CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 100

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding100C100TnoncodingCT12032120321100-100
noncoding100C100-noncodingC-1721721100-100
noncoding100C100AnoncodingCA96961100-100
noncoding100C100GnoncodingCG991100-100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding100C100TCT1203212032All0.002301
noncoding100C100TCT49794979P.20.929265
noncoding100C100TCT42834283B.1.1.70.003834
noncoding100C100TCT734734AY.40.001142
noncoding100C100TCT236236B.1.617.20.000889
noncoding100C100TCT217217AY.430.000961
noncoding100C100-C-172172All0.000033
noncoding100C100TCT167167Q.30.02422
noncoding100C100TCT102102B.1.20.000898
noncoding100C100ACA9696All0.000018
noncoding100C100TCT7474AY.1190.002613
noncoding100C100TCT7171AY.30.000706
noncoding100C100TCT6262B.10.000568
noncoding100C100TCT5858AY.250.000349
noncoding100C100TCT5858P.10.000914
noncoding100C100TCT5757B.1.177.810.010791
noncoding100C100TCT4646B.1.1.280.014317
noncoding100C100TCT4545AY.1030.000279
noncoding100C100TCT3838AY.440.000231
noncoding100C100TCT3737C.191
noncoding100C100TCT3737P.1.140.001769
noncoding100C100TCT3131B.1.1.5190.001231
noncoding100C100-C-2929B.1.1.70.000026
noncoding100C100TCT2828B.1.3510.000832
noncoding100C100TCT2727AY.60.00111
noncoding100C100TCT2727B.1.10.00049
noncoding100C100TCT2323B.1.1770.000303
noncoding100C100TCT2222B.1.1.2840.002363
noncoding100C100TCT2020B.1.6370.001461
noncoding100C100TCT1919B.1.2580.001264
noncoding100C100TCT1818B.1.4290.000424
noncoding100C100TCT1717AY.1020.000451
noncoding100C100ACA1616B.1.1.70.000014
noncoding100C100TCT1616B.1.5260.000376
noncoding100C100ACA1515B.1.1.700.005116
noncoding100C100TCT1515B.1.1600.000468
noncoding100C100TCT1414AY.290.000221
noncoding100C100-C-1313AY.430.000058
noncoding100C100TCT1313R.10.00117
noncoding100C100TCT1111AY.260.000311
noncoding100C100TCT1111AY.270.000712
noncoding100C100TCT1111AY.390.000272
noncoding100C100-C-1010AY.230.000697
noncoding100C100GCG99All0.000002
noncoding100C100TCT99AY.230.000628
noncoding100C100TCT99AY.50.000186
noncoding100C100ACA99AY.98.10.000436
noncoding100C100ACA99B.10.000082
noncoding100C100TCT99B.1.214.20.005396
noncoding100C100TCT88AY.4.20.000174
noncoding100C100TCT88AY.420.000322
noncoding100C100TCT77A.50.013462
noncoding100C100TCT77AY.1210.000947
noncoding100C100-C-77AY.390.000173
noncoding100C100TCT77AY.530.002013
noncoding100C100TCT77AY.550.006422
noncoding100C100TCT77B.1.1.2030.118644
noncoding100C100TCT77B.1.1.330.002946
noncoding100C100TCT77B.1.1950.035176
noncoding100C100TCT66AY.90.000406
noncoding100C100-C-66B.1.1770.000079
noncoding100C100TCT66B.1.2220.010152
noncoding100C100TCT66B.1.36.290.003104
noncoding100C100TCT66B.1.5250.000679
noncoding100C100TCT55AY.1000.00023
noncoding100C100-C-55AY.40.000008
noncoding100C100-C-55AY.440.00003
noncoding100C100TCT55AY.470.000156
noncoding100C100TCT55B.1.1.2140.000277
noncoding100C100TCT55B.1.1.2610.043103
noncoding100C100TCT55B.1.1.630.001929
noncoding100C100TCT55B.1.360.00073
noncoding100C100TCT55Q.10.000632
noncoding100C100TCT440.222222
