CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = S : Mut = V83V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
S	83	V83V		syn	gtC	gtT	14671	7872	0.536569	21809-21811
S	83	V83V		syn	gtC	gtA	14671	6652	0.453411	21809-21811
S	83	V83V		syn	gtC	gtG	14671	147	0.0100198	21809-21811

Details of the mutation V83V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
S	83	V83V	gtC	gtT	7872	14671	All	0.001506
S	83	V83V	gtC	gtA	6652	14671	All	0.001272
S	83	V83V	gtC	gtG	147	14671	All	0.000028
S	83	V83V	gtC	gtA	5164	5172	B.1.596	0.449983
S	83	V83V	gtC	gtT	8	5172	B.1.596	0.000697
S	83	V83V	gtC	gtT	2665	2680	AY.4	0.004148
S	83	V83V	gtC	gtA	14	2680	AY.4	0.000022
S	83	V83V	gtC	gtG	1	2680	AY.4	0.000002
S	83	V83V	gtC	gtT	752	1210	B.1.2	0.006622
S	83	V83V	gtC	gtA	458	1210	B.1.2	0.004033
S	83	V83V	gtC	gtT	1056	1068	B.1.1.7	0.000945
S	83	V83V	gtC	gtA	9	1068	B.1.1.7	0.000008
S	83	V83V	gtC	gtG	3	1068	B.1.1.7	0.000003
S	83	V83V	gtC	gtT	431	576	B.1.617.2	0.001623
S	83	V83V	gtC	gtA	81	576	B.1.617.2	0.000305
S	83	V83V	gtC	gtG	64	576	B.1.617.2	0.000241
S	83	V83V	gtC	gtT	174	294	AY.44	0.001059
S	83	V83V	gtC	gtA	120	294	AY.44	0.00073
S	83	V83V	gtC	gtA	126	226	B.1	0.001154
S	83	V83V	gtC	gtT	96	226	B.1	0.000879
S	83	V83V	gtC	gtG	4	226	B.1	0.000037
S	83	V83V	gtC	gtT	78	179	AY.25	0.000469
S	83	V83V	gtC	gtA	77	179	AY.25	0.000463
S	83	V83V	gtC	gtG	24	179	AY.25	0.000144
S	83	V83V	gtC	gtT	127	134	AY.54	0.012109
S	83	V83V	gtC	gtA	7	134	AY.54	0.000667
S	83	V83V	gtC	gtT	120	131	B.1.1	0.002177
S	83	V83V	gtC	gtA	11	131	B.1.1	0.0002
S	83	V83V	gtC	gtT	123	123	AY.33	0.008214
S	83	V83V	gtC	gtT	90	121	AY.39	0.002224
S	83	V83V	gtC	gtA	31	121	AY.39	0.000766
S	83	V83V	gtC	gtT	97	117	AY.43	0.00043
S	83	V83V	gtC	gtA	18	117	AY.43	0.00008
S	83	V83V	gtC	gtG	2	117	AY.43	0.000009
S	83	V83V	gtC	gtA	71	112	AY.103	0.000441
S	83	V83V	gtC	gtT	41	112	AY.103	0.000255
S	83	V83V	gtC	gtT	81	110	AY.3	0.000806
S	83	V83V	gtC	gtA	29	110	AY.3	0.000288
S	83	V83V	gtC	gtT	101	101	B.1.1.251	0.801587
S	83	V83V	gtC	gtT	100	100	B.1.177.27	0.943396
S	83	V83V	gtC	gtT	98	98	P.1	0.001544
