CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = Y145del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S145Y145deldelTAC---30743074121995-21997

Details of the mutation Y145del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S145Y145delTAC---30743074All0.000588
S145Y145delTAC---20942094B.1.1.70.001875
S145Y145delTAC---201201B.1.6180.810484
S145Y145delTAC---189189B.1.6370.013811
S145Y145delTAC---9393AY.40.000145
S145Y145delTAC---4646AY.430.000204
S145Y145delTAC---3232Q.80.005277
S145Y145delTAC---2323AY.250.000138
S145Y145delTAC---2323B.10.000211
S145Y145delTAC---2020B.1.20.000176
S145Y145delTAC---1919B.1.5260.000447
S145Y145delTAC---1616AY.4.20.000347
S145Y145delTAC---1515P.10.000236
S145Y145delTAC---1414B.1.5820.006869
S145Y145delTAC---1212AY.1020.000318
S145Y145delTAC---1212B.1.617.20.000045
S145Y145delTAC---1111B.1.1770.000145
S145Y145delTAC---1010AY.420.000402
S145Y145delTAC---99AY.440.000055
S145Y145delTAC---99B.1.10.000163
S145Y145delTAC---88B.1.1600.00025
S145Y145delTAC---88B.1.6300.041885
S145Y145delTAC---77AY.30.00007
S145Y145delTAC---66AY.290.000095
S145Y145delTAC---66B.1.1.3180.001811
S145Y145delTAC---66B.1.3510.000178
S145Y145delTAC---55AY.390.000124
S145Y145delTAC---55AY.4.2.10.000745
S145Y145delTAC---44A.2.50.001996
S145Y145delTAC---44AY.1030.000025
S145Y145delTAC---44AY.34.10.00204
S145Y145delTAC---44AZ.20.003284
S145Y145delTAC---44B.1.177.210.000306
S145Y145delTAC---44B.1.2430.000278
S145Y145delTAC---33AY.1200.000112
S145Y145delTAC---33AY.1210.000406
S145Y145delTAC---33B.1.1.2840.000322
S145Y145delTAC---33B.1.3190.009146
S145Y145delTAC---33B.1.360.000438
S145Y145delTAC---33B.1.5960.000261
S145Y145delTAC---33B.1.6210.000266
S145Y145delTAC---22A.270.003311
S145Y145delTAC---22AY.1000.000092
S145Y145delTAC---22AY.1010.000981
S145Y145delTAC---22AY.1080.002205
S145Y145delTAC---22AY.1190.000071
S145Y145delTAC---22AY.270.000129
S145Y145delTAC---22AY.29.10.000441
S145Y145delTAC---22AY.330.000134
S145Y145delTAC---22AY.4.50.000215
S145Y145delTAC---22AY.650.001066
S145Y145delTAC---22AY.7.20.001119
S145Y145delTAC---22AY.840.000875
S145Y145delTAC---22AY.90.000135
S145Y145delTAC---22AY.98.10.000097
S145Y145delTAC---22AY.990.002099
S145Y145delTAC---22AZ.50.007018
S145Y145delTAC---22B.1.1.2980.001724
S145Y145delTAC---22B.1.1.3110.000716
S145Y145delTAC---22B.1.177.870.001456
S145Y145delTAC---22B.1.2210.000142
S145Y145delTAC---22B.1.2340.000264
S145Y145delTAC---22B.1.258.170.000208
S145Y145delTAC---22B.1.36.380.003284
S145Y145delTAC---22B.1.390.007812
S145Y145delTAC---22B.1.5250.000226
S145Y145delTAC---22B.1.5950.000522
S145Y145delTAC---22B.1.617.10.000258
S145Y145delTAC---22B.1.6200.001892
S145Y145delTAC---22C.370.000232
S145Y145delTAC---22P.1.110.020408
S145Y145delTAC---22P.1.150.000465
S145Y145delTAC---22P.30.00319
S145Y145delTAC---22Q.20.001227
S145Y145delTAC---22Q.30.00029
S145Y145delTAC---11A0.000387
S145Y145delTAC---11A.10.000282
S145Y145delTAC---11A.190.009434
S145Y145delTAC---11AY.1070.000466
S145Y145delTAC---11AY.1090.00074
S145Y145delTAC---11AY.1160.000287
S145Y145delTAC---11AY.1170.000085
S145Y145delTAC---11AY.1180.000063
S145Y145delTAC---11AY.120.20.001285
S145Y145delTAC---11AY.140.000088
S145Y145delTAC---11AY.360.000148
S145Y145delTAC---11AY.4.10.000737
S145Y145delTAC---11AY.460.000104
S145Y145delTAC---11AY.50.000021
S145Y145delTAC---11AY.5.30.000337
S145Y145delTAC---11AY.600.000938
S145Y145delTAC---11AY.620.000436
S145Y145delTAC---11AY.730.000665
S145Y145delTAC---11AY.780.001541
S145Y145delTAC---11AY.850.000427
S145Y145delTAC---11AY.9.20.000037
S145Y145delTAC---11AY.920.000287
S145Y145delTAC---11AY.99.10.001553
S145Y145delTAC---11B.1.1.1390.022727
S145Y145delTAC---11B.1.1.390.00051
S145Y145delTAC---11B.1.1.410.006329
S145Y145delTAC---11B.1.1.4320.001266
S145Y145delTAC---11B.1.1.4470.035714
S145Y145delTAC---11B.1.1.630.000386
S145Y145delTAC---11B.1.1390.000733
S145Y145delTAC---11B.1.160.230.004831
S145Y145delTAC---11B.1.160.300.002976
S145Y145delTAC---11B.1.177.40.000211
S145Y145delTAC---11B.1.177.570.000281
S145Y145delTAC---11B.1.177.60.000977
S145Y145delTAC---11B.1.177.730.000566
S145Y145delTAC---11B.1.177.760.002494
S145Y145delTAC---11B.1.177.860.000183
S145Y145delTAC---11B.1.2790.000514
S145Y145delTAC---11B.1.36.310.001751
S145Y145delTAC---11B.1.370.014706
S145Y145delTAC---11B.1.3800.006623
S145Y145delTAC---11B.1.3910.001127
S145Y145delTAC---11B.1.4150.014286
S145Y145delTAC---11B.1.4160.001269
S145Y145delTAC---11B.1.4270.00005
S145Y145delTAC---11B.1.4290.000024
S145Y145delTAC---11B.1.466.10.007194
S145Y145delTAC---11B.1.5650.00081
S145Y145delTAC---11B.1.5680.001111
S145Y145delTAC---11B.1.5850.027778
S145Y145delTAC---11B.1.596.10.009346
S145Y145delTAC---11B.1.6120.002653
S145Y145delTAC---11B.1.9.40.006135
S145Y145delTAC---11B.1.930.000934
S145Y145delTAC---11C.360.000911
S145Y145delTAC---11P.1.10.000318
S145Y145delTAC---11P.1.170.000162
S145Y145delTAC---11P.1.20.001156
S145Y145delTAC---11P.20.000187
S145Y145delTAC---11Q.10.000126
S145Y145delTAC---11Q.70.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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