CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = noncoding : CodonNum = 100

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
noncoding100C100TnoncodingCT12032120321100-100
noncoding100C100-noncodingC-1721721100-100
noncoding100C100AnoncodingCA96961100-100
noncoding100C100GnoncodingCG991100-100

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
noncoding100C100TCT1203212032All0.002301
noncoding100C100TCT49794979P.20.929265
noncoding100C100TCT42834283B.1.1.70.003834
noncoding100C100TCT734734AY.40.001142
noncoding100C100TCT236236B.1.617.20.000889
noncoding100C100TCT217217AY.430.000961
noncoding100C100-C-172172All0.000033
noncoding100C100TCT167167Q.30.02422
noncoding100C100TCT102102B.1.20.000898
noncoding100C100ACA9696All0.000018
noncoding100C100TCT7474AY.1190.002613
noncoding100C100TCT7171AY.30.000706
noncoding100C100TCT6262B.10.000568
noncoding100C100TCT5858AY.250.000349
noncoding100C100TCT5858P.10.000914
noncoding100C100TCT5757B.1.177.810.010791
noncoding100C100TCT4646B.1.1.280.014317
noncoding100C100TCT4545AY.1030.000279
noncoding100C100TCT3838AY.440.000231
noncoding100C100TCT3737C.191
noncoding100C100TCT3737P.1.140.001769
noncoding100C100TCT3131B.1.1.5190.001231
noncoding100C100-C-2929B.1.1.70.000026
noncoding100C100TCT2828B.1.3510.000832
noncoding100C100TCT2727AY.60.00111
noncoding100C100TCT2727B.1.10.00049
noncoding100C100TCT2323B.1.1770.000303
noncoding100C100TCT2222B.1.1.2840.002363
noncoding100C100TCT2020B.1.6370.001461
noncoding100C100TCT1919B.1.2580.001264
noncoding100C100TCT1818B.1.4290.000424
noncoding100C100TCT1717AY.1020.000451
noncoding100C100ACA1616B.1.1.70.000014
noncoding100C100TCT1616B.1.5260.000376
noncoding100C100ACA1515B.1.1.700.005116
noncoding100C100TCT1515B.1.1600.000468
noncoding100C100TCT1414AY.290.000221
noncoding100C100-C-1313AY.430.000058
noncoding100C100TCT1313R.10.00117
noncoding100C100TCT1111AY.260.000311
noncoding100C100TCT1111AY.270.000712
noncoding100C100TCT1111AY.390.000272
noncoding100C100-C-1010AY.230.000697
noncoding100C100GCG99All0.000002
noncoding100C100TCT99AY.230.000628
noncoding100C100TCT99AY.50.000186
noncoding100C100ACA99AY.98.10.000436
noncoding100C100ACA99B.10.000082
noncoding100C100TCT99B.1.214.20.005396
noncoding100C100TCT88AY.4.20.000174
noncoding100C100TCT88AY.420.000322
noncoding100C100TCT77A.50.013462
noncoding100C100TCT77AY.1210.000947
noncoding100C100-C-77AY.390.000173
noncoding100C100TCT77AY.530.002013
noncoding100C100TCT77AY.550.006422
noncoding100C100TCT77B.1.1.2030.118644
noncoding100C100TCT77B.1.1.330.002946
noncoding100C100TCT77B.1.1950.035176
noncoding100C100TCT66AY.90.000406
noncoding100C100-C-66B.1.1770.000079
noncoding100C100TCT66B.1.2220.010152
noncoding100C100TCT66B.1.36.290.003104
noncoding100C100TCT66B.1.5250.000679
noncoding100C100TCT55AY.1000.00023
noncoding100C100-C-55AY.40.000008
noncoding100C100-C-55AY.440.00003
noncoding100C100TCT55AY.470.000156
noncoding100C100TCT55B.1.1.2140.000277
noncoding100C100TCT55B.1.1.2610.043103
noncoding100C100TCT55B.1.1.630.001929
noncoding100C100TCT55B.1.360.00073
noncoding100C100TCT55Q.10.000632