S	83	V83V	gtC	gtT	88	92	AY.9.2	0.003232
S	83	V83V	gtC	gtA	4	92	AY.9.2	0.000147
S	83	V83V	gtC	gtA	88	90	B.1.369	0.0251
S	83	V83V	gtC	gtT	1	90	B.1.369	0.000285
S	83	V83V	gtC	gtG	1	90	B.1.369	0.000285
S	83	V83V	gtC	gtT	83	83	B.1.1.487	0.463687
S	83	V83V	gtC	gtA	79	81	AY.113	0.011249
S	83	V83V	gtC	gtT	2	81	AY.113	0.000285
S	83	V83V	gtC	gtG	33	78	AY.100	0.001518
S	83	V83V	gtC	gtT	24	78	AY.100	0.001104
S	83	V83V	gtC	gtA	21	78	AY.100	0.000966
S	83	V83V	gtC	gtT	60	66	AY.102	0.001591
S	83	V83V	gtC	gtA	6	66	AY.102	0.000159
S	83	V83V	gtC	gtT	52	58	AY.92	0.014938
S	83	V83V	gtC	gtA	6	58	AY.92	0.001724
S	83	V83V	gtC	gtT	56	57	B.1.177	0.000737
S	83	V83V	gtC	gtA	1	57	B.1.177	0.000013
S	83	V83V	gtC	gtT	38	54	B.1.429	0.000894
S	83	V83V	gtC	gtA	15	54	B.1.429	0.000353
S	83	V83V	gtC	gtG	1	54	B.1.429	0.000024
S	83	V83V	gtC	gtT	43	44	B.1.1.519	0.001708
S	83	V83V	gtC	gtA	1	44	B.1.1.519	0.00004
S	83	V83V	gtC	gtT	43	43	B.1.177.12	0.006523
S	83	V83V	gtC	gtT	40	41	B.1.637	0.002923
S	83	V83V	gtC	gtA	1	41	B.1.637	0.000073
S	83	V83V	gtC	gtT	38	38	AY.98.1	0.00184
S	83	V83V	gtC	gtT	37	38	B.1.351	0.0011
S	83	V83V	gtC	gtA	1	38	B.1.351	0.00003
S	83	V83V	gtC	gtT	35	35	B.1.243	0.002435
S	83	V83V	gtC	gtT	33	33	B.1.177.85	0.179348
S	83	V83V	gtC	gtA	22	32	AY.5	0.000454
S	83	V83V	gtC	gtT	10	32	AY.5	0.000206
S	83	V83V	gtC	gtT	26	31	AY.13	0.004185
S	83	V83V	gtC	gtA	5	31	AY.13	0.000805
S	83	V83V	gtC	gtA	19	28	B.1.36.22	0.022947
S	83	V83V	gtC	gtT	9	28	B.1.36.22	0.01087
S	83	V83V	gtC	gtT	17	27	AY.119	0.0006
S	83	V83V	gtC	gtA	10	27	AY.119	0.000353
S	83	V83V	gtC	gtT	25	27	AY.42	0.001006
S	83	V83V	gtC	gtA	2	27	AY.42	0.00008
S	83	V83V	gtC	gtA	16	24	AY.26	0.000453
S	83	V83V	gtC	gtT	8	24	AY.26	0.000226
S	83	V83V	gtC	gtT	22	24	B.1.526	0.000517
S	83	V83V	gtC	gtA	2	24	B.1.526	0.000047
S	83	V83V	gtC	gtA	18	23	AY.14	0.001584
S	83	V83V	gtC	gtT	5	23	AY.14	0.00044
S	83	V83V	gtC	gtT	14	23	AY.20	0.000544
S	83	V83V	gtC	gtA	9	23	AY.20	0.00035
S	83	V83V	gtC	gtT	22	22	AY.46	0.00229
S	83	V83V	gtC	gtT	17	22	AY.47	0.000529
S	83	V83V	gtC	gtA	5	22	AY.47	0.000156
