CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = S : Mut = V1264V

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
S1264V1264VsyngtGgtT593957500.96817625352-25354
S1264V1264VsyngtGgtA59391680.028287625352-25354
S1264V1264VsyngtGgtC5939210.0035359525352-25354

Details of the mutation V1264V within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
S1264V1264VgtGgtT57505939All0.0011
S1264V1264VgtGgtA1685939All0.000032
S1264V1264VgtGgtC215939All0.000004
S1264V1264VgtGgtT16571659B.1.617.20.006239
S1264V1264VgtGgtC21659B.1.617.20.000008
S1264V1264VgtGgtT672682AY.40.001046
S1264V1264VgtGgtA10682AY.40.000016
S1264V1264VgtGgtT514532B.1.1.70.00046
S1264V1264VgtGgtA14532B.1.1.70.000013
S1264V1264VgtGgtC4532B.1.1.70.000004
S1264V1264VgtGgtT474476B.1.20.004174
S1264V1264VgtGgtC1476B.1.20.000009
S1264V1264VgtGgtA1476B.1.20.000009
S1264V1264VgtGgtT465465AY.250.002797
S1264V1264VgtGgtT224227AY.430.000992
S1264V1264VgtGgtA3227AY.430.000013
S1264V1264VgtGgtT118120B.1.1770.001554
S1264V1264VgtGgtC2120B.1.1770.000026
S1264V1264VgtGgtT108109AY.440.000657
S1264V1264VgtGgtA1109AY.440.000006
S1264V1264VgtGgtT107107AY.1020.002837
S1264V1264VgtGgtA7676AY.570.049869
S1264V1264VgtGgtT7373B.1.1.700.024898
S1264V1264VgtGgtT5758AY.30.000567
S1264V1264VgtGgtA158AY.30.00001
S1264V1264VgtGgtT5757B.1.2580.003793
S1264V1264VgtGgtT5353B.1.1.5190.002105
S1264V1264VgtGgtT5153B.1.2430.003549
S1264V1264VgtGgtA253B.1.2430.000139
S1264V1264VgtGgtT5052P.10.000788
S1264V1264VgtGgtA252P.10.000032
S1264V1264VgtGgtT4548AY.1030.000279
S1264V1264VgtGgtA348AY.1030.000019
S1264V1264VgtGgtT3643B.1.10.000653
S1264V1264VgtGgtA743B.1.10.000127
S1264V1264VgtGgtT3642B.10.00033
S1264V1264VgtGgtA542B.10.000046
S1264V1264VgtGgtC142B.10.000009
S1264V1264VgtGgtT4142B.1.1600.001279
S1264V1264VgtGgtA142B.1.1600.000031
S1264V1264VgtGgtT3740AY.390.000914
S1264V1264VgtGgtC240AY.390.000049
S1264V1264VgtGgtA140AY.390.000025
S1264V1264VgtGgtT4040AY.46.50.007937
S1264V1264VgtGgtT3939AY.530.011213
S1264V1264VgtGgtT3636B.1.5260.000846
S1264V1264VgtGgtT3131B.1.258.170.003223
S1264V1264VgtGgtT3030R.10.0027
S1264V1264VgtGgtA2828AY.46.60.002022
S1264V1264VgtGgtT2424AY.1200.000892
S1264V1264VgtGgtT2324B.1.4270.001161
S1264V1264VgtGgtA124B.1.4270.00005
S1264V1264VgtGgtT2020AY.4.20.000434
S1264V1264VgtGgtT2020B.1.6210.00177
S1264V1264VgtGgtT2020L.41
S1264V1264VgtGgtT1617B.1.3510.000476
S1264V1264VgtGgtC117B.1.3510.00003
S1264V1264VgtGgtT1616AY.860.013278
S1264V1264VgtGgtT1515AY.290.000237
S1264V1264VgtGgtT1515B.1.2210.001065
S1264V1264VgtGgtT1213AY.60.000494
S1264V1264VgtGgtA113AY.60.000041
S1264V1264VgtGgtT1212AY.1000.000552
