CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 83 | V83V | syn | gtC | gtT | 14671 | 7872 | 0.536569 | 21809-21811 | |
S | 83 | V83V | syn | gtC | gtA | 14671 | 6652 | 0.453411 | 21809-21811 | |
S | 83 | V83V | syn | gtC | gtG | 14671 | 147 | 0.0100198 | 21809-21811 |
Details of the mutation V83V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 83 | V83V | gtC | gtT | 7872 | 14671 | All | 0.001506 |
S | 83 | V83V | gtC | gtA | 6652 | 14671 | All | 0.001272 |
S | 83 | V83V | gtC | gtG | 147 | 14671 | All | 0.000028 |
S | 83 | V83V | gtC | gtA | 5164 | 5172 | B.1.596 | 0.449983 |
S | 83 | V83V | gtC | gtT | 8 | 5172 | B.1.596 | 0.000697 |
S | 83 | V83V | gtC | gtT | 2665 | 2680 | AY.4 | 0.004148 |
S | 83 | V83V | gtC | gtA | 14 | 2680 | AY.4 | 0.000022 |
S | 83 | V83V | gtC | gtG | 1 | 2680 | AY.4 | 0.000002 |
S | 83 | V83V | gtC | gtT | 752 | 1210 | B.1.2 | 0.006622 |
S | 83 | V83V | gtC | gtA | 458 | 1210 | B.1.2 | 0.004033 |
S | 83 | V83V | gtC | gtT | 1056 | 1068 | B.1.1.7 | 0.000945 |
S | 83 | V83V | gtC | gtA | 9 | 1068 | B.1.1.7 | 0.000008 |
S | 83 | V83V | gtC | gtG | 3 | 1068 | B.1.1.7 | 0.000003 |
S | 83 | V83V | gtC | gtT | 431 | 576 | B.1.617.2 | 0.001623 |
S | 83 | V83V | gtC | gtA | 81 | 576 | B.1.617.2 | 0.000305 |
S | 83 | V83V | gtC | gtG | 64 | 576 | B.1.617.2 | 0.000241 |
S | 83 | V83V | gtC | gtT | 174 | 294 | AY.44 | 0.001059 |
S | 83 | V83V | gtC | gtA | 120 | 294 | AY.44 | 0.00073 |
S | 83 | V83V | gtC | gtA | 126 | 226 | B.1 | 0.001154 |
S | 83 | V83V | gtC | gtT | 96 | 226 | B.1 | 0.000879 |
S | 83 | V83V | gtC | gtG | 4 | 226 | B.1 | 0.000037 |
S | 83 | V83V | gtC | gtT | 78 | 179 | AY.25 | 0.000469 |
S | 83 | V83V | gtC | gtA | 77 | 179 | AY.25 | 0.000463 |
S | 83 | V83V | gtC | gtG | 24 | 179 | AY.25 | 0.000144 |
S | 83 | V83V | gtC | gtT | 127 | 134 | AY.54 | 0.012109 |
S | 83 | V83V | gtC | gtA | 7 | 134 | AY.54 | 0.000667 |
S | 83 | V83V | gtC | gtT | 120 | 131 | B.1.1 | 0.002177 |
S | 83 | V83V | gtC | gtA | 11 | 131 | B.1.1 | 0.0002 |
S | 83 | V83V | gtC | gtT | 123 | 123 | AY.33 | 0.008214 |
S | 83 | V83V | gtC | gtT | 90 | 121 | AY.39 | 0.002224 |
S | 83 | V83V | gtC | gtA | 31 | 121 | AY.39 | 0.000766 |
S | 83 | V83V | gtC | gtT | 97 | 117 | AY.43 | 0.00043 |
S | 83 | V83V | gtC | gtA | 18 | 117 | AY.43 | 0.00008 |
S | 83 | V83V | gtC | gtG | 2 | 117 | AY.43 | 0.000009 |
S | 83 | V83V | gtC | gtA | 71 | 112 | AY.103 | 0.000441 |
S | 83 | V83V | gtC | gtT | 41 | 112 | AY.103 | 0.000255 |
S | 83 | V83V | gtC | gtT | 81 | 110 | AY.3 | 0.000806 |
S | 83 | V83V | gtC | gtA | 29 | 110 | AY.3 | 0.000288 |
S | 83 | V83V | gtC | gtT | 101 | 101 | B.1.1.251 | 0.801587 |
S | 83 | V83V | gtC | gtT | 100 | 100 | B.1.177.27 | 0.943396 |
S | 83 | V83V | gtC | gtT | 98 | 98 | P.1 | 0.001544 |
S | 83 | V83V | gtC | gtT | 88 | 92 | AY.9.2 | 0.003232 |
S | 83 | V83V | gtC | gtA | 4 | 92 | AY.9.2 | 0.000147 |
S | 83 | V83V | gtC | gtA | 88 | 90 | B.1.369 | 0.0251 |
S | 83 | V83V | gtC | gtT | 1 | 90 | B.1.369 | 0.000285 |
S | 83 | V83V | gtC | gtG | 1 | 90 | B.1.369 | 0.000285 |
S | 83 | V83V | gtC | gtT | 83 | 83 | B.1.1.487 | 0.463687 |
