CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 157

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding157C157TnoncodingCT6536531157-157
noncoding157C157-noncodingC-1361361157-157
noncoding157C157AnoncodingCA26261157-157
noncoding157C157GnoncodingCG661157-157

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding157C157TCT653653All0.000125
noncoding157C157TCT210210B.1.1.70.000188
noncoding157C157-C-136136All0.000026
noncoding157C157TCT5959B.1.5981
noncoding157C157TCT4848AY.440.000292
noncoding157C157-C-3737B.1.1.70.000033
noncoding157C157ACA2626All0.000005
noncoding157C157TCT2626AY.40.00004
noncoding157C157TCT2020B.10.000183
noncoding157C157TCT1919B.1.617.20.000072
noncoding157C157TCT1616AY.250.000096
noncoding157C157TCT1616AY.430.000071
noncoding157C157TCT1313AY.130.002093
noncoding157C157TCT1313B.1.20.000114
noncoding157C157TCT1212AY.1030.000075
noncoding157C157TCT1212P.10.000189
noncoding157C157TCT1010B.1.2430.000696
noncoding157C157-C-99AY.230.000628
noncoding157C157TCT88AY.1020.000212
noncoding157C157TCT88AY.290.000126
noncoding157C157-C-88AY.430.000035
noncoding157C157-C-88B.1.1770.000105
noncoding157C157TCT88B.1.4970.002518
noncoding157C157ACA77B.1.1.70.000006
noncoding157C157GCG66All0.000001
noncoding157C157TCT66B.1.5760.00544
noncoding157C157TCT55AY.1180.000313
noncoding157C157-C-55AY.40.000008
noncoding157C157TCT55B.1.177.120.000758
noncoding157C157TCT55N.20.192308
noncoding157C157TCT44AY.1000.000184
noncoding157C157TCT44AY.110.005355
noncoding157C157TCT44AY.120.10.001284
noncoding157C157TCT44AY.46.40.000658
noncoding157C157TCT44AY.7.10.000451
noncoding157C157TCT44AY.99.20.000369
noncoding157C157TCT44B.1.1.2220.000816
noncoding157C157-C-44B.1.1.330.001684
noncoding157C157-C-44B.1.1.3480.003185
noncoding157C157TCT44B.1.1770.000053
noncoding157C157ACA44B.1.20.000035
noncoding157C157TCT44B.1.564.10.006309
noncoding157C157-C-44C.10.009569
noncoding157C157TCT33AY.270.000194
noncoding157C157TCT33AY.4.20.000065
noncoding157C157TCT33AY.4.2.10.000447
noncoding157C157TCT33AY.50.000062
noncoding157C157-C-33B.1.10.000054
noncoding157C157TCT33B.1.1.280.000934
noncoding157C157TCT33B.1.1.2840.000322
noncoding157C157-C-33B.1.1.4480.006098
noncoding157C157GCG33B.1.1.70.000003
noncoding157C157ACA33B.1.617.20.000011
noncoding157C157-C-22AY.120.000632
noncoding157C157TCT22AY.140.000176
noncoding157C157TCT22AY.200.000078
noncoding157C157TCT22AY.230.000139
noncoding157C157TCT22AY.260.000057
noncoding157C157TCT22AY.30.00002
noncoding157C157-C-22AY.330.000134
noncoding157C157-C-22AY.34.10.00102
noncoding157C157TCT22AY.390.000049
noncoding157C157-C-22AY.4.40.000818
noncoding157C157TCT22AY.460.000208
noncoding157C157-C-22AY.60.000082
noncoding157C157TCT22AY.70.000392
noncoding157C157TCT22AY.90.000135
noncoding157C157ACA22B.1.10.000036
noncoding157C157TCT22B.1.1.4320.002532
noncoding157C157-C-22B.1.1600.000062
noncoding157C157TCT22B.1.160.160.001859
noncoding157C157TCT22B.1.4290.000047
noncoding157C157TCT22B.1.438.10.000215
noncoding157C157TCT22B.1.5260.000047
noncoding157C157ACA22B.1.6030.021277
noncoding157C157TCT22B.1.6210.000177
noncoding157C157TCT22C.350.001548
noncoding157C157TCT22D.20.00015
noncoding157C157-C-22N.60.014184
noncoding157C157-C-22P.20.000373
noncoding157C157-C-11A.10.000282
noncoding157C157TCT11AY.1110.000183
noncoding157C157-C-11AY.1160.000287