noncoding100C100TCT440.222222
noncoding100C100TCT44AY.200.000155
noncoding100C100-C-44AY.330.000267
noncoding100C100TCT44AY.870.003331
noncoding100C100-C-44B.10.000037
noncoding100C100-C-44B.1.10.000073
noncoding100C100TCT44B.1.1.2170.014545
noncoding100C100-C-44B.1.1.330.001684
noncoding100C100-C-44B.1.1.3480.003185
noncoding100C100TCT44B.1.36.80.004
noncoding100C100-C-44C.10.009569
noncoding100C100TCT44P.1.10.001271
noncoding100C100TCT44P.1.170.000647
noncoding100C100TCT44P.1.70.001277
noncoding100C100TCT44Q.80.00066
noncoding100C100TCT33A0.001161
noncoding100C100TCT33AY.1040.005952
noncoding100C100ACA33AY.1080.003308
noncoding100C100TCT33AY.1110.000549
noncoding100C100TCT33AY.1130.000427
noncoding100C100TCT33AY.1170.000254
noncoding100C100TCT33AY.1180.000188
noncoding100C100TCT33AY.1200.000112
noncoding100C100ACA33AY.250.000018
noncoding100C100TCT33AY.330.0002
noncoding100C100TCT33AY.370.000948
noncoding100C100-C-33AY.420.000121
noncoding100C100TCT33AY.46.50.000595
noncoding100C100TCT33AY.46.60.000217
noncoding100C100-C-33AY.50.000062
noncoding100C100TCT33AY.510.002727
noncoding100C100TCT33AY.610.000314
noncoding100C100TCT33AY.99.20.000276
noncoding100C100TCT33B.1.1.3110.001074
noncoding100C100TCT33B.1.1.3160.002775
noncoding100C100-C-33B.1.1.5190.000119
noncoding100C100TCT33B.1.177.750.003122
noncoding100C100TCT33B.1.2210.000213
noncoding100C100TCT33B.1.258.110.001189
noncoding100C100TCT33B.1.258.170.000312
noncoding100C100TCT33B.1.4270.000151
noncoding100C100TCT33B.1.466.20.001174
noncoding100C100TCT33B.1.5770.002062
noncoding100C100TCT33C.36.30.001702
noncoding100C100TCT33P.30.004785
noncoding100C100TCT33P.60.009434
noncoding100C100TCT22A.280.005291
noncoding100C100TCT22AY.10.000791
noncoding100C100-C-22AY.120.000632
noncoding100C100TCT22AY.160.000759
noncoding100C100ACA22AY.20.000712
noncoding100C100ACA22AY.30.00002
noncoding100C100TCT22AY.340.000194
noncoding100C100-C-22AY.340.000194
noncoding100C100-C-22AY.4.40.000818
noncoding100C100ACA22AY.430.000009
noncoding100C100TCT22AY.450.000243
noncoding100C100-C-22AY.450.000243
noncoding100C100TCT22AY.460.000208
noncoding100C100-C-22AY.460.000208
noncoding100C100TCT22AY.46.10.002053
noncoding100C100TCT22AY.5.30.000675
noncoding100C100TCT22AY.70.000392
noncoding100C100TCT22AY.700.000417
noncoding100C100-C-22AY.75.10.000361
noncoding100C100TCT22AY.850.000854
noncoding100C100TCT22AY.980.000158
noncoding100C100TCT22AY.98.10.000097
noncoding100C100TCT22B0.000256
noncoding100C100ACA22B.1.10.000036
noncoding100C100TCT22B.1.1.1920.004619
noncoding100C100TCT22B.1.1.2940.002532
noncoding100C100-C-22B.1.1.4480.004065
noncoding100C100TCT22B.1.110.30.001437
noncoding100C100TCT22B.1.160.100.016129
noncoding100C100TCT22B.1.177.120.000303
noncoding100C100-C-22B.1.177.810.000379
noncoding100C100TCT22B.1.177.820.000955
noncoding100C100-C-22B.1.20.000018
noncoding100C100TCT22B.1.2060.001631
noncoding100C100TCT22B.1.2320.001075
noncoding100C100ACA22B.1.2340.000264
noncoding100C100TCT22B.1.2430.000139
noncoding100C100TCT22B.1.258.30.00335
noncoding100C100TCT22B.1.351.20.000605
