CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V622V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622VsyngtTgtA3321840.55421723426-23428
S622V622VsyngtTgtC3321330.40060223426-23428
S622V622VsyngtTgtG332150.045180723426-23428

Details of the mutation V622V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622VgtTgtA184332All0.000035
S622V622VgtTgtC133332All0.000025
S622V622VgtTgtG15332All0.000003
S622V622VgtTgtA99101B.1.1600.003088
S622V622VgtTgtC1101B.1.1600.000031
S622V622VgtTgtG1101B.1.1600.000031
S622V622VgtTgtA3436B.1.1770.000448
S622V622VgtTgtC236B.1.1770.000026
S622V622VgtTgtA2929AY.360.004298
S622V622VgtTgtC1718B.1.617.20.000064
S622V622VgtTgtA118B.1.617.20.000004
S622V622VgtTgtC1414AY.430.000062
S622V622VgtTgtC712AY.40.000011
S622V622VgtTgtA412AY.40.000006
S622V622VgtTgtG112AY.40.000002
S622V622VgtTgtC1112B.1.1.70.00001
S622V622VgtTgtG112B.1.1.70.000001
S622V622VgtTgtC1111B.1.5250.001245
S622V622VgtTgtC99B.1.1.3170.003705
S622V622VgtTgtG88B.1.2430.000557
S622V622VgtTgtC77B.1.20.000062
S622V622VgtTgtC46AY.250.000024
S622V622VgtTgtA26AY.250.000012
S622V622VgtTgtC56B.1.10.000091
S622V622VgtTgtG16B.1.10.000018
S622V622VgtTgtC36C.370.000348
S622V622VgtTgtA36C.370.000348
S622V622VgtTgtC44AY.1030.000025
S622V622VgtTgtC44B.10.000037
S622V622VgtTgtC44P.1.140.000191
S622V622VgtTgtA23AY.440.000012
S622V622VgtTgtC13AY.440.000006
S622V622VgtTgtC33B.1.4290.000071
S622V622VgtTgtA13P.10.000016
S622V622VgtTgtG13P.10.000016
S622V622VgtTgtC13P.10.000016
S622V622VgtTgtC33P.1.70.000958
S622V622VgtTgtA22A.2.50.000998
S622V622VgtTgtC22AY.1070.000932
S622V622VgtTgtC22AY.1210.000271
S622V622VgtTgtC22AY.4.20.000043
S622V622VgtTgtC110.055556
S622V622VgtTgtG11AY.10.000396
S622V622VgtTgtC11AY.1000.000046
S622V622VgtTgtC11AY.1020.000027
S622V622VgtTgtC11AY.290.000016
S622V622VgtTgtC11AY.30.00001
S622V622VgtTgtC11AY.380.000499
S622V622VgtTgtA11AY.390.000025
S622V622VgtTgtC11AY.460.000104
S622V622VgtTgtC11AY.46.40.000165
S622V622VgtTgtC11AY.50.000021
S622V622VgtTgtA11AY.60.000041
S622V622VgtTgtA11AY.730.000665
S622V622VgtTgtC11AY.9.10.000084
S622V622VgtTgtC11AY.98.10.000048
S622V622VgtTgtC11AY.990.001049
S622V622VgtTgtG11B.1.1.2940.001266
S622V622VgtTgtC11B.1.1.4160.000905
S622V622VgtTgtA11B.1.160.150.00495
S622V622VgtTgtA11B.1.177.30.007634
S622V622VgtTgtA11B.1.177.560.000668
S622V622VgtTgtA11B.1.36.180.00042
S622V622VgtTgtC11B.1.5690.014493
S622V622VgtTgtC11B.1.6210.000089
S622V622VgtTgtC11B.1.6370.000073

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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