CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V70V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S70V70VsyngtCgtT412939470.95592221770-21772
S70V70VsyngtCgtA41291630.039476921770-21772
S70V70VsyngtCgtG4129190.004601621770-21772

Details of the mutation V70V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S70V70VgtCgtT39474129All0.000755
S70V70VgtCgtA1634129All0.000031
S70V70VgtCgtG194129All0.000004
S70V70VgtCgtT404415B.1.617.20.001521
S70V70VgtCgtA11415B.1.617.20.000041
S70V70VgtCgtT293293AY.4.20.006355
S70V70VgtCgtT280286P.10.004411
S70V70VgtCgtA4286P.10.000063
S70V70VgtCgtG2286P.10.000032
S70V70VgtCgtT250252B.10.00229
S70V70VgtCgtA2252B.10.000018
S70V70VgtCgtT244249AY.40.00038
S70V70VgtCgtA5249AY.40.000008
S70V70VgtCgtT199199B.1.20.001752
S70V70VgtCgtT100156AY.440.000609
S70V70VgtCgtA56156AY.440.000341
S70V70VgtCgtT123123B.1.1.1630.938931
S70V70VgtCgtT112112B.1.10.002032
S70V70VgtCgtT107107P.1.80.511962
S70V70VgtCgtT105105B.1.1.4280.990566
S70V70VgtCgtT8285AY.1030.000509
S70V70VgtCgtA285AY.1030.000012
S70V70VgtCgtG185AY.1030.000006
S70V70VgtCgtT8585B.1.177.820.040573
S70V70VgtCgtT7579AY.250.000451
S70V70VgtCgtA479AY.250.000024
S70V70VgtCgtT7071AY.9.20.002571
S70V70VgtCgtG171AY.9.20.000037
S70V70VgtCgtT7171B.1.1.500.048201
S70V70VgtCgtT5761AY.430.000253
S70V70VgtCgtA461AY.430.000018
S70V70VgtCgtT5959B.1.36.201
S70V70VgtCgtT5858B.1.2430.004036
S70V70VgtCgtT4849AY.200.001866
S70V70VgtCgtG149AY.200.000039
S70V70VgtCgtT4949B.1.177.240.063472
S70V70VgtCgtT4848AY.99.20.004424
S70V70VgtCgtT4747B.1.1770.000619
S70V70VgtCgtT4545AY.1020.001193
S70V70VgtCgtT4242B.1.1.610.368421
S70V70VgtCgtT4242B.1.177.210.003212
S70V70VgtCgtT4242B.1.6210.003718
S70V70VgtCgtT3333B.1.2871
S70V70VgtCgtT3232B.1.2790.016436
S70V70VgtCgtT3030B.1.1.5190.001191
S70V70VgtCgtT1924B.1.1.70.000017
S70V70VgtCgtG524B.1.1.70.000004
S70V70VgtCgtT2222AY.1000.001012
S70V70VgtCgtT1921AY.290.0003
S70V70VgtCgtA221AY.290.000032
S70V70VgtCgtT1120AY.260.000311
S70V70VgtCgtA920AY.260.000255
S70V70VgtCgtT2020AY.30.000199
S70V70VgtCgtT1515AY.1060.005023
S70V70VgtCgtA1215B.1.360.001751
S70V70VgtCgtT315B.1.360.000438
S70V70VgtCgtT1414AE.80.006846
S70V70VgtCgtT1414B.1.1600.000437
S70V70VgtCgtT1313AY.1010.006376
S70V70VgtCgtT1313AY.39.10.000515
S70V70VgtCgtT1313AY.470.000404
S70V70VgtCgtT913B.1.4290.000212
S70V70VgtCgtA413B.1.4290.000094
S70V70VgtCgtT1313B.1.5260.000306
S70V70VgtCgtT812AY.1190.000282
S70V70VgtCgtA412AY.1190.000141
S70V70VgtCgtT1212AY.46.50.002381
S70V70VgtCgtT1212AY.90.000811
S70V70VgtCgtT1112P.1.140.000526
S70V70VgtCgtA112P.1.140.000048
S70V70VgtCgtT1011AY.1130.001424
S70V70VgtCgtA111AY.1130.000142
S70V70VgtCgtT1111B.1.1.2220.002244
S70V70VgtCgtA1011B.1.4270.000505
S70V70VgtCgtT111B.1.4270.00005
S70V70VgtCgtT1111B.1.564.10.01735
S70V70VgtCgtT1111B.1.617.10.001419
S70V70VgtCgtT1010B.1.2210.00071
S70V70VgtCgtT910C.370.001045
S70V70VgtCgtA110C.370.000116
S70V70VgtCgtT99AY.390.000222
S70V70VgtCgtA59AY.50.000103