noncoding100C100TCT44AY.200.000155
noncoding100C100-C-44AY.330.000267
noncoding100C100TCT44AY.870.003331
noncoding100C100-C-44B.10.000037
noncoding100C100-C-44B.1.10.000073
noncoding100C100TCT44B.1.1.2170.014545
noncoding100C100-C-44B.1.1.330.001684
noncoding100C100-C-44B.1.1.3480.003185
noncoding100C100TCT44B.1.36.80.004
noncoding100C100-C-44C.10.009569
noncoding100C100TCT44P.1.10.001271
noncoding100C100TCT44P.1.170.000647
noncoding100C100TCT44P.1.70.001277
noncoding100C100TCT44Q.80.00066
noncoding100C100TCT33A0.001161
noncoding100C100TCT33AY.1040.005952
noncoding100C100ACA33AY.1080.003308
noncoding100C100TCT33AY.1110.000549
noncoding100C100TCT33AY.1130.000427
noncoding100C100TCT33AY.1170.000254
noncoding100C100TCT33AY.1180.000188
noncoding100C100TCT33AY.1200.000112
noncoding100C100ACA33AY.250.000018
noncoding100C100TCT33AY.330.0002
noncoding100C100TCT33AY.370.000948
noncoding100C100-C-33AY.420.000121
noncoding100C100TCT33AY.46.50.000595
noncoding100C100TCT33AY.46.60.000217
noncoding100C100-C-33AY.50.000062
noncoding100C100TCT33AY.510.002727
noncoding100C100TCT33AY.610.000314
noncoding100C100TCT33AY.99.20.000276
noncoding100C100TCT33B.1.1.3110.001074
noncoding100C100TCT33B.1.1.3160.002775
noncoding100C100-C-33B.1.1.5190.000119
noncoding100C100TCT33B.1.177.750.003122
noncoding100C100TCT33B.1.2210.000213
noncoding100C100TCT33B.1.258.110.001189
noncoding100C100TCT33B.1.258.170.000312
noncoding100C100TCT33B.1.4270.000151
noncoding100C100TCT33B.1.466.20.001174
noncoding100C100TCT33B.1.5770.002062
noncoding100C100TCT33C.36.30.001702
noncoding100C100TCT33P.30.004785
noncoding100C100TCT33P.60.009434
noncoding100C100TCT22A.280.005291
noncoding100C100TCT22AY.10.000791
noncoding100C100-C-22AY.120.000632
noncoding100C100TCT22AY.160.000759
noncoding100C100ACA22AY.20.000712
noncoding100C100ACA22AY.30.00002
noncoding100C100TCT22AY.340.000194
noncoding100C100-C-22AY.340.000194
noncoding100C100-C-22AY.4.40.000818
noncoding100C100ACA22AY.430.000009
noncoding100C100TCT22AY.450.000243
noncoding100C100-C-22AY.450.000243
noncoding100C100TCT22AY.460.000208
noncoding100C100-C-22AY.460.000208
noncoding100C100TCT22AY.46.10.002053
noncoding100C100TCT22AY.5.30.000675
noncoding100C100TCT22AY.70.000392
noncoding100C100TCT22AY.700.000417
noncoding100C100-C-22AY.75.10.000361
noncoding100C100TCT22AY.850.000854
noncoding100C100TCT22AY.980.000158
noncoding100C100TCT22AY.98.10.000097
noncoding100C100TCT22B0.000256
noncoding100C100ACA22B.1.10.000036
noncoding100C100TCT22B.1.1.1920.004619
noncoding100C100TCT22B.1.1.2940.002532
noncoding100C100-C-22B.1.1.4480.004065
noncoding100C100TCT22B.1.110.30.001437
noncoding100C100TCT22B.1.160.100.016129
noncoding100C100TCT22B.1.177.120.000303
noncoding100C100-C-22B.1.177.810.000379
noncoding100C100TCT22B.1.177.820.000955
noncoding100C100-C-22B.1.20.000018
noncoding100C100TCT22B.1.2060.001631
noncoding100C100TCT22B.1.2320.001075
noncoding100C100ACA22B.1.2340.000264
noncoding100C100TCT22B.1.2430.000139
noncoding100C100TCT22B.1.258.30.00335
noncoding100C100TCT22B.1.351.20.000605
noncoding100C100ACA22B.1.5250.000226
