CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V622F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S622V622FnonsynGttTtt833183300.9998823426-23428
S622V622FnonsynGtTTtC833110.00012003423426-23428

Details of the mutation V622F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S622V622FGttTtt83308331All0.001593
S622V622FGtTTtC18331All0
S622V622FGttTtt43814381B.1.1.70.003922
S622V622FGttTtt466466B.1.617.20.001755
S622V622FGttTtt461461B.1.1.370.08891
S622V622FGttTtt440440AY.40.000685
S622V622FGttTtt171171AY.290.002697
S622V622FGttTtt167167AY.440.001016
S622V622FGttTtt145145AY.430.000642
S622V622FGttTtt145145AY.930.039596
S622V622FGttTtt133133B.1.20.001171
S622V622FGttTtt9898AY.1030.000608
S622V622FGttTtt9393AY.250.000559
S622V622FGttTtt6464AY.260.001812
S622V622FGttTtt6464AY.46.60.004621
S622V622FGttTtt6363B.1.3510.001873
S622V622FGttTtt6262B.1.1.10.020255
S622V622FGttTtt5858B.10.000531
S622V622FGttTtt5050B.1.4290.001176
S622V622FGttTtt4848AY.30.000477
S622V622FGttTtt4747AY.390.001161
S622V622FGttTtt4747B.1.10.000853
S622V622FGttTtt4545B.1.1770.000593
S622V622FGttTtt3636AY.1170.003043
S622V622FGttTtt3434AY.170.278689
S622V622FGttTtt3333AY.460.003435
S622V622FGttTtt3232B.1.3910.036077
S622V622FGttTtt2929B.1.360.004231
S622V622FGttTtt2828AY.420.001126
S622V622FGttTtt2828B.1.1.500.019009
S622V622FGttTtt2626B.1.5260.000611
S622V622FGttTtt2626P.10.00041
S622V622FGttTtt2525AY.470.000778
S622V622FGttTtt2525AY.50.000516
S622V622FGttTtt2424A.210.066482
S622V622FGttTtt2323AY.1020.00061
S622V622FGttTtt2323B.1.2430.0016
S622V622FGttTtt2222AY.200.000855
S622V622FGttTtt2222AY.980.001738
S622V622FGttTtt1717AY.330.001135
S622V622FGttTtt1616AY.180.161616
S622V622FGttTtt1616B.1.1.5190.000635
S622V622FGttTtt1515B.1.1.2620.227273
S622V622FGttTtt1414AY.39.10.000555
S622V622FGttTtt1414P.1.40.013672
S622V622FGttTtt1010AY.4.20.000217
S622V622FGttTtt1010AY.900.006845
S622V622FGttTtt1010B.1.177.730.005663
S622V622FGttTtt1010B.1.2580.000665
S622V622FGttTtt1010B.1.258.170.00104
S622V622FGttTtt1010B.1.3850.106383
S622V622FGttTtt99AY.99.20.000829
S622V622FGttTtt99B.1.1.3070.022785
S622V622FGttTtt99B.1.3980.026786
S622V622FGttTtt88AY.1000.000368
S622V622FGttTtt88AY.1180.000501
S622V622FGttTtt88B.1.3490.005718
S622V622FGttTtt88B.1.3690.002282
S622V622FGttTtt88B.1.6280.002819
S622V622FGttTtt88R.10.00072
S622V622FGttTtt77AY.1190.000247
S622V622FGttTtt77AY.230.000488
S622V622FGttTtt77AZ.40.02349
S622V622FGttTtt77B.1.1.3060.003069
S622V622FGttTtt66AY.1060.002009
S622V622FGttTtt66AY.340.000582
S622V622FGttTtt66AY.4.50.000645
S622V622FGttTtt66AY.450.00073
S622V622FGttTtt66B.1.1.3520.1875
S622V622FGttTtt66B.1.3710.006734
S622V622FGttTtt66B.1.4270.000303
S622V622FGttTtt66B.1.5960.000523
S622V622FGttTtt55AY.1200.000186
S622V622FGttTtt55B0.000639
S622V622FGttTtt55B.1.1.2220.00102
S622V622FGttTtt55B.1.1.3250.128205
S622V622FGttTtt55B.1.1.390.002548
S622V622FGttTtt55B.1.177.520.008787