S	83	V83V	gtC	gtT	19	19	AY.98	0.001501
S	83	V83V	gtC	gtT	9	18	AY.23	0.000628
S	83	V83V	gtC	gtA	9	18	AY.23	0.000628
S	83	V83V	gtC	gtT	18	18	L.3	0.06383
S	83	V83V	gtC	gtT	17	17	B.1.177.42	0.015206
S	83	V83V	gtC	gtT	11	16	AY.1	0.004353
S	83	V83V	gtC	gtA	5	16	AY.1	0.001979
S	83	V83V	gtC	gtT	15	16	AY.108	0.016538
S	83	V83V	gtC	gtA	1	16	AY.108	0.001103
S	83	V83V	gtC	gtT	16	16	B.1.221	0.001137
S	83	V83V	gtC	gtA	10	15	AY.75	0.00056
S	83	V83V	gtC	gtT	5	15	AY.75	0.00028
S	83	V83V	gtC	gtT	15	15	B.1.1.333	0.016146
S	83	V83V	gtC	gtT	14	14	B.1.617.1	0.001806
S	83	V83V	gtC	gtT	13	13	B.1.1.63	0.005015
S	83	V83V	gtC	gtT	13	13	B.1.177.79	0.030445
S	83	V83V	gtC	gtT	13	13	B.1.621	0.001151
S	83	V83V	gtC	gtT	11	13	P.1.15	0.002556
S	83	V83V	gtC	gtG	2	13	P.1.15	0.000465
S	83	V83V	gtC	gtT	13	13	P.2	0.002426
S	83	V83V	gtC	gtT	12	12	AY.29	0.000189
S	83	V83V	gtC	gtT	11	12	AY.4.2	0.000239
S	83	V83V	gtC	gtA	1	12	AY.4.2	0.000022
S	83	V83V	gtC	gtT	12	12	AY.67	0.005571
S	83	V83V	gtC	gtT	12	12	B.1.1.50	0.008147
S	83	V83V	gtC	gtT	11	11	AY.32	0.005857
S	83	V83V	gtC	gtT	11	11	B.1.1.25	0.006254
S	83	V83V	gtC	gtT	11	11	B.1.1.51	0.0189
S	83	V83V	gtC	gtT	11	11	Q.8	0.001814
S	83	V83V	gtC	gtT	6	10	AY.45	0.00073
S	83	V83V	gtC	gtA	4	10	AY.45	0.000487
S	83	V83V	gtC	gtT	8	10	AY.48	0.003721
S	83	V83V	gtC	gtA	2	10	AY.48	0.00093
S	83	V83V	gtC	gtT	10	10	AY.79	0.012107
S	83	V83V	gtC	gtT	10	10	D.5	0.049751
S	83	V83V	gtC	gtA	5	9	AY.117	0.000423
S	83	V83V	gtC	gtT	4	9	AY.117	0.000338
S	83	V83V	gtC	gtT	9	9	AY.120	0.000335
S	83	V83V	gtC	gtT	8	9	AY.3.1	0.000682
S	83	V83V	gtC	gtA	1	9	AY.3.1	0.000085
S	83	V83V	gtC	gtT	9	9	AY.46.5	0.001786
S	83	V83V	gtC	gtT	9	9	AY.70	0.001877
S	83	V83V	gtC	gtT	9	9	B.1.1.39	0.004587
S	83	V83V	gtC	gtT	9	9	B.1.177.7	0.001484
S	83	V83V	gtC	gtT	9	9	B.1.22	0.011858
S	83	V83V	gtC	gtT	8	8	A	0.003096
S	83	V83V	gtC	gtT	8	8	AY.116	0.002294
S	83	V83V	gtC	gtT	7	8	AY.121	0.000947
S	83	V83V	gtC	gtA	1	8	AY.121	0.000135
S	83	V83V	gtC	gtT	8	8	AY.9	0.000541
S	83	V83V	gtC	gtT	8	8	AY.9.1	0.00067
S	83	V83V	gtC	gtT	8	8	B.1.1.28	0.00249
S	83	V83V	gtC	gtT	8	8	B.1.1.33	0.003367
