CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 64 | W64R | nonsyn | Tgg | Agg | 1238 | 903 | 0.729402 | 21752-21754 | |
S | 64 | W64R | nonsyn | Tgg | Cgg | 1238 | 334 | 0.26979 | 21752-21754 | |
S | 64 | W64R | nonsyn | TgG | AgA | 1238 | 1 | 0.000807754 | 21752-21754 |
Details of the mutation W64R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 64 | W64R | Tgg | Agg | 903 | 1238 | All | 0.000173 |
S | 64 | W64R | Tgg | Cgg | 334 | 1238 | All | 0.000064 |
S | 64 | W64R | TgG | AgA | 1 | 1238 | All | 0 |
S | 64 | W64R | Tgg | Agg | 399 | 399 | B.1.627 | 0.806061 |
S | 64 | W64R | Tgg | Cgg | 211 | 352 | B.1.1.7 | 0.000189 |
S | 64 | W64R | Tgg | Agg | 141 | 352 | B.1.1.7 | 0.000126 |
S | 64 | W64R | Tgg | Agg | 109 | 109 | C.38 | 0.879032 |
S | 64 | W64R | Tgg | Agg | 56 | 56 | P.3 | 0.089314 |
S | 64 | W64R | Tgg | Agg | 31 | 31 | B.1.596 | 0.002701 |
S | 64 | W64R | Tgg | Cgg | 25 | 30 | B.1.2 | 0.00022 |
S | 64 | W64R | Tgg | Agg | 5 | 30 | B.1.2 | 0.000044 |
S | 64 | W64R | Tgg | Agg | 23 | 27 | B.1.617.2 | 0.000087 |
S | 64 | W64R | Tgg | Cgg | 4 | 27 | B.1.617.2 | 0.000015 |
S | 64 | W64R | Tgg | Agg | 12 | 24 | B.1 | 0.00011 |
S | 64 | W64R | Tgg | Cgg | 12 | 24 | B.1 | 0.00011 |
S | 64 | W64R | Tgg | Cgg | 12 | 14 | B.1.638 | 0.631579 |
S | 64 | W64R | Tgg | Agg | 2 | 14 | B.1.638 | 0.105263 |
S | 64 | W64R | Tgg | Agg | 13 | 13 | AY.33 | 0.000868 |
S | 64 | W64R | Tgg | Cgg | 11 | 11 | AY.26 | 0.000311 |
S | 64 | W64R | Tgg | Agg | 10 | 10 | B | 0.001278 |
S | 64 | W64R | Tgg | Cgg | 5 | 9 | AY.43 | 0.000022 |
S | 64 | W64R | Tgg | Agg | 4 | 9 | AY.43 | 0.000018 |
S | 64 | W64R | Tgg | Cgg | 4 | 7 | AY.3 | 0.00004 |
S | 64 | W64R | Tgg | Agg | 3 | 7 | AY.3 | 0.00003 |
S | 64 | W64R | Tgg | Agg | 7 | 7 | Q.1 | 0.000884 |
S | 64 | W64R | Tgg | Cgg | 5 | 6 | AY.103 | 0.000031 |
S | 64 | W64R | Tgg | Agg | 1 | 6 | AY.103 | 0.000006 |
S | 64 | W64R | Tgg | Cgg | 3 | 6 | AY.44 | 0.000018 |
S | 64 | W64R | Tgg | Agg | 3 | 6 | AY.44 | 0.000018 |
S | 64 | W64R | Tgg | Agg | 5 | 5 | AY.14 | 0.00044 |
S | 64 | W64R | Tgg | Agg | 3 | 5 | AY.4 | 0.000005 |
S | 64 | W64R | Tgg | Cgg | 2 | 5 | AY.4 | 0.000003 |
S | 64 | W64R | Tgg | Cgg | 4 | 4 | AB.1 | 0.032787 |
S | 64 | W64R | Tgg | Cgg | 3 | 4 | AY.102 | 0.00008 |
S | 64 | W64R | Tgg | Agg | 1 | 4 | AY.102 | 0.000027 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | AY.30 | 0.001583 |
S | 64 | W64R | Tgg | Cgg | 2 | 4 | AY.69 | 0.000373 |
S | 64 | W64R | Tgg | Agg | 1 | 4 | AY.69 | 0.000187 |
S | 64 | W64R | TgG | AgA | 1 | 4 | AY.69 | 0.000187 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | B.1.177 | 0.000053 |
S | 64 | W64R | Tgg | Agg | 4 | 4 | P.1 | 0.000063 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.106 | 0.001005 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | AY.39 | 0.000049 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | AY.39 | 0.000025 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.61 | 0.000314 |
S | 64 | W64R | Tgg | Agg | 3 | 3 | AY.75.1 | 0.000541 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | B.1.526 | 0.000047 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | B.1.526 | 0.000024 |
S | 64 | W64R | Tgg | Agg | 2 | 3 | C.37 | 0.000232 |
S | 64 | W64R | Tgg | Cgg | 1 | 3 | C.37 | 0.000116 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | AY.118 | 0.000125 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | AY.119 | 0.000035 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | AY.119 | 0.000035 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | AY.25 | 0.000012 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | AY.45 | 0.000122 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | AY.45 | 0.000122 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1 | 0.000036 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1.133 | 0.016949 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.1.519 | 0.000079 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.243 | 0.000139 |
S | 64 | W64R | Tgg | Cgg | 2 | 2 | B.1.258 | 0.000133 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.329 | 0.001215 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.427 | 0.000101 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | B.1.555 | 0.044444 |
S | 64 | W64R | Tgg | Agg | 1 | 2 | B.1.621 | 0.000089 |
S | 64 | W64R | Tgg | Cgg | 1 | 2 | B.1.621 | 0.000089 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | C.36.3 | 0.001134 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | C.36.3.1 | 0.005435 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | D.2 | 0.00015 |
S | 64 | W64R | Tgg | Agg | 2 | 2 | P.2 | 0.000373 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | A | 0.000387 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.1 | 0.000396 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.113 | 0.000142 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.120 | 0.000037 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.13 | 0.000161 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.16.1 | 0.00047 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.23 | 0.00007 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.29 | 0.000016 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.4.2 | 0.000022 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.4.5 | 0.000107 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.42 | 0.00004 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.47 | 0.000031 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.5 | 0.000021 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.60 | 0.000938 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.65 | 0.000533 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | AY.7.1 | 0.000113 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.75 | 0.000056 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | AY.85 | 0.000427 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.153 | 0.001095 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.222 | 0.000204 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.28 | 0.000311 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.306 | 0.000438 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.318 | 0.000302 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.1.33 | 0.000421 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.1.448 | 0.002033 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.160.15 | 0.00495 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.177.33 | 0.001645 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.177.73 | 0.000566 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.221 | 0.000071 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.241 | 0.000812 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.351 | 0.00003 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.356 | 0.001727 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.36 | 0.000146 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.369 | 0.000285 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.429 | 0.000024 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.431 | 0.04 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.466.2 | 0.000391 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.525 | 0.000113 |
S | 64 | W64R | Tgg | Cgg | 1 | 1 | B.1.582 | 0.000491 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.1.617.1 | 0.000129 |
S | 64 | W64R | Tgg | Agg | 1 | 1 | B.55 | 0.00295 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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