CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
S | 213 | V213L | nonsyn | Gtg | Ttg | 3000 | 2913 | 0.971 | 22199-22201 | |
S | 213 | V213L | nonsyn | Gtg | Ctg | 3000 | 83 | 0.0276667 | 22199-22201 | |
S | 213 | V213L | nonsyn | GtG | CtA | 3000 | 3 | 0.001 | 22199-22201 | |
S | 213 | V213L | nonsyn | GtG | CtT | 3000 | 1 | 0.000333333 | 22199-22201 |
Details of the mutation V213L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
S | 213 | V213L | Gtg | Ttg | 2913 | 3000 | All | 0.000557 |
S | 213 | V213L | Gtg | Ctg | 83 | 3000 | All | 0.000016 |
S | 213 | V213L | GtG | CtA | 3 | 3000 | All | 0.000001 |
S | 213 | V213L | GtG | CtT | 1 | 3000 | All | 0 |
S | 213 | V213L | Gtg | Ttg | 565 | 611 | AY.4 | 0.000879 |
S | 213 | V213L | Gtg | Ctg | 46 | 611 | AY.4 | 0.000072 |
S | 213 | V213L | Gtg | Ttg | 447 | 449 | AY.43 | 0.00198 |
S | 213 | V213L | Gtg | Ctg | 1 | 449 | AY.43 | 0.000004 |
S | 213 | V213L | GtG | CtA | 1 | 449 | AY.43 | 0.000004 |
S | 213 | V213L | Gtg | Ttg | 288 | 293 | B.1.1.7 | 0.000258 |
S | 213 | V213L | Gtg | Ctg | 3 | 293 | B.1.1.7 | 0.000003 |
S | 213 | V213L | GtG | CtA | 2 | 293 | B.1.1.7 | 0.000002 |
S | 213 | V213L | Gtg | Ttg | 264 | 270 | B.1.1.214 | 0.014641 |
S | 213 | V213L | Gtg | Ctg | 6 | 270 | B.1.1.214 | 0.000333 |
S | 213 | V213L | Gtg | Ttg | 257 | 257 | AY.25 | 0.001546 |
S | 213 | V213L | Gtg | Ttg | 128 | 138 | B.1.617.2 | 0.000482 |
S | 213 | V213L | Gtg | Ctg | 10 | 138 | B.1.617.2 | 0.000038 |
S | 213 | V213L | Gtg | Ttg | 131 | 131 | C.3 | 1 |
S | 213 | V213L | Gtg | Ttg | 94 | 94 | AY.6 | 0.003866 |
S | 213 | V213L | Gtg | Ttg | 62 | 62 | AY.5 | 0.00128 |
S | 213 | V213L | Gtg | Ttg | 61 | 61 | AY.44 | 0.000371 |
S | 213 | V213L | Gtg | Ttg | 46 | 46 | AY.9.2 | 0.00169 |
S | 213 | V213L | Gtg | Ttg | 34 | 34 | B.1.599 | 0.124088 |
S | 213 | V213L | Gtg | Ttg | 33 | 33 | P.1.14 | 0.001577 |
S | 213 | V213L | Gtg | Ttg | 29 | 30 | P.1 | 0.000457 |
S | 213 | V213L | Gtg | Ctg | 1 | 30 | P.1 | 0.000016 |
S | 213 | V213L | Gtg | Ttg | 29 | 29 | B.1 | 0.000266 |
S | 213 | V213L | Gtg | Ttg | 24 | 25 | B.1.1 | 0.000435 |
S | 213 | V213L | Gtg | Ctg | 1 | 25 | B.1.1 | 0.000018 |
S | 213 | V213L | Gtg | Ttg | 22 | 22 | AY.103 | 0.000137 |
S | 213 | V213L | Gtg | Ttg | 20 | 20 | B.1.1.316 | 0.018501 |
S | 213 | V213L | Gtg | Ttg | 19 | 19 | AY.46.4 | 0.003126 |
S | 213 | V213L | Gtg | Ttg | 19 | 19 | B.1.2 | 0.000167 |
S | 213 | V213L | Gtg | Ttg | 14 | 14 | AY.36 | 0.002075 |
S | 213 | V213L | Gtg | Ttg | 12 | 12 | B.1.142 | 0.034783 |
S | 213 | V213L | Gtg | Ttg | 12 | 12 | C.37 | 0.001393 |
S | 213 | V213L | Gtg | Ttg | 11 | 11 | AY.102 | 0.000292 |
S | 213 | V213L | Gtg | Ttg | 10 | 10 | AY.32 | 0.005325 |
S | 213 | V213L | Gtg | Ttg | 10 | 10 | AY.39 | 0.000247 |
S | 213 | V213L | Gtg | Ctg | 8 | 10 | B.1.1.28 | 0.00249 |
S | 213 | V213L | Gtg | Ttg | 1 | 10 | B.1.1.28 | 0.000311 |
S | 213 | V213L | GtG | CtT | 1 | 10 | B.1.1.28 | 0.000311 |
S | 213 | V213L | Gtg | Ttg | 8 | 8 | AY.120 | 0.000297 |
S | 213 | V213L | Gtg | Ttg | 8 | 8 | B.1.1.25 | 0.004548 |
S | 213 | V213L | Gtg | Ttg | 8 | 8 | B.1.1.519 | 0.000318 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | AY.113 | 0.000997 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | AY.119 | 0.000247 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | AY.3 | 0.00007 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | B.1.177 | 0.000092 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | B.1.526 | 0.000165 |
S | 213 | V213L | Gtg | Ttg | 7 | 7 | L.3 | 0.024823 |
S | 213 | V213L | Gtg | Ttg | 6 | 6 | AY.5.4 | 0.00166 |
S | 213 | V213L | Gtg | Ttg | 6 | 6 | B.1.1.458 | 0.25 |
S | 213 | V213L | Gtg | Ttg | 6 | 6 | B.1.627 | 0.012121 |
S | 213 | V213L | Gtg | Ttg | 5 | 5 | AY.45 | 0.000608 |
S | 213 | V213L | Gtg | Ttg | 5 | 5 | AY.54 | 0.000477 |
S | 213 | V213L | Gtg | Ttg | 5 | 5 | AY.61 | 0.000524 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | AY.121 | 0.000541 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | AY.16 | 0.001519 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | AY.26 | 0.000113 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | AY.4.5 | 0.00043 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | AY.42 | 0.000161 |
S | 213 | V213L | Gtg | Ttg | 3 | 4 | AY.47 | 0.000093 |
S | 213 | V213L | Gtg | Ctg | 1 | 4 | AY.47 | 0.000031 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | B.1.160 | 0.000125 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | B.1.243 | 0.000278 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | B.1.429 | 0.000094 |
S | 213 | V213L | Gtg | Ttg | 4 | 4 | B.1.628 | 0.001409 |
S | 213 | V213L | Gtg | Ctg | 4 | 4 | P.1.15 | 0.000929 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | AY.117 | 0.000254 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | AY.118 | 0.000188 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | AY.20 | 0.000117 |
S | 213 | V213L | Gtg | Ttg | 2 | 3 | AY.75 | 0.000112 |
S | 213 | V213L | Gtg | Ctg | 1 | 3 | AY.75 | 0.000056 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | AY.9 | 0.000203 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.1.70 | 0.001023 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.240 | 0.000647 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.241 | 0.002435 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.36 | 0.000438 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.602 | 0.019608 |