S | 83 | V83V | gtC | gtA | 79 | 81 | AY.113 | 0.011249 |
S | 83 | V83V | gtC | gtT | 2 | 81 | AY.113 | 0.000285 |
S | 83 | V83V | gtC | gtG | 33 | 78 | AY.100 | 0.001518 |
S | 83 | V83V | gtC | gtT | 24 | 78 | AY.100 | 0.001104 |
S | 83 | V83V | gtC | gtA | 21 | 78 | AY.100 | 0.000966 |
S | 83 | V83V | gtC | gtT | 60 | 66 | AY.102 | 0.001591 |
S | 83 | V83V | gtC | gtA | 6 | 66 | AY.102 | 0.000159 |
S | 83 | V83V | gtC | gtT | 52 | 58 | AY.92 | 0.014938 |
S | 83 | V83V | gtC | gtA | 6 | 58 | AY.92 | 0.001724 |
S | 83 | V83V | gtC | gtT | 56 | 57 | B.1.177 | 0.000737 |
S | 83 | V83V | gtC | gtA | 1 | 57 | B.1.177 | 0.000013 |
S | 83 | V83V | gtC | gtT | 38 | 54 | B.1.429 | 0.000894 |
S | 83 | V83V | gtC | gtA | 15 | 54 | B.1.429 | 0.000353 |
S | 83 | V83V | gtC | gtG | 1 | 54 | B.1.429 | 0.000024 |
S | 83 | V83V | gtC | gtT | 43 | 44 | B.1.1.519 | 0.001708 |
S | 83 | V83V | gtC | gtA | 1 | 44 | B.1.1.519 | 0.00004 |
S | 83 | V83V | gtC | gtT | 43 | 43 | B.1.177.12 | 0.006523 |
S | 83 | V83V | gtC | gtT | 40 | 41 | B.1.637 | 0.002923 |
S | 83 | V83V | gtC | gtA | 1 | 41 | B.1.637 | 0.000073 |
S | 83 | V83V | gtC | gtT | 38 | 38 | AY.98.1 | 0.00184 |
S | 83 | V83V | gtC | gtT | 37 | 38 | B.1.351 | 0.0011 |
S | 83 | V83V | gtC | gtA | 1 | 38 | B.1.351 | 0.00003 |
S | 83 | V83V | gtC | gtT | 35 | 35 | B.1.243 | 0.002435 |
S | 83 | V83V | gtC | gtT | 33 | 33 | B.1.177.85 | 0.179348 |
S | 83 | V83V | gtC | gtA | 22 | 32 | AY.5 | 0.000454 |
S | 83 | V83V | gtC | gtT | 10 | 32 | AY.5 | 0.000206 |
S | 83 | V83V | gtC | gtT | 26 | 31 | AY.13 | 0.004185 |
S | 83 | V83V | gtC | gtA | 5 | 31 | AY.13 | 0.000805 |
S | 83 | V83V | gtC | gtA | 19 | 28 | B.1.36.22 | 0.022947 |
S | 83 | V83V | gtC | gtT | 9 | 28 | B.1.36.22 | 0.01087 |
S | 83 | V83V | gtC | gtT | 17 | 27 | AY.119 | 0.0006 |
S | 83 | V83V | gtC | gtA | 10 | 27 | AY.119 | 0.000353 |
S | 83 | V83V | gtC | gtT | 25 | 27 | AY.42 | 0.001006 |
S | 83 | V83V | gtC | gtA | 2 | 27 | AY.42 | 0.00008 |
S | 83 | V83V | gtC | gtA | 16 | 24 | AY.26 | 0.000453 |
S | 83 | V83V | gtC | gtT | 8 | 24 | AY.26 | 0.000226 |
S | 83 | V83V | gtC | gtT | 22 | 24 | B.1.526 | 0.000517 |
S | 83 | V83V | gtC | gtA | 2 | 24 | B.1.526 | 0.000047 |
S | 83 | V83V | gtC | gtA | 18 | 23 | AY.14 | 0.001584 |
S | 83 | V83V | gtC | gtT | 5 | 23 | AY.14 | 0.00044 |
S | 83 | V83V | gtC | gtT | 14 | 23 | AY.20 | 0.000544 |
S | 83 | V83V | gtC | gtA | 9 | 23 | AY.20 | 0.00035 |
S | 83 | V83V | gtC | gtT | 22 | 22 | AY.46 | 0.00229 |
S | 83 | V83V | gtC | gtT | 17 | 22 | AY.47 | 0.000529 |
S | 83 | V83V | gtC | gtA | 5 | 22 | AY.47 | 0.000156 |
S | 83 | V83V | gtC | gtT | 19 | 19 | AY.98 | 0.001501 |
S | 83 | V83V | gtC | gtT | 9 | 18 | AY.23 | 0.000628 |
S | 83 | V83V | gtC | gtA | 9 | 18 | AY.23 | 0.000628 |
S | 83 | V83V | gtC | gtT | 18 | 18 | L.3 | 0.06383 |
S | 83 | V83V | gtC | gtT | 17 | 17 | B.1.177.42 | 0.015206 |
S | 83 | V83V | gtC | gtT | 11 | 16 | AY.1 | 0.004353 |
S | 83 | V83V | gtC | gtA | 5 | 16 | AY.1 | 0.001979 |
S | 83 | V83V | gtC | gtT | 15 | 16 | AY.108 | 0.016538 |
S | 83 | V83V | gtC | gtA | 1 | 16 | AY.108 | 0.001103 |