noncoding157C157TCT11AY.1200.000037
noncoding157C157TCT11AY.1210.000135
noncoding157C157ACA11AY.250.000006
noncoding157C157ACA11AY.260.000028
noncoding157C157TCT11AY.29.10.000221
noncoding157C157-C-11AY.30.00001
noncoding157C157TCT11AY.300.000396
noncoding157C157TCT11AY.360.000148
noncoding157C157-C-11AY.380.000499
noncoding157C157TCT11AY.39.10.00004
noncoding157C157TCT11AY.4.50.000107
noncoding157C157-C-11AY.4.50.000107
noncoding157C157-C-11AY.410.000294
noncoding157C157TCT11AY.420.00004
noncoding157C157-C-11AY.450.000122
noncoding157C157-C-11AY.460.000104
noncoding157C157TCT11AY.470.000031
noncoding157C157TCT11AY.5.40.000277
noncoding157C157-C-11AY.600.000938
noncoding157C157-C-11AY.680.000274
noncoding157C157TCT11AY.710.000475
noncoding157C157-C-11AY.75.10.00018
noncoding157C157TCT11AY.850.000427
noncoding157C157-C-11AY.90.000068
noncoding157C157TCT11AY.9.10.000084
noncoding157C157-C-11AY.9.10.000084
noncoding157C157ACA11AY.9.20.000037
noncoding157C157TCT11AY.900.000684
noncoding157C157TCT11AY.920.000287
noncoding157C157-C-11AY.940.000443
noncoding157C157-C-11AY.950.000761
noncoding157C157-C-11AY.98.10.000048
noncoding157C157TCT11AY.98.10.000048
noncoding157C157ACA11AY.99.10.001553
noncoding157C157TCT11B0.000128
noncoding157C157-C-11B.10.000009
noncoding157C157GCG11B.10.000009
noncoding157C157TCT11B.1.10.000018
noncoding157C157GCG11B.1.1.1390.022727
noncoding157C157-C-11B.1.1.1660.033333
noncoding157C157TCT11B.1.1.1980.001468
noncoding157C157TCT11B.1.1.2140.000055
noncoding157C157-C-11B.1.1.2320.001815
noncoding157C157ACA11B.1.1.2940.001266
noncoding157C157TCT11B.1.1.3030.002762
noncoding157C157TCT11B.1.1.3040.002809
noncoding157C157-C-11B.1.1.3220.008772
noncoding157C157TCT11B.1.1.3510.002793
noncoding157C157-C-11B.1.1.370.000193
noncoding157C157-C-11B.1.1.4090.002833
noncoding157C157TCT11B.1.1.4340.000349
noncoding157C157TCT11B.1.1.4480.002033
noncoding157C157TCT11B.1.1.5190.00004
noncoding157C157TCT11B.1.1.700.000341
noncoding157C157-C-11B.1.1.990.02381
noncoding157C157TCT11B.1.177.150.000631
noncoding157C157-C-11B.1.177.180.00116
noncoding157C157TCT11B.1.177.350.000691
noncoding157C157-C-11B.1.177.40.000211
noncoding157C157-C-11B.1.177.540.000606
noncoding157C157TCT11B.1.1990.004132
noncoding157C157-C-11B.1.20.000009
noncoding157C157-C-11B.1.2580.000067
noncoding157C157TCT11B.1.2580.000067
noncoding157C157GCG11B.1.258.110.000396
noncoding157C157ACA11B.1.258.170.000104
noncoding157C157-C-11B.1.258.30.001675
noncoding157C157TCT11B.1.3510.00003
noncoding157C157TCT11B.1.351.20.000303
noncoding157C157-C-11B.1.360.000146
noncoding157C157TCT11B.1.36.180.00042
noncoding157C157TCT11B.1.36.220.001208
noncoding157C157TCT11B.1.3670.000792
noncoding157C157TCT11B.1.3960.000706
noncoding157C157-C-11B.1.4160.001269
noncoding157C157TCT11B.1.4270.00005
noncoding157C157-C-11B.1.4290.000024
noncoding157C157TCT11B.1.466.20.000391
noncoding157C157ACA11B.1.5260.000024
noncoding157C157TCT11B.1.5610.000397
noncoding157C157TCT11B.1.5780.017857
noncoding157C157TCT11B.1.5960.000087
noncoding157C157-C-11B.1.617.20.000004
noncoding157C157ACA11B.40.002208
noncoding157C157TCT11B.4.50.011905
noncoding157C157-C-11C.350.000774
noncoding157C157TCT11C.370.000116
noncoding157C157-C-11N.40.004255
noncoding157C157TCT11P.1.140.000048

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.