noncoding100C100TCT22B.1.5950.000522
noncoding100C100TCT22B.1.5960.000174
noncoding100C100-C-22B.1.617.20.000008
noncoding100C100TCT22B.1.6230.001073
noncoding100C100ACA22B.1.90.012346
noncoding100C100TCT22C.360.001821
noncoding100C100TCT22D.20.00015
noncoding100C100-C-22N.60.014184
noncoding100C100ACA22P.10.000032
noncoding100C100-C-22P.20.000373
noncoding100C100ACA11A0.000387
noncoding100C100-C-11A.10.000282
noncoding100C100GCG11AY.1030.000006
noncoding100C100TCT11AY.1060.000335
noncoding100C100TCT11AY.1080.001103
noncoding100C100TCT11AY.1160.000287
noncoding100C100-C-11AY.1160.000287
noncoding100C100ACA11AY.1170.000085
noncoding100C100GCG11AY.1190.000035
noncoding100C100TCT11AY.120.000316
noncoding100C100TCT11AY.120.10.000321
noncoding100C100TCT11AY.130.000161
noncoding100C100-C-11AY.140.000088
noncoding100C100TCT11AY.16.10.00047
noncoding100C100ACA11AY.260.000028
noncoding100C100-C-11AY.30.00001
noncoding100C100TCT11AY.3.10.000085
noncoding100C100TCT11AY.34.10.00051
noncoding100C100-C-11AY.34.10.00051
noncoding100C100TCT11AY.360.000148
noncoding100C100ACA11AY.370.000316
noncoding100C100-C-11AY.370.000316
noncoding100C100-C-11AY.380.000499
noncoding100C100TCT11AY.380.000499
noncoding100C100ACA11AY.40.000002
noncoding100C100TCT11AY.4.10.000737
noncoding100C100ACA11AY.4.20.000022
noncoding100C100ACA11AY.4.2.10.000149
noncoding100C100TCT11AY.4.30.000842
noncoding100C100TCT11AY.4.50.000107
noncoding100C100-C-11AY.410.000294
noncoding100C100GCG11AY.440.000006
noncoding100C100-C-11AY.46.20.000635
noncoding100C100-C-11AY.480.000465
noncoding100C100ACA11AY.50.000021
noncoding100C100TCT11AY.5.40.000277
noncoding100C100-C-11AY.530.000288
noncoding100C100TCT11AY.540.000095
noncoding100C100TCT11AY.560.001605
noncoding100C100TCT11AY.580.000907
noncoding100C100TCT11AY.590.00053
noncoding100C100-C-11AY.600.000938
noncoding100C100TCT11AY.620.000436
noncoding100C100TCT11AY.630.000387
noncoding100C100-C-11AY.680.000274
noncoding100C100TCT11AY.690.000187
noncoding100C100TCT11AY.7.10.000113
noncoding100C100TCT11AY.710.000475
noncoding100C100TCT11AY.730.000665
noncoding100C100TCT11AY.740.000116
noncoding100C100TCT11AY.750.000056
noncoding100C100ACA11AY.75.10.00018
noncoding100C100TCT11AY.860.00083
noncoding100C100-C-11AY.9.10.000084
noncoding100C100TCT11AY.900.000684
noncoding100C100-C-11AY.940.000443
noncoding100C100-C-11AY.950.000761
noncoding100C100-C-11AY.98.10.000048
noncoding100C100ACA11B0.000128
noncoding100C100GCG11B0.000128
noncoding100C100TCT11B.1.1.10.000327
noncoding100C100-C-11B.1.1.1390.022727
noncoding100C100TCT11B.1.1.1520.04
noncoding100C100TCT11B.1.1.1570.000913
noncoding100C100-C-11B.1.1.1660.033333
noncoding100C100-C-11B.1.1.1700.001247
noncoding100C100TCT11B.1.1.2210.010101
noncoding100C100TCT11B.1.1.2220.000204
noncoding100C100-C-11B.1.1.2320.001815
noncoding100C100TCT11B.1.1.250.000569
noncoding100C100TCT11B.1.1.2790.001121
noncoding100C100-C-11B.1.1.2940.001266
noncoding100C100-C-11B.1.1.3110.000358
noncoding100C100ACA11B.1.1.3110.000358
noncoding100C100-C-11B.1.1.3120.001912
noncoding100C100-C-11B.1.1.3220.008772
