CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 772 | V772I | nonsyn | Gtt | Att | 11124 | 11123 | 0.99991 | 23876-23878 | |
S | 772 | V772I | nonsyn | GtT | AtA | 11124 | 1 | 0.0000898957 | 23876-23878 |
Details of the mutation V772I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 772 | V772I | Gtt | Att | 11123 | 11124 | All | 0.002127 |
S | 772 | V772I | GtT | AtA | 1 | 11124 | All | 0 |
S | 772 | V772I | Gtt | Att | 9547 | 9547 | B.1.258.17 | 0.992618 |
S | 772 | V772I | Gtt | Att | 290 | 290 | B.1.258.4 | 1 |
S | 772 | V772I | Gtt | Att | 143 | 143 | B.1 | 0.00131 |
S | 772 | V772I | Gtt | Att | 136 | 136 | B.1.258 | 0.00905 |
S | 772 | V772I | Gtt | Att | 116 | 116 | B.1.1.7 | 0.000104 |
S | 772 | V772I | Gtt | Att | 114 | 114 | B.1.258.5 | 1 |
S | 772 | V772I | Gtt | Att | 108 | 108 | AY.5 | 0.00223 |
S | 772 | V772I | Gtt | Att | 90 | 90 | B.1.617.2 | 0.000339 |
S | 772 | V772I | Gtt | Att | 65 | 65 | AY.4 | 0.000101 |
S | 772 | V772I | Gtt | Att | 49 | 49 | AY.116.1 | 0.01526 |
S | 772 | V772I | Gtt | Att | 43 | 43 | AY.42 | 0.00173 |
S | 772 | V772I | Gtt | Att | 42 | 42 | B.1.258.23 | 1 |
S | 772 | V772I | Gtt | Att | 30 | 30 | AY.116 | 0.008603 |
S | 772 | V772I | Gtt | Att | 28 | 28 | B.1.609 | 0.013423 |
S | 772 | V772I | Gtt | Att | 27 | 27 | B.1.1 | 0.00049 |
S | 772 | V772I | Gtt | Att | 20 | 20 | B.1.399 | 0.038685 |
S | 772 | V772I | Gtt | Att | 19 | 19 | B.1.258.24 | 0.204301 |
S | 772 | V772I | Gtt | Att | 17 | 17 | AY.43 | 0.000075 |
S | 772 | V772I | Gtt | Att | 16 | 16 | B.1.36 | 0.002334 |
S | 772 | V772I | Gtt | Att | 15 | 15 | B.1.2 | 0.000132 |
S | 772 | V772I | Gtt | Att | 15 | 15 | B.1.367 | 0.011886 |
S | 772 | V772I | Gtt | Att | 13 | 13 | AY.102 | 0.000345 |
S | 772 | V772I | Gtt | Att | 12 | 12 | B.1.177 | 0.000158 |
S | 772 | V772I | Gtt | Att | 10 | 10 | B.1.221 | 0.00071 |
S | 772 | V772I | Gtt | Att | 10 | 10 | B.1.36.31 | 0.017513 |
S | 772 | V772I | Gtt | Att | 9 | 9 | P.6 | 0.028302 |
S | 772 | V772I | Gtt | Att | 7 | 7 | AY.20 | 0.000272 |
S | 772 | V772I | Gtt | Att | 7 | 7 | B.4.1 | 0.132075 |
S | 772 | V772I | Gtt | Att | 6 | 6 | AY.44 | 0.000037 |
S | 772 | V772I | Gtt | Att | 6 | 6 | AY.9.2 | 0.00022 |
S | 772 | V772I | Gtt | Att | 5 | 5 | B.1.596 | 0.000436 |
S | 772 | V772I | Gtt | Att | 4 | 4 | AY.119 | 0.000141 |
S | 772 | V772I | Gtt | Att | 4 | 4 | AY.3 | 0.00004 |
S | 772 | V772I | Gtt | Att | 4 | 4 | AY.75 | 0.000224 |
S | 772 | V772I | Gtt | Att | 4 | 4 | AY.90 | 0.002738 |
S | 772 | V772I | Gtt | Att | 4 | 4 | AY.99.2 | 0.000369 |
S | 772 | V772I | Gtt | Att | 4 | 4 | P.3 | 0.00638 |
S | 772 | V772I | Gtt | Att | 3 | 3 | AY.39 | 0.000074 |
S | 772 | V772I | Gtt | Att | 3 | 3 | AY.45 | 0.000365 |
S | 772 | V772I | Gtt | Att | 3 | 3 | B | 0.000383 |
S | 772 | V772I | Gtt | Att | 3 | 3 | B.1.177.73 | 0.001699 |
S | 772 | V772I | Gtt | Att | 3 | 3 | B.1.375 | 0.002459 |
S | 772 | V772I | Gtt | Att | 3 | 3 | B.1.429 | 0.000071 |
S | 772 | V772I | Gtt | Att | 3 | 3 | Q.1 | 0.000379 |
S | 772 | V772I | Gtt | Att | 2 | 2 | AY.100 | 0.000092 |
S | 772 | V772I | Gtt | Att | 2 | 2 | AY.25 | 0.000012 |
S | 772 | V772I | Gtt | Att | 2 | 2 | AY.33 | 0.000134 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.160 | 0.000062 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.177.86 | 0.000367 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.243 | 0.000139 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.351 | 0.000059 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.480 | 0.004975 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.526 | 0.000047 |
S | 772 | V772I | Gtt | Att | 2 | 2 | B.1.617.1 | 0.000258 |
S | 772 | V772I | GtT | AtA | 1 | 2 | P.1.12 | 0.000484 |
S | 772 | V772I | Gtt | Att | 1 | 2 | P.1.12 | 0.000484 |
S | 772 | V772I | Gtt | Att | 1 | 1 | A | 0.000387 |
S | 772 | V772I | Gtt | Att | 1 | 1 | A.2.5 | 0.000499 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.103 | 0.000006 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.111 | 0.000183 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.121 | 0.000135 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.23 | 0.00007 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.29 | 0.000016 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.29.1 | 0.000221 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.46.6 | 0.000072 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.47 | 0.000031 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.5.4 | 0.000277 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.52 | 0.000814 |
S | 772 | V772I | Gtt | Att | 1 | 1 | AY.70 | 0.000209 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.192 | 0.002309 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.306 | 0.000438 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.317 | 0.000412 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.409 | 0.002833 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.519 | 0.00004 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.1.70 | 0.000341 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.139 | 0.000733 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.157 | 0.002985 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.160.33 | 0.004425 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.222 | 0.001692 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.232 | 0.000537 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.237 | 0.004975 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.301 | 0.005917 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.351.3 | 0.000876 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.36.17 | 0.000494 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.36.18 | 0.00042 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.362 | 0.001541 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.438.1 | 0.000107 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.524 | 0.001406 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.525 | 0.000113 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.599 | 0.00365 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.623 | 0.000536 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.627 | 0.00202 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.1.637 | 0.000073 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.33 | 0.021277 |
S | 772 | V772I | Gtt | Att | 1 | 1 | B.4 | 0.002208 |
S | 772 | V772I | Gtt | Att | 1 | 1 | P.1 | 0.000016 |
S | 772 | V772I | Gtt | Att | 1 | 1 | P.1.15 | 0.000232 |
S | 772 | V772I | Gtt | Att | 1 | 1 | Q.3 | 0.000145 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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