CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V622L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622LnonsynGttCtt2482450.98790323426-23428
S622V622LnonsynGtTTtA24820.0080645223426-23428
S622V622LnonsynGtTCtC24810.0040322623426-23428

Details of the mutation V622L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622LGttCtt245248All0.000047
S622V622LGtTTtA2248All0
S622V622LGtTCtC1248All0
S622V622LGttCtt118118B.1.1.70.000106
S622V622LGttCtt1919B.1.4270.000959
S622V622LGttCtt1313AY.40.00002
S622V622LGttCtt1313B.1.4290.000306
S622V622LGttCtt1010AY.440.000061
S622V622LGttCtt99B.10.000082
S622V622LGttCtt66B.1.177.460.00551
S622V622LGttCtt55B.1.3350.051546
S622V622LGttCtt55B.1.617.20.000019
S622V622LGttCtt44P.1.140.000191
S622V622LGttCtt33AY.230.000209
S622V622LGttCtt33AY.430.000013
S622V622LGttCtt33B.1.20.000026
S622V622LGttCtt33B.1.2410.002435
S622V622LGttCtt33B.1.466.20.001174
S622V622LGttCtt120.055556
S622V622LGtTCtC120.055556
S622V622LGttCtt22AY.1190.000071
S622V622LGttCtt22B0.000256
S622V622LGttCtt22B.1.10.000036
S622V622LGttCtt22B.1.110.30.001437
S622V622LGtTTtA22B.1.1770.000026
S622V622LGttCtt22B.1.177.500.00939
S622V622LGttCtt22B.1.2210.000142
S622V622LGttCtt22B.1.6370.000146
S622V622LGttCtt11AY.1030.000006
S622V622LGttCtt11AY.250.000006
S622V622LGttCtt11AY.4.20.000022
S622V622LGttCtt11AY.5.40.000277
S622V622LGttCtt11AY.930.000273
S622V622LGttCtt11AY.98.10.000048
S622V622LGttCtt11B.1.1.2140.000055
S622V622LGttCtt11B.1.1.2200.001859
S622V622LGttCtt11B.1.1430.021277
S622V622LGttCtt11B.1.177.80.000752
S622V622LGttCtt11C.370.000116
S622V622LGttCtt11Q.10.000126
S622V622LGttCtt11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.