S	83	V83V	gtC	gtT	7	8	B.1.160	0.000218
S	83	V83V	gtC	gtA	1	8	B.1.160	0.000031
S	83	V83V	gtC	gtT	6	8	B.1.427	0.000303
S	83	V83V	gtC	gtA	2	8	B.1.427	0.000101
S	83	V83V	gtC	gtT	8	8	P.1.7	0.002554
S	83	V83V	gtC	gtT	7	7	AY.46.2	0.004447
S	83	V83V	gtC	gtT	7	7	B.1.561	0.002779
S	83	V83V	gtC	gtT	7	7	P.1.14	0.000335
S	83	V83V	gtC	gtT	6	6	AY.6	0.000247
S	83	V83V	gtC	gtA	5	6	AY.95	0.003805
S	83	V83V	gtC	gtT	1	6	AY.95	0.000761
S	83	V83V	gtC	gtT	5	6	B.1.234	0.00066
S	83	V83V	gtC	gtA	1	6	B.1.234	0.000132
S	83	V83V	gtC	gtT	6	6	B.1.239	0.007326
S	83	V83V	gtC	gtT	6	6	B.1.258.17	0.000624
S	83	V83V	gtC	gtT	6	6	B.1.351.2	0.001815
S	83	V83V	gtC	gtT	6	6	B.1.36	0.000875
S	83	V83V	gtC	gtT	4	6	B.1.466.2	0.001565
S	83	V83V	gtC	gtA	2	6	B.1.466.2	0.000782
S	83	V83V	gtC	gtT	6	6	Q.1	0.000758
S	83	V83V	gtC	gtG	4	5	AY.84	0.00175
S	83	V83V	gtC	gtA	1	5	AY.84	0.000437
S	83	V83V	gtC	gtT	5	5	B.1.1.214	0.000277
S	83	V83V	gtC	gtT	5	5	B.1.375	0.004098
S	83	V83V	gtC	gtT	5	5	B.1.628	0.001762
S	83	V83V	gtC	gtT	5	5	P.1.1	0.001588
S	83	V83V	gtC	gtT	4	4	AD.2	0.000876
S	83	V83V	gtC	gtT	4	4	AY.111	0.000733
S	83	V83V	gtC	gtT	3	4	AY.114	0.000693
S	83	V83V	gtC	gtA	1	4	AY.114	0.000231
S	83	V83V	gtC	gtA	3	4	AY.118	0.000188
S	83	V83V	gtC	gtT	1	4	AY.118	0.000063
S	83	V83V	gtC	gtT	4	4	AY.39.1	0.000158
S	83	V83V	gtC	gtT	4	4	AY.4.5	0.00043
S	83	V83V	gtC	gtT	3	4	AY.46.6	0.000217
S	83	V83V	gtC	gtA	1	4	AY.46.6	0.000072
S	83	V83V	gtC	gtA	4	4	AY.75.1	0.000721
S	83	V83V	gtC	gtT	2	4	AY.99.2	0.000184
S	83	V83V	gtC	gtG	2	4	AY.99.2	0.000184
S	83	V83V	gtC	gtT	4	4	B.1.1.306	0.001754
S	83	V83V	gtC	gtT	4	4	B.1.160.26	0.009685
S	83	V83V	gtC	gtT	4	4	B.1.177.44	0.002076
S	83	V83V	gtC	gtT	4	4	B.1.177.60	0.000874
S	83	V83V	gtC	gtT	4	4	B.1.177.69	0.005935
S	83	V83V	gtC	gtA	4	4	B.1.580	0.01626
S	83	V83V	gtC	gtT	4	4	B.1.623	0.002146
S	83	V83V	gtC	gtT	4	4	P.1.12	0.001936
S	83	V83V	gtC	gtT	3	3	A.2.5.2	0.004717
S	83	V83V	gtC	gtT	2	3	AY.16.1	0.00094
S	83	V83V	gtC	gtA	1	3	AY.16.1	0.00047
S	83	V83V	gtC	gtT	3	3	AY.4.3	0.002525
S	83	V83V	gtC	gtT	2	3	AY.46.4	0.000329