S | 83 | V83V | gtC | gtT | 16 | 16 | B.1.221 | 0.001137 |
S | 83 | V83V | gtC | gtA | 10 | 15 | AY.75 | 0.00056 |
S | 83 | V83V | gtC | gtT | 5 | 15 | AY.75 | 0.00028 |
S | 83 | V83V | gtC | gtT | 15 | 15 | B.1.1.333 | 0.016146 |
S | 83 | V83V | gtC | gtT | 14 | 14 | B.1.617.1 | 0.001806 |
S | 83 | V83V | gtC | gtT | 13 | 13 | B.1.1.63 | 0.005015 |
S | 83 | V83V | gtC | gtT | 13 | 13 | B.1.177.79 | 0.030445 |
S | 83 | V83V | gtC | gtT | 13 | 13 | B.1.621 | 0.001151 |
S | 83 | V83V | gtC | gtT | 11 | 13 | P.1.15 | 0.002556 |
S | 83 | V83V | gtC | gtG | 2 | 13 | P.1.15 | 0.000465 |
S | 83 | V83V | gtC | gtT | 13 | 13 | P.2 | 0.002426 |
S | 83 | V83V | gtC | gtT | 12 | 12 | AY.29 | 0.000189 |
S | 83 | V83V | gtC | gtT | 11 | 12 | AY.4.2 | 0.000239 |
S | 83 | V83V | gtC | gtA | 1 | 12 | AY.4.2 | 0.000022 |
S | 83 | V83V | gtC | gtT | 12 | 12 | AY.67 | 0.005571 |
S | 83 | V83V | gtC | gtT | 12 | 12 | B.1.1.50 | 0.008147 |
S | 83 | V83V | gtC | gtT | 11 | 11 | AY.32 | 0.005857 |
S | 83 | V83V | gtC | gtT | 11 | 11 | B.1.1.25 | 0.006254 |
S | 83 | V83V | gtC | gtT | 11 | 11 | B.1.1.51 | 0.0189 |
S | 83 | V83V | gtC | gtT | 11 | 11 | Q.8 | 0.001814 |
S | 83 | V83V | gtC | gtT | 6 | 10 | AY.45 | 0.00073 |
S | 83 | V83V | gtC | gtA | 4 | 10 | AY.45 | 0.000487 |
S | 83 | V83V | gtC | gtT | 8 | 10 | AY.48 | 0.003721 |
S | 83 | V83V | gtC | gtA | 2 | 10 | AY.48 | 0.00093 |
S | 83 | V83V | gtC | gtT | 10 | 10 | AY.79 | 0.012107 |
S | 83 | V83V | gtC | gtT | 10 | 10 | D.5 | 0.049751 |
S | 83 | V83V | gtC | gtA | 5 | 9 | AY.117 | 0.000423 |
S | 83 | V83V | gtC | gtT | 4 | 9 | AY.117 | 0.000338 |
S | 83 | V83V | gtC | gtT | 9 | 9 | AY.120 | 0.000335 |
S | 83 | V83V | gtC | gtT | 8 | 9 | AY.3.1 | 0.000682 |
S | 83 | V83V | gtC | gtA | 1 | 9 | AY.3.1 | 0.000085 |
S | 83 | V83V | gtC | gtT | 9 | 9 | AY.46.5 | 0.001786 |
S | 83 | V83V | gtC | gtT | 9 | 9 | AY.70 | 0.001877 |
S | 83 | V83V | gtC | gtT | 9 | 9 | B.1.1.39 | 0.004587 |
S | 83 | V83V | gtC | gtT | 9 | 9 | B.1.177.7 | 0.001484 |
S | 83 | V83V | gtC | gtT | 9 | 9 | B.1.22 | 0.011858 |
S | 83 | V83V | gtC | gtT | 8 | 8 | A | 0.003096 |
S | 83 | V83V | gtC | gtT | 8 | 8 | AY.116 | 0.002294 |
S | 83 | V83V | gtC | gtT | 7 | 8 | AY.121 | 0.000947 |
S | 83 | V83V | gtC | gtA | 1 | 8 | AY.121 | 0.000135 |
S | 83 | V83V | gtC | gtT | 8 | 8 | AY.9 | 0.000541 |
S | 83 | V83V | gtC | gtT | 8 | 8 | AY.9.1 | 0.00067 |
S | 83 | V83V | gtC | gtT | 8 | 8 | B.1.1.28 | 0.00249 |
S | 83 | V83V | gtC | gtT | 8 | 8 | B.1.1.33 | 0.003367 |
S | 83 | V83V | gtC | gtT | 7 | 8 | B.1.160 | 0.000218 |
S | 83 | V83V | gtC | gtA | 1 | 8 | B.1.160 | 0.000031 |
S | 83 | V83V | gtC | gtT | 6 | 8 | B.1.427 | 0.000303 |
S | 83 | V83V | gtC | gtA | 2 | 8 | B.1.427 | 0.000101 |
S | 83 | V83V | gtC | gtT | 8 | 8 | P.1.7 | 0.002554 |
S | 83 | V83V | gtC | gtT | 7 | 7 | AY.46.2 | 0.004447 |
S | 83 | V83V | gtC | gtT | 7 | 7 | B.1.561 | 0.002779 |
S | 83 | V83V | gtC | gtT | 7 | 7 | P.1.14 | 0.000335 |
S | 83 | V83V | gtC | gtT | 6 | 6 | AY.6 | 0.000247 |
S | 83 | V83V | gtC | gtA | 5 | 6 | AY.95 | 0.003805 |
S | 83 | V83V | gtC | gtT | 1 | 6 | AY.95 | 0.000761 |
