CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V213L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S213V213LnonsynGtgTtg300029130.97122199-22201
S213V213LnonsynGtgCtg3000830.027666722199-22201
S213V213LnonsynGtGCtA300030.00122199-22201
S213V213LnonsynGtGCtT300010.00033333322199-22201

Details of the mutation V213L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S213V213LGtgTtg29133000All0.000557
S213V213LGtgCtg833000All0.000016
S213V213LGtGCtA33000All0.000001
S213V213LGtGCtT13000All0
S213V213LGtgTtg565611AY.40.000879
S213V213LGtgCtg46611AY.40.000072
S213V213LGtgTtg447449AY.430.00198
S213V213LGtgCtg1449AY.430.000004
S213V213LGtGCtA1449AY.430.000004
S213V213LGtgTtg288293B.1.1.70.000258
S213V213LGtgCtg3293B.1.1.70.000003
S213V213LGtGCtA2293B.1.1.70.000002
S213V213LGtgTtg264270B.1.1.2140.014641
S213V213LGtgCtg6270B.1.1.2140.000333
S213V213LGtgTtg257257AY.250.001546
S213V213LGtgTtg128138B.1.617.20.000482
S213V213LGtgCtg10138B.1.617.20.000038
S213V213LGtgTtg131131C.31
S213V213LGtgTtg9494AY.60.003866
S213V213LGtgTtg6262AY.50.00128
S213V213LGtgTtg6161AY.440.000371
S213V213LGtgTtg4646AY.9.20.00169
S213V213LGtgTtg3434B.1.5990.124088
S213V213LGtgTtg3333P.1.140.001577
S213V213LGtgTtg2930P.10.000457
S213V213LGtgCtg130P.10.000016
S213V213LGtgTtg2929B.10.000266
S213V213LGtgTtg2425B.1.10.000435
S213V213LGtgCtg125B.1.10.000018
S213V213LGtgTtg2222AY.1030.000137
S213V213LGtgTtg2020B.1.1.3160.018501
S213V213LGtgTtg1919AY.46.40.003126
S213V213LGtgTtg1919B.1.20.000167
S213V213LGtgTtg1414AY.360.002075
S213V213LGtgTtg1212B.1.1420.034783
S213V213LGtgTtg1212C.370.001393
S213V213LGtgTtg1111AY.1020.000292
S213V213LGtgTtg1010AY.320.005325
S213V213LGtgTtg1010AY.390.000247
S213V213LGtgCtg810B.1.1.280.00249
S213V213LGtgTtg110B.1.1.280.000311
S213V213LGtGCtT110B.1.1.280.000311
S213V213LGtgTtg88AY.1200.000297
S213V213LGtgTtg88B.1.1.250.004548
S213V213LGtgTtg88B.1.1.5190.000318
S213V213LGtgTtg77AY.1130.000997
S213V213LGtgTtg77AY.1190.000247
S213V213LGtgTtg77AY.30.00007
S213V213LGtgTtg77B.1.1770.000092
S213V213LGtgTtg77B.1.5260.000165
S213V213LGtgTtg77L.30.024823
S213V213LGtgTtg66AY.5.40.00166
S213V213LGtgTtg66B.1.1.4580.25
S213V213LGtgTtg66B.1.6270.012121
S213V213LGtgTtg55AY.450.000608
S213V213LGtgTtg55AY.540.000477
S213V213LGtgTtg55AY.610.000524
S213V213LGtgTtg44AY.1210.000541
S213V213LGtgTtg44AY.160.001519
S213V213LGtgTtg44AY.260.000113
S213V213LGtgTtg44AY.4.50.00043
S213V213LGtgTtg44AY.420.000161
S213V213LGtgTtg34AY.470.000093
S213V213LGtgCtg14AY.470.000031
S213V213LGtgTtg44B.1.1600.000125
S213V213LGtgTtg44B.1.2430.000278
S213V213LGtgTtg44B.1.4290.000094
S213V213LGtgTtg44B.1.6280.001409
S213V213LGtgCtg44P.1.150.000929
S213V213LGtgTtg33AY.1170.000254
S213V213LGtgTtg33AY.1180.000188
S213V213LGtgTtg33AY.200.000117
S213V213LGtgTtg23AY.750.000112