S	83	V83V	gtC	gtA	1	3	AY.46.4	0.000165
S	83	V83V	gtC	gtA	3	3	AY.65	0.001599
S	83	V83V	gtC	gtG	2	3	AY.73	0.001331
S	83	V83V	gtC	gtA	1	3	AY.73	0.000665
S	83	V83V	gtC	gtT	3	3	AY.87	0.002498
S	83	V83V	gtC	gtA	2	3	AY.88	0.001768
S	83	V83V	gtC	gtT	1	3	AY.88	0.000884
S	83	V83V	gtC	gtA	3	3	AY.96	0.006224
S	83	V83V	gtC	gtT	2	3	B	0.000256
S	83	V83V	gtC	gtA	1	3	B	0.000128
S	83	V83V	gtC	gtT	3	3	B.1.1.176	0.001318
S	83	V83V	gtC	gtT	3	3	B.1.1.216	0.002671
S	83	V83V	gtC	gtG	3	3	B.1.163	0.073171
S	83	V83V	gtC	gtT	3	3	B.1.177.81	0.000568
S	83	V83V	gtC	gtT	2	3	B.1.595	0.000522
S	83	V83V	gtC	gtA	1	3	B.1.595	0.000261
S	83	V83V	gtC	gtT	2	3	B.6	0.00182
S	83	V83V	gtC	gtA	1	3	B.6	0.00091
S	83	V83V	gtC	gtT	3	3	C.35	0.002322
S	83	V83V	gtC	gtT	2	3	R.1	0.00018
S	83	V83V	gtC	gtA	1	3	R.1	0.00009
S	83	V83V	gtC	gtT	2	2	A.2.5.3	0.020619
S	83	V83V	gtC	gtT	1	2	AY.106	0.000335
S	83	V83V	gtC	gtA	1	2	AY.106	0.000335
S	83	V83V	gtC	gtA	2	2	AY.116.1	0.000623
S	83	V83V	gtC	gtA	1	2	AY.120.1	0.000321
S	83	V83V	gtC	gtT	1	2	AY.120.1	0.000321
S	83	V83V	gtC	gtT	2	2	AY.27	0.000129
S	83	V83V	gtC	gtA	2	2	AY.40	0.001929
S	83	V83V	gtC	gtA	2	2	AY.50	0.001599
S	83	V83V	gtC	gtA	2	2	AY.52	0.001629
S	83	V83V	gtC	gtT	1	2	AY.53	0.000288
S	83	V83V	gtC	gtA	1	2	AY.53	0.000288
S	83	V83V	gtC	gtT	2	2	AY.55	0.001835
S	83	V83V	gtC	gtT	2	2	AY.7	0.000392
S	83	V83V	gtC	gtT	2	2	B.1.1.1	0.000653
S	83	V83V	gtC	gtT	2	2	B.1.1.161	0.007067
S	83	V83V	gtC	gtT	2	2	B.1.1.263	0.003115
S	83	V83V	gtC	gtT	2	2	B.1.1.305	0.007722
S	83	V83V	gtC	gtT	2	2	B.1.1.318	0.000604
S	83	V83V	gtC	gtT	2	2	B.1.1.326	0.003521
S	83	V83V	gtC	gtT	2	2	B.1.1.37	0.000386
S	83	V83V	gtC	gtA	2	2	B.1.1.398	0.006452
S	83	V83V	gtC	gtT	2	2	B.1.1.71	0.012121
S	83	V83V	gtC	gtT	2	2	B.1.110	0.00905
S	83	V83V	gtC	gtT	2	2	B.1.177.4	0.000422
S	83	V83V	gtC	gtT	2	2	B.1.177.53	0.004785
S	83	V83V	gtC	gtA	2	2	B.1.177.73	0.001133
S	83	V83V	gtC	gtT	2	2	B.1.258	0.000133
S	83	V83V	gtC	gtT	2	2	B.1.265	0.002541
S	83	V83V	gtC	gtT	2	2	B.1.320	0.002491
S	83	V83V	gtC	gtT	2	2	B.1.36.8	0.002
S	83	V83V	gtC	gtT	2	2	B.1.396	0.001411
S	83	V83V	gtC	gtT	2	2	B.1.400	0.000858