S | 83 | V83V | gtC | gtT | 5 | 6 | B.1.234 | 0.00066 |
S | 83 | V83V | gtC | gtA | 1 | 6 | B.1.234 | 0.000132 |
S | 83 | V83V | gtC | gtT | 6 | 6 | B.1.239 | 0.007326 |
S | 83 | V83V | gtC | gtT | 6 | 6 | B.1.258.17 | 0.000624 |
S | 83 | V83V | gtC | gtT | 6 | 6 | B.1.351.2 | 0.001815 |
S | 83 | V83V | gtC | gtT | 6 | 6 | B.1.36 | 0.000875 |
S | 83 | V83V | gtC | gtT | 4 | 6 | B.1.466.2 | 0.001565 |
S | 83 | V83V | gtC | gtA | 2 | 6 | B.1.466.2 | 0.000782 |
S | 83 | V83V | gtC | gtT | 6 | 6 | Q.1 | 0.000758 |
S | 83 | V83V | gtC | gtG | 4 | 5 | AY.84 | 0.00175 |
S | 83 | V83V | gtC | gtA | 1 | 5 | AY.84 | 0.000437 |
S | 83 | V83V | gtC | gtT | 5 | 5 | B.1.1.214 | 0.000277 |
S | 83 | V83V | gtC | gtT | 5 | 5 | B.1.375 | 0.004098 |
S | 83 | V83V | gtC | gtT | 5 | 5 | B.1.628 | 0.001762 |
S | 83 | V83V | gtC | gtT | 5 | 5 | P.1.1 | 0.001588 |
S | 83 | V83V | gtC | gtT | 4 | 4 | AD.2 | 0.000876 |
S | 83 | V83V | gtC | gtT | 4 | 4 | AY.111 | 0.000733 |
S | 83 | V83V | gtC | gtT | 3 | 4 | AY.114 | 0.000693 |
S | 83 | V83V | gtC | gtA | 1 | 4 | AY.114 | 0.000231 |
S | 83 | V83V | gtC | gtA | 3 | 4 | AY.118 | 0.000188 |
S | 83 | V83V | gtC | gtT | 1 | 4 | AY.118 | 0.000063 |
S | 83 | V83V | gtC | gtT | 4 | 4 | AY.39.1 | 0.000158 |
S | 83 | V83V | gtC | gtT | 4 | 4 | AY.4.5 | 0.00043 |
S | 83 | V83V | gtC | gtT | 3 | 4 | AY.46.6 | 0.000217 |
S | 83 | V83V | gtC | gtA | 1 | 4 | AY.46.6 | 0.000072 |
S | 83 | V83V | gtC | gtA | 4 | 4 | AY.75.1 | 0.000721 |
S | 83 | V83V | gtC | gtT | 2 | 4 | AY.99.2 | 0.000184 |
S | 83 | V83V | gtC | gtG | 2 | 4 | AY.99.2 | 0.000184 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.1.306 | 0.001754 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.160.26 | 0.009685 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.177.44 | 0.002076 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.177.60 | 0.000874 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.177.69 | 0.005935 |
S | 83 | V83V | gtC | gtA | 4 | 4 | B.1.580 | 0.01626 |
S | 83 | V83V | gtC | gtT | 4 | 4 | B.1.623 | 0.002146 |
S | 83 | V83V | gtC | gtT | 4 | 4 | P.1.12 | 0.001936 |
S | 83 | V83V | gtC | gtT | 3 | 3 | A.2.5.2 | 0.004717 |
S | 83 | V83V | gtC | gtT | 2 | 3 | AY.16.1 | 0.00094 |
S | 83 | V83V | gtC | gtA | 1 | 3 | AY.16.1 | 0.00047 |
S | 83 | V83V | gtC | gtT | 3 | 3 | AY.4.3 | 0.002525 |
S | 83 | V83V | gtC | gtT | 2 | 3 | AY.46.4 | 0.000329 |
S | 83 | V83V | gtC | gtA | 1 | 3 | AY.46.4 | 0.000165 |
S | 83 | V83V | gtC | gtA | 3 | 3 | AY.65 | 0.001599 |
S | 83 | V83V | gtC | gtG | 2 | 3 | AY.73 | 0.001331 |
S | 83 | V83V | gtC | gtA | 1 | 3 | AY.73 | 0.000665 |
S | 83 | V83V | gtC | gtT | 3 | 3 | AY.87 | 0.002498 |
S | 83 | V83V | gtC | gtA | 2 | 3 | AY.88 | 0.001768 |
S | 83 | V83V | gtC | gtT | 1 | 3 | AY.88 | 0.000884 |
S | 83 | V83V | gtC | gtA | 3 | 3 | AY.96 | 0.006224 |
S | 83 | V83V | gtC | gtT | 2 | 3 | B | 0.000256 |
S | 83 | V83V | gtC | gtA | 1 | 3 | B | 0.000128 |
S | 83 | V83V | gtC | gtT | 3 | 3 | B.1.1.176 | 0.001318 |
S | 83 | V83V | gtC | gtT | 3 | 3 | B.1.1.216 | 0.002671 |
S | 83 | V83V | gtC | gtG | 3 | 3 | B.1.163 | 0.073171 |
