CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = W64R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S64W64RnonsynTggAgg12389030.72940221752-21754
S64W64RnonsynTggCgg12383340.2697921752-21754
S64W64RnonsynTgGAgA123810.00080775421752-21754

Details of the mutation W64R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S64W64RTggAgg9031238All0.000173
S64W64RTggCgg3341238All0.000064
S64W64RTgGAgA11238All0
S64W64RTggAgg399399B.1.6270.806061
S64W64RTggCgg211352B.1.1.70.000189
S64W64RTggAgg141352B.1.1.70.000126
S64W64RTggAgg109109C.380.879032
S64W64RTggAgg5656P.30.089314
S64W64RTggAgg3131B.1.5960.002701
S64W64RTggCgg2530B.1.20.00022
S64W64RTggAgg530B.1.20.000044
S64W64RTggAgg2327B.1.617.20.000087
S64W64RTggCgg427B.1.617.20.000015
S64W64RTggAgg1224B.10.00011
S64W64RTggCgg1224B.10.00011
S64W64RTggCgg1214B.1.6380.631579
S64W64RTggAgg214B.1.6380.105263
S64W64RTggAgg1313AY.330.000868
S64W64RTggCgg1111AY.260.000311
S64W64RTggAgg1010B0.001278
S64W64RTggCgg59AY.430.000022
S64W64RTggAgg49AY.430.000018
S64W64RTggCgg47AY.30.00004
S64W64RTggAgg37AY.30.00003
S64W64RTggAgg77Q.10.000884
S64W64RTggCgg56AY.1030.000031
S64W64RTggAgg16AY.1030.000006
S64W64RTggCgg36AY.440.000018
S64W64RTggAgg36AY.440.000018
S64W64RTggAgg55AY.140.00044
S64W64RTggAgg35AY.40.000005
S64W64RTggCgg25AY.40.000003
S64W64RTggCgg44AB.10.032787
S64W64RTggCgg34AY.1020.00008
S64W64RTggAgg14AY.1020.000027
S64W64RTggAgg44AY.300.001583
S64W64RTggCgg24AY.690.000373
S64W64RTggAgg14AY.690.000187
S64W64RTgGAgA14AY.690.000187
S64W64RTggAgg44B.1.1770.000053
S64W64RTggAgg44P.10.000063
S64W64RTggAgg33AY.1060.001005
S64W64RTggAgg23AY.390.000049
S64W64RTggCgg13AY.390.000025
S64W64RTggAgg33AY.610.000314
S64W64RTggAgg33AY.75.10.000541
S64W64RTggAgg23B.1.5260.000047
S64W64RTggCgg13B.1.5260.000024
S64W64RTggAgg23C.370.000232
S64W64RTggCgg13C.370.000116
S64W64RTggCgg22AY.1180.000125
S64W64RTggAgg12AY.1190.000035
S64W64RTggCgg12AY.1190.000035
S64W64RTggCgg22AY.250.000012
S64W64RTggCgg12AY.450.000122
S64W64RTggAgg12AY.450.000122
S64W64RTggCgg22B.1.10.000036
S64W64RTggCgg22B.1.1.1330.016949
S64W64RTggCgg22B.1.1.5190.000079
S64W64RTggAgg22B.1.2430.000139
S64W64RTggCgg22B.1.2580.000133
S64W64RTggAgg22B.1.3290.001215
S64W64RTggAgg22B.1.4270.000101
S64W64RTggAgg22B.1.5550.044444
S64W64RTggAgg12B.1.6210.000089
S64W64RTggCgg12B.1.6210.000089
S64W64RTggAgg22C.36.30.001134
S64W64RTggAgg22C.36.3.10.005435
S64W64RTggAgg22D.20.00015
S64W64RTggAgg22P.20.000373
S64W64RTggAgg11A0.000387
S64W64RTggAgg11AY.10.000396
S64W64RTggAgg11AY.1130.000142
S64W64RTggAgg11AY.1200.000037
S64W64RTggAgg11AY.130.000161
S64W64RTggAgg11AY.16.10.00047
S64W64RTggCgg11AY.230.00007
S64W64RTggAgg11AY.290.000016
S64W64RTggAgg11AY.4.20.000022
S64W64RTggAgg11AY.4.50.000107
S64W64RTggCgg11AY.420.00004
S64W64RTggAgg11AY.470.000031
S64W64RTggAgg11AY.50.000021
S64W64RTggAgg11AY.600.000938
S64W64RTggAgg11AY.650.000533
S64W64RTggCgg11AY.7.10.000113
S64W64RTggAgg11AY.750.000056
S64W64RTggAgg11AY.850.000427
S64W64RTggAgg11B.1.1.1530.001095
S64W64RTggCgg11B.1.1.2220.000204
S64W64RTggAgg11B.1.1.280.000311
S64W64RTggCgg11B.1.1.3060.000438
S64W64RTggCgg11B.1.1.3180.000302
S64W64RTggAgg11B.1.1.330.000421
S64W64RTggCgg11B.1.1.4480.002033
S64W64RTggAgg11B.1.160.150.00495
S64W64RTggAgg11B.1.177.330.001645
S64W64RTggAgg11B.1.177.730.000566
S64W64RTggCgg11B.1.2210.000071
S64W64RTggCgg11B.1.2410.000812
S64W64RTggAgg11B.1.3510.00003
S64W64RTggAgg11B.1.3560.001727
S64W64RTggAgg11B.1.360.000146
S64W64RTggCgg11B.1.3690.000285
S64W64RTggCgg11B.1.4290.000024
S64W64RTggCgg11B.1.4310.04
S64W64RTggAgg11B.1.466.20.000391
S64W64RTggAgg11B.1.5250.000113
S64W64RTggCgg11B.1.5820.000491
S64W64RTggAgg11B.1.617.10.000129
S64W64RTggAgg11B.550.00295

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.