noncoding100C100ACA22B.1.5250.000226
noncoding100C100TCT22B.1.5950.000522
noncoding100C100TCT22B.1.5960.000174
noncoding100C100-C-22B.1.617.20.000008
noncoding100C100TCT22B.1.6230.001073
noncoding100C100ACA22B.1.90.012346
noncoding100C100TCT22C.360.001821
noncoding100C100TCT22D.20.00015
noncoding100C100-C-22N.60.014184
noncoding100C100ACA22P.10.000032
noncoding100C100-C-22P.20.000373
noncoding100C100ACA11A0.000387
noncoding100C100-C-11A.10.000282
noncoding100C100GCG11AY.1030.000006
noncoding100C100TCT11AY.1060.000335
noncoding100C100TCT11AY.1080.001103
noncoding100C100TCT11AY.1160.000287
noncoding100C100-C-11AY.1160.000287
noncoding100C100ACA11AY.1170.000085
noncoding100C100GCG11AY.1190.000035
noncoding100C100TCT11AY.120.000316
noncoding100C100TCT11AY.120.10.000321
noncoding100C100TCT11AY.130.000161
noncoding100C100-C-11AY.140.000088
noncoding100C100TCT11AY.16.10.00047
noncoding100C100ACA11AY.260.000028
noncoding100C100-C-11AY.30.00001
noncoding100C100TCT11AY.3.10.000085
noncoding100C100TCT11AY.34.10.00051
noncoding100C100-C-11AY.34.10.00051
noncoding100C100TCT11AY.360.000148
noncoding100C100ACA11AY.370.000316
noncoding100C100-C-11AY.370.000316
noncoding100C100-C-11AY.380.000499
noncoding100C100TCT11AY.380.000499
noncoding100C100ACA11AY.40.000002
noncoding100C100TCT11AY.4.10.000737
noncoding100C100ACA11AY.4.20.000022
noncoding100C100ACA11AY.4.2.10.000149
noncoding100C100TCT11AY.4.30.000842
noncoding100C100TCT11AY.4.50.000107
noncoding100C100-C-11AY.410.000294
noncoding100C100GCG11AY.440.000006
noncoding100C100-C-11AY.46.20.000635
noncoding100C100-C-11AY.480.000465
noncoding100C100ACA11AY.50.000021
noncoding100C100TCT11AY.5.40.000277
noncoding100C100-C-11AY.530.000288
noncoding100C100TCT11AY.540.000095
noncoding100C100TCT11AY.560.001605
noncoding100C100TCT11AY.580.000907
noncoding100C100TCT11AY.590.00053
noncoding100C100-C-11AY.600.000938
noncoding100C100TCT11AY.620.000436
noncoding100C100TCT11AY.630.000387
noncoding100C100-C-11AY.680.000274
noncoding100C100TCT11AY.690.000187
noncoding100C100TCT11AY.7.10.000113
noncoding100C100TCT11AY.710.000475
noncoding100C100TCT11AY.730.000665
noncoding100C100TCT11AY.740.000116
noncoding100C100TCT11AY.750.000056
noncoding100C100ACA11AY.75.10.00018
noncoding100C100TCT11AY.860.00083
noncoding100C100-C-11AY.9.10.000084
noncoding100C100TCT11AY.900.000684
noncoding100C100-C-11AY.940.000443
noncoding100C100-C-11AY.950.000761
noncoding100C100-C-11AY.98.10.000048
noncoding100C100ACA11B0.000128
noncoding100C100GCG11B0.000128
noncoding100C100TCT11B.1.1.10.000327
noncoding100C100-C-11B.1.1.1390.022727
noncoding100C100TCT11B.1.1.1520.04
noncoding100C100TCT11B.1.1.1570.000913
noncoding100C100-C-11B.1.1.1660.033333
noncoding100C100-C-11B.1.1.1700.001247
noncoding100C100TCT11B.1.1.2210.010101
noncoding100C100TCT11B.1.1.2220.000204
noncoding100C100-C-11B.1.1.2320.001815
noncoding100C100TCT11B.1.1.250.000569
noncoding100C100TCT11B.1.1.2790.001121
noncoding100C100-C-11B.1.1.2940.001266
noncoding100C100-C-11B.1.1.3110.000358
noncoding100C100ACA11B.1.1.3110.000358