S | 213 | V213L | Gtg | Ttg | 3 | 3 | B.1.617.1 | 0.000387 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.33 | 0.000134 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.46 | 0.000208 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.51 | 0.001818 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.77 | 0.002255 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.8 | 0.001212 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.88 | 0.001768 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.92 | 0.000575 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.98 | 0.000158 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | AY.99.2 | 0.000184 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.1.258 | 0.006515 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.1.294 | 0.002532 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.1.33 | 0.000842 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.1.374 | 0.004751 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.139 | 0.001466 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.258 | 0.000133 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.351 | 0.000059 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.369 | 0.00057 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.396 | 0.001411 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.400 | 0.000858 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.560 | 0.009259 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.576 | 0.001813 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.595 | 0.000522 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.596 | 0.000174 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | B.1.609 | 0.000959 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | P.1.12 | 0.000968 |
S | 213 | V213L | Gtg | Ttg | 2 | 2 | P.2 | 0.000373 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | A.1 | 0.000282 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | A.2 | 0.000662 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.100 | 0.000046 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.110 | 0.000113 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.14 | 0.000088 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.29 | 0.000016 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.3.1 | 0.000085 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.39.1 | 0.00004 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.4.1 | 0.000737 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.5.3 | 0.000337 |
S | 213 | V213L | Gtg | Ctg | 1 | 1 | AY.56 | 0.001605 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.57 | 0.000656 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.68 | 0.000274 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.7 | 0.000196 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.7.1 | 0.000113 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.84 | 0.000437 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.9.1 | 0.000084 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | AY.91 | 0.00073 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B | 0.000128 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.101 | 0.01 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.176 | 0.000439 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.244 | 0.015385 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.267 | 0.010101 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.291 | 0.000742 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.398 | 0.003226 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.432 | 0.001266 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.1.526 | 0.003546 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.177.57 | 0.000281 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.177.7 | 0.000165 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.221 | 0.000071 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.234 | 0.000132 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.239 | 0.001221 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.311 | 0.000275 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.346 | 0.001311 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.351.3 | 0.000876 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.36.18 | 0.00042 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.370 | 0.008 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.411 | 0.003704 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.530 | 0.007143 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.564 | 0.000426 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.587 | 0.001898 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.620 | 0.000946 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.621 | 0.000089 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.1.625 | 0.002353 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | B.6.6 | 0.000889 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | P.1.1 | 0.000318 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | P.1.16 | 0.000374 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | P.1.7 | 0.000319 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | Q.4 | 0.000455 |
S | 213 | V213L | Gtg | Ttg | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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