S | 83 | V83V | gtC | gtT | 3 | 3 | B.1.177.81 | 0.000568 |
S | 83 | V83V | gtC | gtT | 2 | 3 | B.1.595 | 0.000522 |
S | 83 | V83V | gtC | gtA | 1 | 3 | B.1.595 | 0.000261 |
S | 83 | V83V | gtC | gtT | 2 | 3 | B.6 | 0.00182 |
S | 83 | V83V | gtC | gtA | 1 | 3 | B.6 | 0.00091 |
S | 83 | V83V | gtC | gtT | 3 | 3 | C.35 | 0.002322 |
S | 83 | V83V | gtC | gtT | 2 | 3 | R.1 | 0.00018 |
S | 83 | V83V | gtC | gtA | 1 | 3 | R.1 | 0.00009 |
S | 83 | V83V | gtC | gtT | 2 | 2 | A.2.5.3 | 0.020619 |
S | 83 | V83V | gtC | gtT | 1 | 2 | AY.106 | 0.000335 |
S | 83 | V83V | gtC | gtA | 1 | 2 | AY.106 | 0.000335 |
S | 83 | V83V | gtC | gtA | 2 | 2 | AY.116.1 | 0.000623 |
S | 83 | V83V | gtC | gtA | 1 | 2 | AY.120.1 | 0.000321 |
S | 83 | V83V | gtC | gtT | 1 | 2 | AY.120.1 | 0.000321 |
S | 83 | V83V | gtC | gtT | 2 | 2 | AY.27 | 0.000129 |
S | 83 | V83V | gtC | gtA | 2 | 2 | AY.40 | 0.001929 |
S | 83 | V83V | gtC | gtA | 2 | 2 | AY.50 | 0.001599 |
S | 83 | V83V | gtC | gtA | 2 | 2 | AY.52 | 0.001629 |
S | 83 | V83V | gtC | gtT | 1 | 2 | AY.53 | 0.000288 |
S | 83 | V83V | gtC | gtA | 1 | 2 | AY.53 | 0.000288 |
S | 83 | V83V | gtC | gtT | 2 | 2 | AY.55 | 0.001835 |
S | 83 | V83V | gtC | gtT | 2 | 2 | AY.7 | 0.000392 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.1 | 0.000653 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.161 | 0.007067 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.263 | 0.003115 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.305 | 0.007722 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.318 | 0.000604 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.326 | 0.003521 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.37 | 0.000386 |
S | 83 | V83V | gtC | gtA | 2 | 2 | B.1.1.398 | 0.006452 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.1.71 | 0.012121 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.110 | 0.00905 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.177.4 | 0.000422 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.177.53 | 0.004785 |
S | 83 | V83V | gtC | gtA | 2 | 2 | B.1.177.73 | 0.001133 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.258 | 0.000133 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.265 | 0.002541 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.320 | 0.002491 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.36.8 | 0.002 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.396 | 0.001411 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.400 | 0.000858 |
S | 83 | V83V | gtC | gtA | 2 | 2 | B.1.469 | 0.00722 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.499 | 0.002101 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.525 | 0.000226 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.565 | 0.001621 |
S | 83 | V83V | gtC | gtT | 2 | 2 | B.1.575 | 0.000607 |
S | 83 | V83V | gtC | gtT | 2 | 2 | C.30 | 0.003454 |
S | 83 | V83V | gtC | gtA | 1 | 2 | C.36.3 | 0.000567 |
S | 83 | V83V | gtC | gtT | 1 | 2 | C.36.3 | 0.000567 |
S | 83 | V83V | gtC | gtT | 2 | 2 | C.37 | 0.000232 |
S | 83 | V83V | gtC | gtT | 1 | 1 | A.19 | 0.009434 |