S622V622FGttTtt55B.1.4060.030303
S622V622FGttTtt55B.1.5880.00455
S622V622FGttTtt55B.1.5900.022727
S622V622FGttTtt55B.1.5950.001305
S622V622FGttTtt44A.2.5.30.041237
S622V622FGttTtt44AY.120.2.10.001993
S622V622FGttTtt44AY.29.10.000882
S622V622FGttTtt44AY.350.000932
S622V622FGttTtt44AY.370.001264
S622V622FGttTtt44AY.590.002119
S622V622FGttTtt44AY.680.001095
S622V622FGttTtt44AY.98.10.000194
S622V622FGttTtt44B.1.1.270.022599
S622V622FGttTtt44B.1.1.50.033333
S622V622FGttTtt44B.1.1600.000125
S622V622FGttTtt44B.1.3670.00317
S622V622FGttTtt44B.1.4090.003125
S622V622FGttTtt44B.1.4690.01444
S622V622FGttTtt44B.1.5580.018265
S622V622FGttTtt44P.1.70.001277
S622V622FGttTtt44Q.80.00066
S622V622FGttTtt230.111111
S622V622FGtTTtC130.055556
S622V622FGttTtt33A0.001161
S622V622FGttTtt33AY.1140.000693
S622V622FGttTtt33AY.16.10.00141
S622V622FGttTtt33AY.270.000194
S622V622FGttTtt33AY.280.005671
S622V622FGttTtt33AY.46.20.001906
S622V622FGttTtt33AY.46.40.000494
S622V622FGttTtt33AY.610.000314
S622V622FGttTtt33AY.750.000168
S622V622FGttTtt33B.1.1.3180.000905
S622V622FGttTtt33B.1.1.3480.002389
S622V622FGttTtt33B.1.438.10.000322
S622V622FGttTtt33B.1.5250.000339
S622V622FGttTtt33B.1.6090.001438
S622V622FGttTtt33B.1.6190.002613
S622V622FGttTtt33B.1.6210.000266
S622V622FGttTtt33P.20.00056
S622V622FGttTtt22AY.1130.000285
S622V622FGttTtt22AY.210.003795
S622V622FGttTtt22AY.320.001065
S622V622FGttTtt22AY.34.10.00102
S622V622FGttTtt22AY.400.001929
S622V622FGttTtt22AY.5.40.000553
S622V622FGttTtt22AY.510.001818
S622V622FGttTtt22AY.530.000575
S622V622FGttTtt22AY.540.000191
S622V622FGttTtt22AY.7.10.000225
S622V622FGttTtt22AY.740.000231
S622V622FGttTtt22AY.9.20.000073
S622V622FGttTtt22B.1.1.280.000622
S622V622FGttTtt22B.1.1.340.026316
S622V622FGttTtt22B.1.1.3640.133333
S622V622FGttTtt22B.1.1.3980.006452
S622V622FGttTtt22B.1.1690.029851
S622V622FGttTtt22B.1.177.100.001756
S622V622FGttTtt22B.1.177.570.000562
S622V622FGttTtt22B.1.177.600.000437
S622V622FGttTtt22B.1.177.810.000379
S622V622FGttTtt22B.1.2210.000142
S622V622FGttTtt22B.1.351.20.000605
S622V622FGttTtt22B.1.3990.003868
S622V622FGttTtt22B.1.4200.020833
S622V622FGttTtt22B.1.4250.005988
S622V622FGttTtt22B.1.4560.006536
S622V622FGttTtt22B.1.5470.04878
S622V622FGttTtt22B.1.617.10.000258
S622V622FGttTtt22B.110.010256
S622V622FGttTtt22C.300.003454
S622V622FGttTtt22C.360.001821
S622V622FGttTtt22P.1.140.000096
S622V622FGttTtt22P.30.00319
S622V622FGttTtt22Q.10.000253
S622V622FGttTtt11A.20.000662
S622V622FGttTtt11AD.20.000219
S622V622FGttTtt11AE.10.011364
S622V622FGttTtt11AY.1050.000643
S622V622FGttTtt11AY.1090.00074
S622V622FGttTtt11AY.1100.000113
S622V622FGttTtt11AY.1160.000287
S622V622FGttTtt11AY.160.00038
S622V622FGttTtt11AY.20.000356
S622V622FGttTtt11AY.3.10.000085
S622V622FGttTtt11AY.300.000396
S622V622FGttTtt11AY.380.000499
S622V622FGttTtt11AY.4.2.10.000149
S622V622FGttTtt11AY.410.000294
S622V622FGttTtt11AY.46.50.000198