noncoding100C100-C-11B.1.1.3120.001912
noncoding100C100-C-11B.1.1.3220.008772
noncoding100C100TCT11B.1.1.3220.008772
noncoding100C100TCT11B.1.1.370.000193
noncoding100C100TCT11B.1.1.3720.000689
noncoding100C100TCT11B.1.1.3980.003226
noncoding100C100TCT11B.1.1.4020.011111
noncoding100C100TCT11B.1.1.4090.002833
noncoding100C100TCT11B.1.1.4160.000905
noncoding100C100TCT11B.1.1.440.00241
noncoding100C100GCG11B.1.1.50.008333
noncoding100C100TCT11B.1.1.5250.005464
noncoding100C100TCT11B.1.1.5280.004808
noncoding100C100-C-11B.1.1.700.000341
noncoding100C100TCT11B.1.1.700.000341
noncoding100C100-C-11B.1.1.990.02381
noncoding100C100TCT11B.1.1190.010526
noncoding100C100TCT11B.1.1200.007692
noncoding100C100TCT11B.1.1260.001276
noncoding100C100TCT11B.1.1280.000635
noncoding100C100TCT11B.1.1470.000756
noncoding100C100-C-11B.1.1600.000031
noncoding100C100ACA11B.1.1770.000013
noncoding100C100-C-11B.1.177.100.000878
noncoding100C100-C-11B.1.177.170.000821
noncoding100C100TCT11B.1.177.180.00116
noncoding100C100TCT11B.1.177.210.000076
noncoding100C100TCT11B.1.177.440.000519
noncoding100C100TCT11B.1.177.460.000918
noncoding100C100TCT11B.1.177.500.004695
noncoding100C100TCT11B.1.177.770.000726
noncoding100C100TCT11B.1.177.840.006667
noncoding100C100TCT11B.1.2340.000132
noncoding100C100ACA11B.1.2580.000067
noncoding100C100-C-11B.1.258.170.000104
noncoding100C100-C-11B.1.258.30.001675
noncoding100C100TCT11B.1.2930.0125
noncoding100C100TCT11B.1.3290.000608
noncoding100C100ACA11B.1.360.000146
noncoding100C100GCG11B.1.36.160.001425
noncoding100C100-C-11B.1.36.170.000494
noncoding100C100TCT11B.1.3610.001289
noncoding100C100TCT11B.1.3690.000285
noncoding100C100ACA11B.1.3710.001122
noncoding100C100ACA11B.1.3780.006849
noncoding100C100ACA11B.1.3870.04
noncoding100C100-C-11B.1.4160.001269
noncoding100C100ACA11B.1.4240.008065
noncoding100C100-C-11B.1.4290.000024
noncoding100C100TCT11B.1.4970.000315
noncoding100C100TCT11B.1.4990.00105
noncoding100C100TCT11B.1.5170.000427
noncoding100C100-C-11B.1.5250.000113
noncoding100C100TCT11B.1.5330.009615
noncoding100C100TCT11B.1.5510.00129
noncoding100C100TCT11B.1.5760.000907
noncoding100C100TCT11B.1.5880.00091
noncoding100C100TCT11B.1.595.40.007299
noncoding100C100ACA11B.1.6090.000479
noncoding100C100TCT11B.1.6090.000479
noncoding100C100-C-11B.1.617.10.000129
noncoding100C100GCG11B.1.617.20.000004
noncoding100C100ACA11B.1.617.20.000004
noncoding100C100TCT11B.1.6180.004032
noncoding100C100TCT11B.1.6210.000089
noncoding100C100ACA11B.1.6230.000536
noncoding100C100TCT11B.1.6280.000352
noncoding100C100ACA11B.1.6300.005236
noncoding100C100ACA11B.390.002331
noncoding100C100GCG11B.40.002208
noncoding100C100ACA11B.40.002208
noncoding100C100ACA11B.6.60.000889
noncoding100C100TCT11C.2.10.006667
noncoding100C100TCT11C.230.005814
noncoding100C100TCT11C.300.001727
noncoding100C100TCT11C.350.000774
noncoding100C100-C-11C.350.000774
noncoding100C100-C-11N.40.004255
noncoding100C100GCG11P.10.000016
noncoding100C100-C-11P.1.130.000898
noncoding100C100TCT11P.1.150.000232
noncoding100C100TCT11P.1.20.001156
noncoding100C100TCT11Q.40.000455