S213V213LGtgCtg13AY.750.000056
S213V213LGtgTtg33AY.90.000203
S213V213LGtgTtg33B.1.1.700.001023
S213V213LGtgTtg33B.1.2400.000647
S213V213LGtgTtg33B.1.2410.002435
S213V213LGtgTtg33B.1.360.000438
S213V213LGtgTtg33B.1.6020.019608
S213V213LGtgTtg33B.1.617.10.000387
S213V213LGtgTtg22AY.330.000134
S213V213LGtgTtg22AY.460.000208
S213V213LGtgTtg22AY.510.001818
S213V213LGtgTtg22AY.770.002255
S213V213LGtgTtg22AY.80.001212
S213V213LGtgTtg22AY.880.001768
S213V213LGtgTtg22AY.920.000575
S213V213LGtgTtg22AY.980.000158
S213V213LGtgTtg22AY.99.20.000184
S213V213LGtgTtg22B.1.1.2580.006515
S213V213LGtgTtg22B.1.1.2940.002532
S213V213LGtgTtg22B.1.1.330.000842
S213V213LGtgTtg22B.1.1.3740.004751
S213V213LGtgTtg22B.1.1390.001466
S213V213LGtgTtg22B.1.2580.000133
S213V213LGtgTtg22B.1.3510.000059
S213V213LGtgTtg22B.1.3690.00057
S213V213LGtgTtg22B.1.3960.001411
S213V213LGtgTtg22B.1.4000.000858
S213V213LGtgTtg22B.1.5600.009259
S213V213LGtgTtg22B.1.5760.001813
S213V213LGtgTtg22B.1.5950.000522
S213V213LGtgTtg22B.1.5960.000174
S213V213LGtgTtg22B.1.6090.000959
S213V213LGtgTtg22P.1.120.000968
S213V213LGtgTtg22P.20.000373
S213V213LGtgTtg11A.10.000282
S213V213LGtgTtg11A.20.000662
S213V213LGtgTtg11AY.1000.000046
S213V213LGtgTtg11AY.1100.000113
S213V213LGtgTtg11AY.140.000088
S213V213LGtgTtg11AY.290.000016
S213V213LGtgTtg11AY.3.10.000085
S213V213LGtgTtg11AY.39.10.00004
S213V213LGtgTtg11AY.4.10.000737
S213V213LGtgTtg11AY.5.30.000337
S213V213LGtgCtg11AY.560.001605
S213V213LGtgTtg11AY.570.000656
S213V213LGtgTtg11AY.680.000274
S213V213LGtgTtg11AY.70.000196
S213V213LGtgTtg11AY.7.10.000113
S213V213LGtgTtg11AY.840.000437
S213V213LGtgTtg11AY.9.10.000084
S213V213LGtgTtg11AY.910.00073
S213V213LGtgTtg11B0.000128
S213V213LGtgTtg11B.1.1.1010.01
S213V213LGtgTtg11B.1.1.1760.000439
S213V213LGtgTtg11B.1.1.2440.015385
S213V213LGtgTtg11B.1.1.2670.010101
S213V213LGtgTtg11B.1.1.2910.000742
S213V213LGtgTtg11B.1.1.3980.003226
S213V213LGtgTtg11B.1.1.4320.001266
S213V213LGtgTtg11B.1.1.5260.003546
S213V213LGtgTtg11B.1.177.570.000281
S213V213LGtgTtg11B.1.177.70.000165
S213V213LGtgTtg11B.1.2210.000071
S213V213LGtgTtg11B.1.2340.000132
S213V213LGtgTtg11B.1.2390.001221
S213V213LGtgTtg11B.1.3110.000275
S213V213LGtgTtg11B.1.3460.001311
S213V213LGtgTtg11B.1.351.30.000876
S213V213LGtgTtg11B.1.36.180.00042
S213V213LGtgTtg11B.1.3700.008
S213V213LGtgTtg11B.1.4110.003704
S213V213LGtgTtg11B.1.5300.007143
S213V213LGtgTtg11B.1.5640.000426
S213V213LGtgTtg11B.1.5870.001898
S213V213LGtgTtg11B.1.6200.000946
S213V213LGtgTtg11B.1.6210.000089
S213V213LGtgTtg11B.1.6250.002353
S213V213LGtgTtg11B.6.60.000889
S213V213LGtgTtg11P.1.10.000318
S213V213LGtgTtg11P.1.160.000374
S213V213LGtgTtg11P.1.70.000319
S213V213LGtgTtg11Q.40.000455
S213V213LGtgTtg11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.