S622V622FGttTtt11AY.480.000465
S622V622FGttTtt11AY.550.000917
S622V622FGttTtt11AY.640.000595
S622V622FGttTtt11AY.660.00107
S622V622FGttTtt11AY.690.000187
S622V622FGttTtt11AY.7.20.000559
S622V622FGttTtt11AY.700.000209
S622V622FGttTtt11AY.710.000475
S622V622FGttTtt11AY.720.001361
S622V622FGttTtt11AY.730.000665
S622V622FGttTtt11AY.75.10.00018
S622V622FGttTtt11AY.880.000884
S622V622FGttTtt11AY.90.000068
S622V622FGttTtt11AY.940.000443
S622V622FGttTtt11AZ.20.000821
S622V622FGttTtt11B.1.1.1210.002427
S622V622FGttTtt11B.1.1.1760.000439
S622V622FGttTtt11B.1.1.1870.00885
S622V622FGttTtt11B.1.1.2140.000055
S622V622FGttTtt11B.1.1.2200.001859
S622V622FGttTtt11B.1.1.250.000569
S622V622FGttTtt11B.1.1.3110.000358
S622V622FGttTtt11B.1.1.3370.003597
S622V622FGttTtt11B.1.1.3510.002793
S622V622FGttTtt11B.1.1.3690.000446
S622V622FGttTtt11B.1.1.3890.006061
S622V622FGttTtt11B.1.1.5260.003546
S622V622FGttTtt11B.1.1.570.011494
S622V622FGttTtt11B.1.1.700.000341
S622V622FGttTtt11B.1.1.750.010638
S622V622FGttTtt11B.1.1110.001175
S622V622FGttTtt11B.1.1470.000756
S622V622FGttTtt11B.1.1490.003425
S622V622FGttTtt11B.1.177.120.000152
S622V622FGttTtt11B.1.177.210.000076
S622V622FGttTtt11B.1.177.230.003236
S622V622FGttTtt11B.1.177.580.001332
S622V622FGttTtt11B.1.177.70.000165
S622V622FGttTtt11B.1.177.720.00339
S622V622FGttTtt11B.1.177.820.000477
S622V622FGttTtt11B.1.177.860.000183
S622V622FGttTtt11B.1.2010.005682
S622V622FGttTtt11B.1.2060.000816
S622V622FGttTtt11B.1.2230.002778
S622V622FGttTtt11B.1.2370.004975
S622V622FGttTtt11B.1.2390.001221
S622V622FGttTtt11B.1.2870.030303
S622V622FGttTtt11B.1.2890.00266
S622V622FGttTtt11B.1.3110.000275
S622V622FGttTtt11B.1.3560.001727
S622V622FGttTtt11B.1.36.10.00114
S622V622FGttTtt11B.1.36.290.000517
S622V622FGttTtt11B.1.36.360.000602
S622V622FGttTtt11B.1.3960.000706
S622V622FGttTtt11B.1.4040.001302
S622V622FGttTtt11B.1.4110.003704
S622V622FGttTtt11B.1.4160.001269
S622V622FGttTtt11B.1.4220.000812
S622V622FGttTtt11B.1.4280.00102
S622V622FGttTtt11B.1.4480.002625
S622V622FGttTtt11B.1.466.20.000391
S622V622FGttTtt11B.1.4990.00105
S622V622FGttTtt11B.1.5240.001406
S622V622FGttTtt11B.1.5280.047619
S622V622FGttTtt11B.1.5460.003704
S622V622FGttTtt11B.1.5510.00129
S622V622FGttTtt11B.1.5600.00463
S622V622FGttTtt11B.1.5650.00081
S622V622FGttTtt11B.1.5760.000907
S622V622FGttTtt11B.1.5770.000687
S622V622FGttTtt11B.1.5850.027778
S622V622FGttTtt11B.1.5890.007576
S622V622FGttTtt11B.1.6270.00202
S622V622FGttTtt11B.1.6370.000073
S622V622FGttTtt11B.560.028571
S622V622FGttTtt11B.6.60.000889
S622V622FGttTtt11C.140.004329
S622V622FGttTtt11C.180.002591
S622V622FGttTtt11C.37.10.002618
S622V622FGttTtt11D.20.000075
S622V622FGttTtt11D.50.004975
S622V622FGttTtt11N.30.005814
S622V622FGttTtt11P.1.10.000318
S622V622FGttTtt11P.1.120.000484
S622V622FGttTtt11P.1.170.000162
S622V622FGttTtt11P.1.90.004808
S622V622FGttTtt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.