CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 367 | V367L | nonsyn | Gtc | Ctc | 3246 | 3241 | 0.99846 | 22661-22663 | |
S | 367 | V367L | nonsyn | GtC | CtA | 3246 | 4 | 0.00123229 | 22661-22663 | |
S | 367 | V367L | nonsyn | GtC | CtT | 3246 | 1 | 0.000308071 | 22661-22663 |
Details of the mutation V367L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 367 | V367L | Gtc | Ctc | 3241 | 3246 | All | 0.00062 |
S | 367 | V367L | GtC | CtA | 4 | 3246 | All | 0.000001 |
S | 367 | V367L | GtC | CtT | 1 | 3246 | All | 0 |
S | 367 | V367L | Gtc | Ctc | 1760 | 1761 | AY.37 | 0.556258 |
S | 367 | V367L | GtC | CtT | 1 | 1761 | AY.37 | 0.000316 |
S | 367 | V367L | Gtc | Ctc | 884 | 884 | B.1.1.7 | 0.000791 |
S | 367 | V367L | Gtc | Ctc | 115 | 115 | B.1.617.2 | 0.000433 |
S | 367 | V367L | Gtc | Ctc | 81 | 81 | AY.4 | 0.000126 |
S | 367 | V367L | Gtc | Ctc | 49 | 49 | B.1.2 | 0.000431 |
S | 367 | V367L | Gtc | Ctc | 34 | 34 | AY.44 | 0.000207 |
S | 367 | V367L | Gtc | Ctc | 32 | 32 | AY.43 | 0.000142 |
S | 367 | V367L | Gtc | Ctc | 23 | 23 | AY.3 | 0.000229 |
S | 367 | V367L | Gtc | Ctc | 22 | 22 | AY.25 | 0.000132 |
S | 367 | V367L | Gtc | Ctc | 13 | 13 | AY.20 | 0.000505 |
S | 367 | V367L | Gtc | Ctc | 13 | 13 | B.1.177 | 0.000171 |
S | 367 | V367L | Gtc | Ctc | 12 | 12 | AY.29 | 0.000189 |
S | 367 | V367L | Gtc | Ctc | 10 | 10 | AY.4.2 | 0.000217 |
S | 367 | V367L | Gtc | Ctc | 10 | 10 | AY.47 | 0.000311 |
S | 367 | V367L | Gtc | Ctc | 10 | 10 | P.1.14 | 0.000478 |
S | 367 | V367L | Gtc | Ctc | 10 | 10 | Q.8 | 0.001649 |
S | 367 | V367L | Gtc | Ctc | 9 | 9 | AY.103 | 0.000056 |
S | 367 | V367L | Gtc | Ctc | 8 | 8 | AY.13 | 0.001288 |
S | 367 | V367L | Gtc | Ctc | 8 | 8 | P.1 | 0.000126 |
S | 367 | V367L | Gtc | Ctc | 7 | 7 | C.37 | 0.000812 |
S | 367 | V367L | Gtc | Ctc | 5 | 6 | B.1.1 | 0.000091 |
S | 367 | V367L | GtC | CtA | 1 | 6 | B.1.1 | 0.000018 |
S | 367 | V367L | Gtc | Ctc | 6 | 6 | B.1.429 | 0.000141 |
S | 367 | V367L | Gtc | Ctc | 5 | 5 | AY.23 | 0.000349 |
S | 367 | V367L | Gtc | Ctc | 5 | 5 | AY.46 | 0.00052 |
S | 367 | V367L | Gtc | Ctc | 5 | 5 | AY.65 | 0.002665 |
S | 367 | V367L | Gtc | Ctc | 5 | 5 | AY.75 | 0.00028 |
S | 367 | V367L | Gtc | Ctc | 5 | 5 | Q.3 | 0.000725 |
S | 367 | V367L | Gtc | Ctc | 4 | 4 | AY.16 | 0.001519 |
S | 367 | V367L | Gtc | Ctc | 3 | 4 | B.1 | 0.000027 |
S | 367 | V367L | GtC | CtA | 1 | 4 | B.1 | 0.000009 |
S | 367 | V367L | Gtc | Ctc | 4 | 4 | B.1.36 | 0.000584 |
S | 367 | V367L | Gtc | Ctc | 3 | 3 | AY.102 | 0.00008 |
S | 367 | V367L | Gtc | Ctc | 3 | 3 | AY.39 | 0.000074 |
S | 367 | V367L | Gtc | Ctc | 3 | 3 | AY.5 | 0.000062 |
S | 367 | V367L | Gtc | Ctc | 3 | 3 | AY.98 | 0.000237 |
S | 367 | V367L | Gtc | Ctc | 3 | 3 | B.1.571 | 0.029126 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | A.2.5 | 0.000998 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.26 | 0.000057 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.33 | 0.000134 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.39.1 | 0.000079 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.45 | 0.000243 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.54 | 0.000191 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.60 | 0.001876 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | AY.9.2 | 0.000073 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | B.1.1.216 | 0.001781 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | B.1.1.294 | 0.002532 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | B.1.1.33 | 0.000842 |
S | 367 | V367L | Gtc | Ctc | 2 | 2 | C.38 | 0.016129 |
S | 367 | V367L | Gtc | Ctc | 1 | 2 | P.2 | 0.000187 |
S | 367 | V367L | GtC | CtA | 1 | 2 | P.2 | 0.000187 |
S | 367 | V367L | GtC | CtA | 1 | 1 | A | 0.000387 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.100 | 0.000046 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.110 | 0.000113 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.111 | 0.000183 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.119 | 0.000035 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.120 | 0.000037 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.14 | 0.000088 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.36 | 0.000148 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.4.5 | 0.000107 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.46.6 | 0.000072 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.61 | 0.000105 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.64 | 0.000595 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.7 | 0.000196 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.71 | 0.000475 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.73 | 0.000665 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.74 | 0.000116 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.75.1 | 0.00018 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.9.1 | 0.000084 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.92 | 0.000287 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.98.1 | 0.000048 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | AY.99.2 | 0.000092 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B | 0.000128 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.1.222 | 0.000204 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.1.28 | 0.000311 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.1.284 | 0.000107 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.1.417 | 0.002703 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.1.50 | 0.000679 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.169 | 0.014925 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.177.80 | 0.001912 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.243 | 0.00007 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.258.17 | 0.000104 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.258.7 | 0.001912 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.36.29 | 0.000517 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.389 | 0.001002 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.438.1 | 0.000107 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.456 | 0.003268 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.466.2 | 0.000391 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.547 | 0.02439 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.596 | 0.000087 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | B.1.630 | 0.005236 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | L.1 | 0.001905 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | P.1.12 | 0.000484 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | P.7 | 0.004367 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | Q.1 | 0.000126 |
S | 367 | V367L | Gtc | Ctc | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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