CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V622del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622deldelGTT---2626123426-23428

Details of the mutation V622del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622delGTT---2626All0.000005
S622V622delGTT---77B.1.1.70.000006
S622V622delGTT---33AY.40.000005
S622V622delGTT---22AY.430.000009
S622V622delGTT---22B.10.000018
S622V622delGTT---22B.1.1.4340.000697
S622V622delGTT---11AY.160.00038
S622V622delGTT---11AY.380.000499
S622V622delGTT---11AY.39.10.00004
S622V622delGTT---11AY.4.20.000022
S622V622delGTT---11B.1.160.210.020408
S622V622delGTT---11B.1.20.000009
S622V622delGTT---11B.1.617.20.000004
S622V622delGTT---11B.1.6200.000946
S622V622delGTT---11B.100.008264
S622V622delGTT---11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.