CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V6F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S6V6FnonsynGttTtt40754075121578-21580

Details of the mutation V6F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S6V6FGttTtt40754075All0.000779
S6V6FGttTtt19271927AY.430.008538
S6V6FGttTtt283283B.1.1.70.000253
S6V6FGttTtt279279AY.440.001698
S6V6FGttTtt216216AY.40.000336
S6V6FGttTtt185185B.1.617.20.000697
S6V6FGttTtt180180B.1.3200.224159
S6V6FGttTtt139139B.1.160.110.794286
S6V6FGttTtt8181B.10.000742
S6V6FGttTtt6767AY.1030.000416
S6V6FGttTtt3434B.1.20.000299
S6V6FGttTtt3333AY.46.60.002383
S6V6FGttTtt3131AY.30.000308
S6V6FGttTtt3030P.10.000473
S6V6FGttTtt2424B.1.1.4830.923077
S6V6FGttTtt2121AY.1210.002842
S6V6FGttTtt2020B.1.10.000363
S6V6FGttTtt2020B.1.1.2030.338983
S6V6FGttTtt2020B.1.3490.014296
S6V6FGttTtt1818AY.5.30.006073
S6V6FGttTtt1515AY.1020.000398
S6V6FGttTtt1414B.1.1770.000184
S6V6FGttTtt1212B.1.5280.571429
S6V6FGttTtt1111AY.50.000227
S6V6FGttTtt1010AY.1200.000372
S6V6FGttTtt1010AY.250.00006
S6V6FGttTtt1010AY.470.000311
S6V6FGttTtt1010B.1.1600.000312
S6V6FGttTtt1010B.1.3510.000297
S6V6FGttTtt99B.1.4290.000212
S6V6FGttTtt99B.1.5260.000212
S6V6FGttTtt99P.50.123288
S6V6FGttTtt88AY.1190.000282
S6V6FGttTtt88AY.200.000311
S6V6FGttTtt88AY.930.002185
S6V6FGttTtt88B.1.1.4410.4
S6V6FGttTtt88B.1.1.5190.000318
S6V6FGttTtt88B.1.2430.000557
S6V6FGttTtt88B.1.6370.000585
S6V6FGttTtt77AY.260.000198
S6V6FGttTtt77AY.90.000473
S6V6FGttTtt77P.1.170.001132
S6V6FGttTtt66AY.1000.000276
S6V6FGttTtt66AY.1130.000854
S6V6FGttTtt66AY.640.003571
S6V6FGttTtt66AY.750.000336
S6V6FGttTtt66B.1.177.440.003114
S6V6FGttTtt66B.1.177.570.001686
S6V6FGttTtt55AY.420.000201
S6V6FGttTtt55AY.780.007704
S6V6FGttTtt55B.1.1.2140.000277
S6V6FGttTtt55B.1.1.2840.000537
S6V6FGttTtt55B.1.360.00073
S6V6FGttTtt44A.280.010582
S6V6FGttTtt44AY.390.000099
S6V6FGttTtt44AY.4.20.000087
S6V6FGttTtt44AY.98.10.000194
S6V6FGttTtt44B.1.177.600.000874
S6V6FGttTtt44B.1.2320.002149
S6V6FGttTtt44B.1.4000.001716
S6V6FGttTtt44B.1.5960.000349
S6V6FGttTtt33AE.80.001467
S6V6FGttTtt33AY.1180.000188
S6V6FGttTtt33AY.190.003421
S6V6FGttTtt33AY.290.000047
S6V6FGttTtt33AY.39.10.000119
S6V6FGttTtt33AY.460.000312
S6V6FGttTtt33AY.60.000123
S6V6FGttTtt33AY.700.000626
S6V6FGttTtt33B.1.1.3170.001235
S6V6FGttTtt33B.1.2340.000396
S6V6FGttTtt33B.1.466.20.001174
S6V6FGttTtt33B.1.617.10.000387
S6V6FGttTtt33B.1.617.30.008955
S6V6FGttTtt33P.1.20.003468
S6V6FGttTtt33Q.10.000379
S6V6FGttTtt22A0.000774
S6V6FGttTtt22A.2.50.000998
S6V6FGttTtt22A.23.10.001408
S6V6FGttTtt22AY.1060.00067
S6V6FGttTtt22AY.116.10.000623
S6V6FGttTtt22AY.230.000139