S70V70VgtCgtT49AY.50.000083
S70V70VgtCgtT99AY.750.000504
S70V70VgtCgtT99AY.930.002458
S70V70VgtCgtT99B.1.258.30.015075
S70V70VgtCgtT88B.1.177.810.001515
S70V70VgtCgtT88B.1.5960.000697
S70V70VgtCgtT77AA.20.053846
S70V70VgtCgtT77AZ.30.010638
S70V70VgtCgtT77B0.000895
S70V70VgtCgtT67B.1.1.280.001867
S70V70VgtCgtG17B.1.1.280.000311
S70V70VgtCgtT77B.1.1.3160.006475
S70V70VgtCgtT77B.1.177.620.008343
S70V70VgtCgtT77B.1.2310.225806
S70V70VgtCgtT77B.1.3110.001922
S70V70VgtCgtT66AY.1200.000223
S70V70VgtCgtT56AY.450.000608
S70V70VgtCgtA16AY.450.000122
S70V70VgtCgtT56AY.850.002136
S70V70VgtCgtG16AY.850.000427
S70V70VgtCgtT66AY.98.10.000291
S70V70VgtCgtT66B.1.2580.000399
S70V70VgtCgtT66B.1.3690.001711
S70V70VgtCgtT66B.1.4090.004687
S70V70VgtCgtT55A.23.10.003521
S70V70VgtCgtT55AY.1170.000423
S70V70VgtCgtT55AY.4.50.000537
S70V70VgtCgtT55AY.460.00052
S70V70VgtCgtT55AY.46.60.000361
S70V70VgtCgtT55B.1.177.860.000917
S70V70VgtCgtT55C.160.005302
S70V70VgtCgtT45P.20.000747
S70V70VgtCgtG15P.20.000187
S70V70VgtCgtT44AY.29.10.000882
S70V70VgtCgtT44AY.46.20.002541
S70V70VgtCgtT44AY.46.30.003735
S70V70VgtCgtT34AY.5.30.001012
S70V70VgtCgtA14AY.5.30.000337
S70V70VgtCgtT44AY.60.000165
S70V70VgtCgtA44AY.730.002661
S70V70VgtCgtT44AY.980.000316
S70V70VgtCgtT44B.1.1.3770.005525
S70V70VgtCgtT44B.1.160.260.009685
S70V70VgtCgtT24B.1.2340.000264
S70V70VgtCgtA24B.1.2340.000264
S70V70VgtCgtT44B.1.5780.071429
S70V70VgtCgtT44B.1.5880.00364
S70V70VgtCgtT44B.1.5950.001044
S70V70VgtCgtA23AY.230.000139
S70V70VgtCgtT13AY.230.00007
S70V70VgtCgtT33AY.270.000194
S70V70VgtCgtT23AY.330.000134
S70V70VgtCgtA13AY.330.000067
S70V70VgtCgtT33AY.340.000291
S70V70VgtCgtT33AY.420.000121
S70V70VgtCgtT33AY.530.000863
S70V70VgtCgtT23AY.610.00021
S70V70VgtCgtG13AY.610.000105
S70V70VgtCgtT33AY.900.002053
S70V70VgtCgtT33B.1.1.2140.000166
S70V70VgtCgtT23B.1.1.3170.000823
S70V70VgtCgtA13B.1.1.3170.000412
S70V70VgtCgtT33B.1.1.390.001529
S70V70VgtCgtT33B.1.177.770.002179
S70V70VgtCgtT33B.1.3510.000089
S70V70VgtCgtT33B.1.4620.021739
S70V70VgtCgtT33B.1.6090.001438
S70V70VgtCgtT33B.1.6230.001609
S70V70VgtCgtT33B.1.6370.000219
S70V70VgtCgtT33B.6.60.002667
S70V70VgtCgtT33C.350.002322
S70V70VgtCgtT33D.20.000225
S70V70VgtCgtT33P.1.70.000958
S70V70VgtCgtG220.111111
S70V70VgtCgtT22AY.120.2.10.000997
S70V70VgtCgtT22AY.3.10.000171
S70V70VgtCgtT22AY.550.001835
S70V70VgtCgtT22AY.7.10.000225
S70V70VgtCgtT22B.1.1.10.000653
S70V70VgtCgtT22B.1.1.2390.064516
S70V70VgtCgtT22B.1.1.3180.000604
S70V70VgtCgtT22B.1.1.330.000842
S70V70VgtCgtT22B.1.1.4340.000697
S70V70VgtCgtA22B.1.1.530.027397
S70V70VgtCgtT22B.1.177.170.001642
S70V70VgtCgtT22B.1.177.320.002699
S70V70VgtCgtT22B.1.2320.001075
S70V70VgtCgtT22B.1.3320.006993
S70V70VgtCgtT22B.1.3490.00143
S70V70VgtCgtT22B.1.36.290.001035
S70V70VgtCgtA12B.1.4360.001029
S70V70VgtCgtT12B.1.4360.001029
S70V70VgtCgtT22B.1.466.20.000782
S70V70VgtCgtT22B.1.5090.001732
S70V70VgtCgtT22B.1.5680.002222
S70V70VgtCgtT22L.30.007092