S	83	V83V	gtC	gtA	2	2	B.1.469	0.00722
S	83	V83V	gtC	gtT	2	2	B.1.499	0.002101
S	83	V83V	gtC	gtT	2	2	B.1.525	0.000226
S	83	V83V	gtC	gtT	2	2	B.1.565	0.001621
S	83	V83V	gtC	gtT	2	2	B.1.575	0.000607
S	83	V83V	gtC	gtT	2	2	C.30	0.003454
S	83	V83V	gtC	gtA	1	2	C.36.3	0.000567
S	83	V83V	gtC	gtT	1	2	C.36.3	0.000567
S	83	V83V	gtC	gtT	2	2	C.37	0.000232
S	83	V83V	gtC	gtT	1	1	A.19	0.009434
S	83	V83V	gtC	gtT	1	1	A.2.2	0.001689
S	83	V83V	gtC	gtT	1	1	AY.115	0.005208
S	83	V83V	gtC	gtT	1	1	AY.19	0.00114
S	83	V83V	gtC	gtT	1	1	AY.24	0.000431
S	83	V83V	gtC	gtA	1	1	AY.35	0.000233
S	83	V83V	gtC	gtT	1	1	AY.38	0.000499
S	83	V83V	gtC	gtT	1	1	AY.4.2.1	0.000149
S	83	V83V	gtC	gtT	1	1	AY.46.1	0.001027
S	83	V83V	gtC	gtT	1	1	AY.46.3	0.000934
S	83	V83V	gtC	gtT	1	1	AY.61	0.000105
S	83	V83V	gtC	gtA	1	1	AY.62	0.000436
S	83	V83V	gtC	gtT	1	1	AY.63	0.000387
S	83	V83V	gtC	gtA	1	1	AY.68	0.000274
S	83	V83V	gtC	gtA	1	1	AY.69	0.000187
S	83	V83V	gtC	gtT	1	1	AY.7.1	0.000113
S	83	V83V	gtC	gtT	1	1	AY.74	0.000116
S	83	V83V	gtC	gtT	1	1	AY.77	0.001127
S	83	V83V	gtC	gtT	1	1	AY.93	0.000273
S	83	V83V	gtC	gtT	1	1	B.1.1.117	0.009709
S	83	V83V	gtC	gtT	1	1	B.1.1.135	0.004695
S	83	V83V	gtC	gtT	1	1	B.1.1.15	0.013514
S	83	V83V	gtC	gtT	1	1	B.1.1.171	0.003676
S	83	V83V	gtC	gtT	1	1	B.1.1.220	0.001859
S	83	V83V	gtC	gtT	1	1	B.1.1.236	0.006897
S	83	V83V	gtC	gtT	1	1	B.1.1.265	0.003155
S	83	V83V	gtC	gtT	1	1	B.1.1.269	0.001353
S	83	V83V	gtC	gtT	1	1	B.1.1.284	0.000107
S	83	V83V	gtC	gtT	1	1	B.1.1.294	0.001266
S	83	V83V	gtC	gtT	1	1	B.1.1.3	0.008696
S	83	V83V	gtC	gtT	1	1	B.1.1.301	0.001179
S	83	V83V	gtC	gtT	1	1	B.1.1.317	0.000412
S	83	V83V	gtC	gtT	1	1	B.1.1.332	0.03125
S	83	V83V	gtC	gtT	1	1	B.1.1.348	0.000796
S	83	V83V	gtC	gtT	1	1	B.1.1.372	0.000689
S	83	V83V	gtC	gtT	1	1	B.1.1.397	0.002252
S	83	V83V	gtC	gtT	1	1	B.1.1.420	0.001006
S	83	V83V	gtC	gtT	1	1	B.1.1.434	0.000349
S	83	V83V	gtC	gtT	1	1	B.1.1.448	0.002033
S	83	V83V	gtC	gtT	1	1	B.1.1.453	0.008475
S	83	V83V	gtC	gtT	1	1	B.1.1.464	0.001473
S	83	V83V	gtC	gtT	1	1	B.1.1.512	0.028571
S	83	V83V	gtC	gtT	1	1	B.1.1.528	0.004808
