGT11B.1.3750.00082
noncoding174G174TGT11B.1.3890.001002
noncoding174G174TGT11B.1.3970.004854
noncoding174G174TGT11B.1.438.10.000107
noncoding174G174TGT11B.1.4510.008197
noncoding174G174TGT11B.1.466.20.000391
noncoding174G174TGT11B.1.5030.002488
noncoding174G174TGT11B.1.5160.001957
noncoding174G174TGT11B.1.5380.008065
noncoding174G174TGT11B.1.5510.00129
noncoding174G174TGT11B.1.5600.00463
noncoding174G174TGT11B.1.5670.003333
noncoding174G174TGT11B.1.6010.030303
noncoding174G174TGT11B.1.6270.00202
noncoding174G174TGT11B.1.6360.006711
noncoding174G174TGT11B.40.002208
noncoding174G174TGT11B.410.008
noncoding174G174TGT11B.60.00091
noncoding174G174TGT11C.260.007353
noncoding174G174TGT11C.36.30.000567
noncoding174G174TGT11C.60.037037
noncoding174G174TGT11K.10.02381
noncoding174G174TGT11P.1.100.000269
noncoding174G174TGT11P.1.170.000162
noncoding174G174TGT11P.30.001595
noncoding174G174TGT11P.70.004367
noncoding174G174TGT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.