CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = Y873Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S873Y873YsyntaCtaT30993099124179-24181

Details of the mutation Y873Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S873Y873YtaCtaT30993099All0.000593
S873Y873YtaCtaT15721572B.1.438.10.168615
S873Y873YtaCtaT733733AY.40.001141
S873Y873YtaCtaT139139AY.30.001383
S873Y873YtaCtaT7070B.1.1.70.000063
S873Y873YtaCtaT6666B.1.5790.741573
S873Y873YtaCtaT5353B.10.000485
S873Y873YtaCtaT3636B.1.20.000317
S873Y873YtaCtaT3030AY.9.10.002512
S873Y873YtaCtaT2828B.1.6260.16
S873Y873YtaCtaT2626AY.430.000115
S873Y873YtaCtaT2424AY.250.000144
S873Y873YtaCtaT2323B.1.617.20.000087
S873Y873YtaCtaT2222AY.390.000544
S873Y873YtaCtaT1717B.1.2320.009135
S873Y873YtaCtaT1414AY.200.000544
S873Y873YtaCtaT1313B.1.1.5190.000516
S873Y873YtaCtaT1212AY.1030.000075
S873Y873YtaCtaT1212B.1.4290.000282
S873Y873YtaCtaT1111AY.440.000067
S873Y873YtaCtaT1111B.1.10.0002
S873Y873YtaCtaT1111B.1.1.10.003594
S873Y873YtaCtaT99B.1.2580.000599
S873Y873YtaCtaT88AY.1170.000676
S873Y873YtaCtaT77B.1.1770.000092
S873Y873YtaCtaT77B.1.6340.023973
S873Y873YtaCtaT66AY.160.002278
S873Y873YtaCtaT66AY.3.10.000512
S873Y873YtaCtaT55AY.260.000142
S873Y873YtaCtaT55AY.290.000079
S873Y873YtaCtaT55AY.50.000103
S873Y873YtaCtaT55B.1.2210.000355
S873Y873YtaCtaT55P.10.000079
S873Y873YtaCtaT55R.10.00045
S873Y873YtaCtaT44AY.46.40.000658
S873Y873YtaCtaT44AY.530.00115
S873Y873YtaCtaT44AY.7.10.000451
S873Y873YtaCtaT44B.1.360.000584
S873Y873YtaCtaT33AY.1020.00008
S873Y873YtaCtaT33AY.230.000209
S873Y873YtaCtaT33AY.340.000291
S873Y873YtaCtaT33AY.420.000121
S873Y873YtaCtaT33AY.60.000123
S873Y873YtaCtaT33B.1.1.250.001706
S873Y873YtaCtaT22A.10.000564
S873Y873YtaCtaT22AY.46.60.000144
S873Y873YtaCtaT22AY.470.000062
S873Y873YtaCtaT22AY.610.00021
S873Y873YtaCtaT22AY.750.000112
S873Y873YtaCtaT22AY.850.000854
S873Y873YtaCtaT22B.1.1.3170.000823
S873Y873YtaCtaT22B.1.1600.000062
S873Y873YtaCtaT22B.1.177.410.005
S873Y873YtaCtaT22B.1.2360.004107
S873Y873YtaCtaT22B.1.6210.000177
S873Y873YtaCtaT22B.1.6280.000705
S873Y873YtaCtaT11A.2.50.000499
S873Y873YtaCtaT11A.2.5.30.010309
S873Y873YtaCtaT11A.50.001923
S873Y873YtaCtaT11AY.1000.000046
S873Y873YtaCtaT11AY.1070.000466
S873Y873YtaCtaT11AY.1180.000063
S873Y873YtaCtaT11AY.120.000316
S873Y873YtaCtaT11AY.1210.000135
S873Y873YtaCtaT11AY.270.000065
S873Y873YtaCtaT11AY.320.000532
S873Y873YtaCtaT11AY.330.000067
S873Y873YtaCtaT11AY.4.2.10.000149
S873Y873YtaCtaT11AY.4.40.000409
S873Y873YtaCtaT11AY.4.50.000107
S873Y873YtaCtaT11AY.410.000294
S873Y873YtaCtaT11AY.450.000122
S873Y873YtaCtaT11AY.510.000909
S873Y873YtaCtaT11AY.550.000917
S873Y873YtaCtaT11AY.580.000907
S873Y873YtaCtaT11AY.650.000533
S873Y873YtaCtaT11AY.760.004831
S873Y873YtaCtaT11AY.790.001211
S873Y873YtaCtaT11AY.930.000273
S873Y873YtaCtaT11AY.940.000443
S873Y873YtaCtaT11B.1.1.2580.003257
S873Y873YtaCtaT11B.1.1.280.000311
S873Y873YtaCtaT11B.1.1.3260.001761
S873Y873YtaCtaT11B.1.1.370.000193
S873Y873YtaCtaT11B.1.1.3740.002375
S873Y873YtaCtaT11B.1.160.70.002079
S873Y873YtaCtaT11B.1.177.440.000519
S873Y873YtaCtaT11B.1.177.600.000218
S873Y873YtaCtaT11B.1.177.870.000728
S873Y873YtaCtaT11B.1.214.20.0006
S873Y873YtaCtaT11B.1.3910.001127
S873Y873YtaCtaT11B.1.4360.001029
S873Y873YtaCtaT11B.1.5260.000024
S873Y873YtaCtaT11B.1.5650.00081
S873Y873YtaCtaT11B.1.5950.000261
S873Y873YtaCtaT11B.1.617.10.000129
S873Y873YtaCtaT11B.1.6180.004032
S873Y873YtaCtaT11C.360.000911
S873Y873YtaCtaT11D.50.004975
S873Y873YtaCtaT11P.1.170.000162
S873Y873YtaCtaT11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.