S	83	V83V	gtC	gtT	1	1	B.1.128	0.000635
S	83	V83V	gtC	gtT	1	1	B.1.177.15	0.000631
S	83	V83V	gtC	gtT	1	1	B.1.177.17	0.000821
S	83	V83V	gtC	gtA	1	1	B.1.177.21	0.000076
S	83	V83V	gtC	gtT	1	1	B.1.177.5	0.001242
S	83	V83V	gtC	gtG	1	1	B.1.177.54	0.000606
S	83	V83V	gtC	gtT	1	1	B.1.177.57	0.000281
S	83	V83V	gtC	gtT	1	1	B.1.177.86	0.000183
S	83	V83V	gtC	gtT	1	1	B.1.179	0.003759
S	83	V83V	gtC	gtT	1	1	B.1.188	0.016667
S	83	V83V	gtC	gtT	1	1	B.1.206	0.000816
S	83	V83V	gtC	gtT	1	1	B.1.210	0.002132
S	83	V83V	gtC	gtT	1	1	B.1.214.2	0.0006
S	83	V83V	gtC	gtT	1	1	B.1.218	0.005155
S	83	V83V	gtC	gtT	1	1	B.1.240	0.000216
S	83	V83V	gtC	gtT	1	1	B.1.258.14	0.00098
S	83	V83V	gtC	gtT	1	1	B.1.279	0.000514
S	83	V83V	gtC	gtT	1	1	B.1.298	0.002114
S	83	V83V	gtC	gtA	1	1	B.1.311	0.000275
S	83	V83V	gtC	gtT	1	1	B.1.349	0.000715
S	83	V83V	gtC	gtA	1	1	B.1.355	0.011111
S	83	V83V	gtC	gtT	1	1	B.1.36.19	0.009259
S	83	V83V	gtC	gtT	1	1	B.1.36.36	0.000602
S	83	V83V	gtC	gtT	1	1	B.1.367	0.000792
S	83	V83V	gtC	gtT	1	1	B.1.378	0.006849
S	83	V83V	gtC	gtT	1	1	B.1.381	0.007812
S	83	V83V	gtC	gtT	1	1	B.1.409	0.000781
S	83	V83V	gtC	gtT	1	1	B.1.413	0.004255
S	83	V83V	gtC	gtT	1	1	B.1.416	0.001269
S	83	V83V	gtC	gtT	1	1	B.1.422	0.000812
S	83	V83V	gtC	gtT	1	1	B.1.462	0.007246
S	83	V83V	gtC	gtT	1	1	B.1.474	0.001901
S	83	V83V	gtC	gtT	1	1	B.1.516	0.001957
S	83	V83V	gtC	gtT	1	1	B.1.533	0.009615
S	83	V83V	gtC	gtT	1	1	B.1.560	0.00463
S	83	V83V	gtC	gtA	1	1	B.1.576	0.000907
S	83	V83V	gtC	gtT	1	1	B.1.597	0.00463
S	83	V83V	gtC	gtT	1	1	B.1.609	0.000479
S	83	V83V	gtC	gtT	1	1	B.1.617.3	0.002985
S	83	V83V	gtC	gtT	1	1	B.1.634	0.003425
S	83	V83V	gtC	gtT	1	1	B.1.91	0.002075
S	83	V83V	gtC	gtT	1	1	B.55	0.00295
S	83	V83V	gtC	gtT	1	1	C.1.2	0.004255
S	83	V83V	gtC	gtT	1	1	D.2	0.000075
S	83	V83V	gtC	gtT	1	1	N.4	0.004255
S	83	V83V	gtC	gtT	1	1	N.5	0.001767
S	83	V83V	gtC	gtT	1	1	P.1.10	0.000269
S	83	V83V	gtC	gtT	1	1	P.1.13	0.000898
S	83	V83V	gtC	gtT	1	1	P.1.16	0.000374
S	83	V83V	gtC	gtT	1	1	P.1.17	0.000162
S	83	V83V	gtC	gtT	1	1	P.3	0.001595

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.