S | 83 | V83V | gtC | gtT | 1 | 1 | A.2.2 | 0.001689 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.115 | 0.005208 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.19 | 0.00114 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.24 | 0.000431 |
S | 83 | V83V | gtC | gtA | 1 | 1 | AY.35 | 0.000233 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.38 | 0.000499 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.4.2.1 | 0.000149 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.46.1 | 0.001027 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.46.3 | 0.000934 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.61 | 0.000105 |
S | 83 | V83V | gtC | gtA | 1 | 1 | AY.62 | 0.000436 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.63 | 0.000387 |
S | 83 | V83V | gtC | gtA | 1 | 1 | AY.68 | 0.000274 |
S | 83 | V83V | gtC | gtA | 1 | 1 | AY.69 | 0.000187 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.7.1 | 0.000113 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.74 | 0.000116 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.77 | 0.001127 |
S | 83 | V83V | gtC | gtT | 1 | 1 | AY.93 | 0.000273 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.117 | 0.009709 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.135 | 0.004695 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.15 | 0.013514 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.171 | 0.003676 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.220 | 0.001859 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.236 | 0.006897 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.265 | 0.003155 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.269 | 0.001353 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.284 | 0.000107 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.294 | 0.001266 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.3 | 0.008696 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.301 | 0.001179 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.317 | 0.000412 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.332 | 0.03125 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.348 | 0.000796 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.372 | 0.000689 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.397 | 0.002252 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.420 | 0.001006 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.434 | 0.000349 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.448 | 0.002033 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.453 | 0.008475 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.464 | 0.001473 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.512 | 0.028571 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.1.528 | 0.004808 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.128 | 0.000635 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.177.15 | 0.000631 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.177.17 | 0.000821 |
S | 83 | V83V | gtC | gtA | 1 | 1 | B.1.177.21 | 0.000076 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.177.5 | 0.001242 |