S6V6FGttTtt22AY.29.10.000441
S6V6FGttTtt22AY.3.10.000171
S6V6FGttTtt22AY.34.10.00102
S6V6FGttTtt22AY.4.50.000215
S6V6FGttTtt22AY.610.00021
S6V6FGttTtt22AY.710.00095
S6V6FGttTtt22AY.9.20.000073
S6V6FGttTtt22AY.980.000158
S6V6FGttTtt22B.1.1.2200.003717
S6V6FGttTtt22B.1.1.2580.006515
S6V6FGttTtt22B.1.1.3060.000877
S6V6FGttTtt22B.1.2210.000142
S6V6FGttTtt22B.1.2410.001623
S6V6FGttTtt22B.1.2580.000133
S6V6FGttTtt22B.1.2650.002541
S6V6FGttTtt22B.1.36.80.002
S6V6FGttTtt22B.1.5950.000522
S6V6FGttTtt22B.1.595.10.011696
S6V6FGttTtt22B.1.6090.000959
S6V6FGttTtt22B.1.6190.001742
S6V6FGttTtt22B.1.6210.000177
S6V6FGttTtt22B.1.6280.000705
S6V6FGttTtt22D.20.00015
S6V6FGttTtt11A.20.000662
S6V6FGttTtt11AD.20.000219
S6V6FGttTtt11AY.100.00053
S6V6FGttTtt11AY.1050.000643
S6V6FGttTtt11AY.1080.001103
S6V6FGttTtt11AY.1140.000231
S6V6FGttTtt11AY.160.00038
S6V6FGttTtt11AY.16.10.00047
S6V6FGttTtt11AY.23.10.000417
S6V6FGttTtt11AY.270.000065
S6V6FGttTtt11AY.300.000396
S6V6FGttTtt11AY.330.000067
S6V6FGttTtt11AY.4.2.10.000149
S6V6FGttTtt11AY.410.000294
S6V6FGttTtt11AY.46.10.001027
S6V6FGttTtt11AY.530.000288
S6V6FGttTtt11AY.550.000917
S6V6FGttTtt11AY.720.001361
S6V6FGttTtt11AY.740.000116
S6V6FGttTtt11AY.880.000884
S6V6FGttTtt11AY.9.10.000084
S6V6FGttTtt11AY.900.000684
S6V6FGttTtt11AY.99.10.001553
S6V6FGttTtt11B.1.1.1630.007634
S6V6FGttTtt11B.1.1.2410.00207
S6V6FGttTtt11B.1.1.280.000311
S6V6FGttTtt11B.1.1.2830.023256
S6V6FGttTtt11B.1.1.370.000193
S6V6FGttTtt11B.1.1.3780.007299
S6V6FGttTtt11B.1.1.390.00051
S6V6FGttTtt11B.1.1.4320.001266
S6V6FGttTtt11B.1.1.500.000679
S6V6FGttTtt11B.1.1.560.017857
S6V6FGttTtt11B.1.1.700.000341
S6V6FGttTtt11B.1.1110.001175
S6V6FGttTtt11B.1.1430.021277
S6V6FGttTtt11B.1.160.120.00641
S6V6FGttTtt11B.1.160.320.004292
S6V6FGttTtt11B.1.177.160.000664
S6V6FGttTtt11B.1.177.170.000821
S6V6FGttTtt11B.1.177.310.011494
S6V6FGttTtt11B.1.177.40.000211
S6V6FGttTtt11B.1.177.730.000566
S6V6FGttTtt11B.1.177.860.000183
S6V6FGttTtt11B.1.1990.004132
S6V6FGttTtt11B.1.3560.001727
S6V6FGttTtt11B.1.36.310.001751
S6V6FGttTtt11B.1.36.390.002217
S6V6FGttTtt11B.1.3690.000285
S6V6FGttTtt11B.1.3890.001002
S6V6FGttTtt11B.1.3960.000706
S6V6FGttTtt11B.1.5030.002488
S6V6FGttTtt11B.1.5100.026316
S6V6FGttTtt11B.1.5250.000113
S6V6FGttTtt11B.1.5600.00463
S6V6FGttTtt11B.1.5800.004065
S6V6FGttTtt11B.1.970.025641
S6V6FGttTtt11B.270.015385
S6V6FGttTtt11B.6.10.026316
S6V6FGttTtt11C.300.001727
S6V6FGttTtt11C.36.3.10.002717
S6V6FGttTtt11P.1.140.000048
S6V6FGttTtt11P.1.70.000319
S6V6FGttTtt11P.20.000187
S6V6FGttTtt11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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