S70V70VgtCgtA22P.1.100.000539
S70V70VgtCgtT22P.1.150.000465
S70V70VgtCgtT11A.2.5.20.001572
S70V70VgtCgtT11AY.10.000396
S70V70VgtCgtT11AY.1080.001103
S70V70VgtCgtT11AY.1100.000113
S70V70VgtCgtT11AY.1110.000183
S70V70VgtCgtT11AY.1180.000063
S70V70VgtCgtT11AY.120.10.000321
S70V70VgtCgtA11AY.1210.000135
S70V70VgtCgtT11AY.130.000161
S70V70VgtCgtT11AY.140.000088
S70V70VgtCgtA11AY.240.000431
S70V70VgtCgtT11AY.300.000396
S70V70VgtCgtT11AY.350.000233
S70V70VgtCgtT11AY.4.2.10.000149
S70V70VgtCgtT11AY.400.000964
S70V70VgtCgtT11AY.46.40.000165
S70V70VgtCgtG11AY.590.00053
S70V70VgtCgtT11AY.650.000533
S70V70VgtCgtA11AY.690.000187
S70V70VgtCgtT11AY.710.000475
S70V70VgtCgtT11AY.75.10.00018
S70V70VgtCgtT11AY.890.004902
S70V70VgtCgtT11AY.9.10.000084
S70V70VgtCgtT11AZ.20.000821
S70V70VgtCgtT11B.1.1.100.001115
S70V70VgtCgtT11B.1.1.1180.010204
S70V70VgtCgtT11B.1.1.1920.002309
S70V70VgtCgtT11B.1.1.1940.00495
S70V70VgtCgtT11B.1.1.2650.003155
S70V70VgtCgtT11B.1.1.2710.055556
S70V70VgtCgtT11B.1.1.2790.001121
S70V70VgtCgtT11B.1.1.2910.000742
S70V70VgtCgtT11B.1.1.2940.001266
S70V70VgtCgtT11B.1.1.2980.000862
S70V70VgtCgtT11B.1.1.3010.001179
S70V70VgtCgtT11B.1.1.3060.000438
S70V70VgtCgtT11B.1.1.3090.005848
S70V70VgtCgtT11B.1.1.340.013158
S70V70VgtCgtT11B.1.1.3690.000446
S70V70VgtCgtT11B.1.1.3720.000689
S70V70VgtCgtT11B.1.1.4110.014706
S70V70VgtCgtT11B.1.1.700.000341
S70V70VgtCgtT11B.1.1.920.033333
S70V70VgtCgtT11B.1.1180.006711
S70V70VgtCgtT11B.1.1400.018868
S70V70VgtCgtT11B.1.177.100.000878
S70V70VgtCgtT11B.1.177.120.000152
S70V70VgtCgtT11B.1.177.180.00116
S70V70VgtCgtA11B.1.177.40.000211
S70V70VgtCgtA11B.1.177.50.001242
S70V70VgtCgtT11B.1.177.540.000606
S70V70VgtCgtT11B.1.177.80.000752
S70V70VgtCgtT11B.1.177.90.001332
S70V70VgtCgtT11B.1.2390.001221
S70V70VgtCgtT11B.1.30.002618
S70V70VgtCgtT11B.1.3240.001605
S70V70VgtCgtT11B.1.3280.03125
S70V70VgtCgtT11B.1.3500.002933
S70V70VgtCgtT11B.1.351.20.000303
S70V70VgtCgtT11B.1.36.220.001208
S70V70VgtCgtT11B.1.36.350.002604
S70V70VgtCgtA11B.1.36.80.001
S70V70VgtCgtT11B.1.3770.004566
S70V70VgtCgtT11B.1.3990.001934
S70V70VgtCgtT11B.1.4160.001269
S70V70VgtCgtT11B.1.4280.00102
S70V70VgtCgtT11B.1.4320.011236
S70V70VgtCgtT11B.1.4410.009615
S70V70VgtCgtT11B.1.4500.011364
S70V70VgtCgtG11B.1.4530.003236
S70V70VgtCgtT11B.1.4560.003268
S70V70VgtCgtA11B.1.4680.005714
S70V70VgtCgtT11B.1.4800.002488
S70V70VgtCgtA11B.1.4970.000315
S70V70VgtCgtT11B.1.5750.000303
S70V70VgtCgtT11B.1.5770.000687
S70V70VgtCgtT11B.1.5800.004065
S70V70VgtCgtT11B.1.5820.000491
S70V70VgtCgtA11B.1.617.30.002985
S70V70VgtCgtG11B.1.6250.002353
S70V70VgtCgtT11B.290.003509
S70V70VgtCgtT11B.400.000364
S70V70VgtCgtT11B.60.00091
S70V70VgtCgtT11C.230.005814
S70V70VgtCgtT11C.270.018519
S70V70VgtCgtT11P.1.120.000484
S70V70VgtCgtT11P.1.170.000162
S70V70VgtCgtT11R.10.00009
S70V70VgtCgtT11U.30.003861

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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