S | 83 | V83V | gtC | gtG | 1 | 1 | B.1.177.54 | 0.000606 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.177.57 | 0.000281 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.177.86 | 0.000183 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.179 | 0.003759 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.188 | 0.016667 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.206 | 0.000816 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.210 | 0.002132 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.214.2 | 0.0006 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.218 | 0.005155 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.240 | 0.000216 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.258.14 | 0.00098 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.279 | 0.000514 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.298 | 0.002114 |
S | 83 | V83V | gtC | gtA | 1 | 1 | B.1.311 | 0.000275 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.349 | 0.000715 |
S | 83 | V83V | gtC | gtA | 1 | 1 | B.1.355 | 0.011111 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.36.19 | 0.009259 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.36.36 | 0.000602 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.367 | 0.000792 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.378 | 0.006849 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.381 | 0.007812 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.409 | 0.000781 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.413 | 0.004255 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.416 | 0.001269 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.422 | 0.000812 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.462 | 0.007246 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.474 | 0.001901 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.516 | 0.001957 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.533 | 0.009615 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.560 | 0.00463 |
S | 83 | V83V | gtC | gtA | 1 | 1 | B.1.576 | 0.000907 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.597 | 0.00463 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.609 | 0.000479 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.617.3 | 0.002985 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.634 | 0.003425 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.1.91 | 0.002075 |
S | 83 | V83V | gtC | gtT | 1 | 1 | B.55 | 0.00295 |
S | 83 | V83V | gtC | gtT | 1 | 1 | C.1.2 | 0.004255 |
S | 83 | V83V | gtC | gtT | 1 | 1 | D.2 | 0.000075 |
S | 83 | V83V | gtC | gtT | 1 | 1 | N.4 | 0.004255 |
S | 83 | V83V | gtC | gtT | 1 | 1 | N.5 | 0.001767 |
S | 83 | V83V | gtC | gtT | 1 | 1 | P.1.10 | 0.000269 |
S | 83 | V83V | gtC | gtT | 1 | 1 | P.1.13 | 0.000898 |
S | 83 | V83V | gtC | gtT | 1 | 1 | P.1.16 | 0.000374 |
S | 83 | V83V | gtC | gtT | 1 | 1 | P.1.17 | 0.000162 |
S | 83 | V83V | gtC | gtT | 1 | 1 | P.3 | 0.001595 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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