CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V289I

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S289V289InonsynGtaAta3048430484122427-22429

Details of the mutation V289I within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S289V289IGtaAta3048430484All0.00583
S289V289IGtaAta2885928859AY.470.897664
S289V289IGtaAta352352AY.750.01972
S289V289IGtaAta303303B.1.617.20.001141
S289V289IGtaAta282282B.1.1.70.000252
S289V289IGtaAta8787B.1.1.3480.069268
S289V289IGtaAta7777B.1.3690.021962
S289V289IGtaAta5656AY.75.10.010097
S289V289IGtaAta4949AY.440.000298
S289V289IGtaAta4040B.1.10.000726
S289V289IGtaAta2626AY.620.011329
S289V289IGtaAta2424AY.610.002515
S289V289IGtaAta2323AY.430.000102
S289V289IGtaAta2222AY.1030.000137
S289V289IGtaAta2222AY.40.000034
S289V289IGtaAta1616AY.250.000096
S289V289IGtaAta1616B.10.000147
S289V289IGtaAta1515AY.410.004409
S289V289IGtaAta1212B.1.20.000106
S289V289IGtaAta99AY.1020.000239
S289V289IGtaAta99B.1.1770.000119
S289V289IGtaAta99B.1.2430.000626
S289V289IGtaAta88AY.930.002185
S289V289IGtaAta77AY.1170.000592
S289V289IGtaAta77AY.120.20.008997
S289V289IGtaAta66AY.30.00006
S289V289IGtaAta66AY.450.00073
S289V289IGtaAta66B.1.1060.1875
S289V289IGtaAta55AY.260.000142
S289V289IGtaAta55AY.540.000477
S289V289IGtaAta44AY.390.000099
S289V289IGtaAta44AY.39.10.000158
S289V289IGtaAta44AY.710.0019
S289V289IGtaAta44B.1.416.10.00625
S289V289IGtaAta44B.1.5640.001704
S289V289IGtaAta33AY.1090.002219
S289V289IGtaAta33AY.1100.000338
S289V289IGtaAta33AY.1190.000106
S289V289IGtaAta33AY.330.0002
S289V289IGtaAta33AY.50.000062
S289V289IGtaAta33AY.9.20.00011
S289V289IGtaAta33B0.000383
S289V289IGtaAta33B.1.1.2690.00406
S289V289IGtaAta33B.1.3510.000089
S289V289IGtaAta33B.1.6210.000266
S289V289IGtaAta33P.1.140.000143
S289V289IGtaAta220.111111
S289V289IGtaAta22AY.1000.000092
S289V289IGtaAta22AY.1140.000462
S289V289IGtaAta22AY.1180.000125
S289V289IGtaAta22AY.1200.000074
S289V289IGtaAta22AY.190.002281
S289V289IGtaAta22AY.240.000862
S289V289IGtaAta22AY.34.10.00102
S289V289IGtaAta22AY.46.20.001271
S289V289IGtaAta22AY.60.000082
S289V289IGtaAta22AY.950.001522
S289V289IGtaAta22B.1.177.820.000955
S289V289IGtaAta22B.1.2580.000133
S289V289IGtaAta22B.1.4270.000101
S289V289IGtaAta22B.1.6280.000705
S289V289IGtaAta11AY.100.00053
S289V289IGtaAta11AY.1050.000643
S289V289IGtaAta11AY.1060.000335
S289V289IGtaAta11AY.1080.001103
S289V289IGtaAta11AY.1210.000135
S289V289IGtaAta11AY.16.10.00047
S289V289IGtaAta11AY.180.010101
S289V289IGtaAta11AY.200.000039
S289V289IGtaAta11AY.23.10.000417
S289V289IGtaAta11AY.290.000016
S289V289IGtaAta11AY.29.10.000221
S289V289IGtaAta11AY.350.000233
S289V289IGtaAta11AY.380.000499
S289V289IGtaAta11AY.4.20.000022
S289V289IGtaAta11AY.460.000104
S289V289IGtaAta11AY.5.40.000277
S289V289IGtaAta11AY.530.000288
S289V289IGtaAta11AY.550.000917
S289V289IGtaAta11AY.560.001605
S289V289IGtaAta11AY.590.00053
S289V289IGtaAta11AY.650.000533
S289V289IGtaAta11AY.670.000464
S289V289IGtaAta11AY.680.000274
S289V289IGtaAta11AY.740.000116
S289V289IGtaAta11AY.80.000606
S289V289IGtaAta11AY.840.000437
S289V289IGtaAta11AY.880.000884
S289V289IGtaAta11AY.90.000068
S289V289IGtaAta11AY.900.000684
S289V289IGtaAta11AY.990.001049
S289V289IGtaAta11B.1.1.4420.018519
S289V289IGtaAta11B.1.1.5230.001563
S289V289IGtaAta11B.1.1570.002985
S289V289IGtaAta11B.1.177.120.000152
S289V289IGtaAta11B.1.2400.000216
S289V289IGtaAta11B.1.438.10.000107
S289V289IGtaAta11B.1.5750.000303
S289V289IGtaAta11B.400.000364
S289V289IGtaAta11B.6.60.000889
S289V289IGtaAta11C.36.30.000567
S289V289IGtaAta11P.10.000016
S289V289IGtaAta11P.1.100.000269
S289V289IGtaAta11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.