noncoding100C100TCT11B.1.1.3220.008772
noncoding100C100TCT11B.1.1.370.000193
noncoding100C100TCT11B.1.1.3720.000689
noncoding100C100TCT11B.1.1.3980.003226
noncoding100C100TCT11B.1.1.4020.011111
noncoding100C100TCT11B.1.1.4090.002833
noncoding100C100TCT11B.1.1.4160.000905
noncoding100C100TCT11B.1.1.440.00241
noncoding100C100GCG11B.1.1.50.008333
noncoding100C100TCT11B.1.1.5250.005464
noncoding100C100TCT11B.1.1.5280.004808
noncoding100C100-C-11B.1.1.700.000341
noncoding100C100TCT11B.1.1.700.000341
noncoding100C100-C-11B.1.1.990.02381
noncoding100C100TCT11B.1.1190.010526
noncoding100C100TCT11B.1.1200.007692
noncoding100C100TCT11B.1.1260.001276
noncoding100C100TCT11B.1.1280.000635
noncoding100C100TCT11B.1.1470.000756
noncoding100C100-C-11B.1.1600.000031
noncoding100C100ACA11B.1.1770.000013
noncoding100C100-C-11B.1.177.100.000878
noncoding100C100-C-11B.1.177.170.000821
noncoding100C100TCT11B.1.177.180.00116
noncoding100C100TCT11B.1.177.210.000076
noncoding100C100TCT11B.1.177.440.000519
noncoding100C100TCT11B.1.177.460.000918
noncoding100C100TCT11B.1.177.500.004695
noncoding100C100TCT11B.1.177.770.000726
noncoding100C100TCT11B.1.177.840.006667
noncoding100C100TCT11B.1.2340.000132
noncoding100C100ACA11B.1.2580.000067
noncoding100C100-C-11B.1.258.170.000104
noncoding100C100-C-11B.1.258.30.001675
noncoding100C100TCT11B.1.2930.0125
noncoding100C100TCT11B.1.3290.000608
noncoding100C100ACA11B.1.360.000146
noncoding100C100GCG11B.1.36.160.001425
noncoding100C100-C-11B.1.36.170.000494
noncoding100C100TCT11B.1.3610.001289
noncoding100C100TCT11B.1.3690.000285
noncoding100C100ACA11B.1.3710.001122
noncoding100C100ACA11B.1.3780.006849
noncoding100C100ACA11B.1.3870.04
noncoding100C100-C-11B.1.4160.001269
noncoding100C100ACA11B.1.4240.008065
noncoding100C100-C-11B.1.4290.000024
noncoding100C100TCT11B.1.4970.000315
noncoding100C100TCT11B.1.4990.00105
noncoding100C100TCT11B.1.5170.000427
noncoding100C100-C-11B.1.5250.000113
noncoding100C100TCT11B.1.5330.009615
noncoding100C100TCT11B.1.5510.00129
noncoding100C100TCT11B.1.5760.000907
noncoding100C100TCT11B.1.5880.00091
noncoding100C100TCT11B.1.595.40.007299
noncoding100C100ACA11B.1.6090.000479
noncoding100C100TCT11B.1.6090.000479
noncoding100C100-C-11B.1.617.10.000129
noncoding100C100GCG11B.1.617.20.000004
noncoding100C100ACA11B.1.617.20.000004
noncoding100C100TCT11B.1.6180.004032
noncoding100C100TCT11B.1.6210.000089
noncoding100C100ACA11B.1.6230.000536
noncoding100C100TCT11B.1.6280.000352
noncoding100C100ACA11B.1.6300.005236
noncoding100C100ACA11B.390.002331
noncoding100C100GCG11B.40.002208
noncoding100C100ACA11B.40.002208
noncoding100C100ACA11B.6.60.000889
noncoding100C100TCT11C.2.10.006667
noncoding100C100TCT11C.230.005814
noncoding100C100TCT11C.300.001727
noncoding100C100TCT11C.350.000774
noncoding100C100-C-11C.350.000774
noncoding100C100-C-11N.40.004255
noncoding100C100GCG11P.10.000016
noncoding100C100-C-11P.1.130.000898
noncoding100C100TCT11P.1.150.000232
noncoding100C100TCT11P.1.20.001156
noncoding100C100TCT11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.