S1264V1264VgtGgtT1212B.1.2340.001583
S1264V1264VgtGgtT1111A.210.030471
S1264V1264VgtGgtT1111AY.840.004812
S1264V1264VgtGgtT1111AY.99.20.001014
S1264V1264VgtGgtT1111B.1.5750.003337
S1264V1264VgtGgtT1010AY.200.000389
S1264V1264VgtGgtT1010P.1.170.001618
S1264V1264VgtGgtT99AY.1190.000318
S1264V1264VgtGgtT99AY.240.003879
S1264V1264VgtGgtT99AY.4.2.10.001341
S1264V1264VgtGgtT99AY.50.000186
S1264V1264VgtGgtT99AY.98.10.000436
S1264V1264VgtGgtT99B.1.1.1860.030928
S1264V1264VgtGgtT99B.1.1.280.002801
S1264V1264VgtGgtT99B.1.4090.007031
S1264V1264VgtGgtT99P.1.100.002425
S1264V1264VgtGgtT99P.1.20.010405
S1264V1264VgtGgtT99P.1.70.002874
S1264V1264VgtGgtT88AY.470.000249
S1264V1264VgtGgtT78B.1.1.2220.001428
S1264V1264VgtGgtA18B.1.1.2220.000204
S1264V1264VgtGgtT88B.1.1.330.003367
S1264V1264VgtGgtT88B.1.6370.000585
S1264V1264VgtGgtT88C.370.000929
S1264V1264VgtGgtT78D.20.000525
S1264V1264VgtGgtC18D.20.000075
S1264V1264VgtGgtT77AY.1130.000997
S1264V1264VgtGgtT77AY.330.000467
S1264V1264VgtGgtT67AY.460.000624
S1264V1264VgtGgtA17AY.460.000104
S1264V1264VgtGgtT77AY.46.40.001152
S1264V1264VgtGgtT77B.1.1.3060.003069
S1264V1264VgtGgtT77B.1.2060.00571
S1264V1264VgtGgtT66AY.130.000966
S1264V1264VgtGgtT66AY.140.000528
S1264V1264VgtGgtT56AY.450.000608
S1264V1264VgtGgtC16AY.450.000122
S1264V1264VgtGgtT66B.1.2400.001293
S1264V1264VgtGgtT66B.400.002186
S1264V1264VgtGgtT55AY.230.000349
S1264V1264VgtGgtT55AY.420.000201
S1264V1264VgtGgtT55B.1.1.250.002843
S1264V1264VgtGgtT55B.1.1.2910.003712
S1264V1264VgtGgtT55B.1.1.500.003394
S1264V1264VgtGgtT55B.1.177.110.008489
S1264V1264VgtGgtT35B.1.5960.000261
S1264V1264VgtGgtC25B.1.5960.000174
S1264V1264VgtGgtT55C.230.02907
S1264V1264VgtGgtT44AD.20.000876
S1264V1264VgtGgtT44AY.1180.000251
S1264V1264VgtGgtT44AY.34.10.00204
S1264V1264VgtGgtT44AY.580.00363
S1264V1264VgtGgtT44AY.610.000419
S1264V1264VgtGgtT44AY.7.10.000451
S1264V1264VgtGgtT34B.1.360.000438
S1264V1264VgtGgtA14B.1.360.000146
S1264V1264VgtGgtT44B.1.438.10.000429
S1264V1264VgtGgtT44P.1.80.019139
S1264V1264VgtGgtT33AY.1090.002219
S1264V1264VgtGgtT33AY.1100.000338
S1264V1264VgtGgtT33AY.1210.000406
S1264V1264VgtGgtT33AY.160.001139
S1264V1264VgtGgtT33AY.9.20.00011
S1264V1264VgtGgtT33AY.990.003148
S1264V1264VgtGgtT33B.1.1.10.00098
S1264V1264VgtGgtT33B.1.1.2160.002671
S1264V1264VgtGgtT23B.1.1.3260.003521
S1264V1264VgtGgtA13B.1.1.3260.001761
S1264V1264VgtGgtT33B.1.1.5210.016043
S1264V1264VgtGgtA33B.1.36.310.005254
S1264V1264VgtGgtT33B.1.4280.003061
S1264V1264VgtGgtT33B.1.4290.000071
S1264V1264VgtGgtC23C.36.30.001134
S1264V1264VgtGgtT13C.36.30.000567
S1264V1264VgtGgtT33P.1.10.000953
S1264V1264VgtGgtT33P.1.150.000697
S1264V1264VgtGgtT22AP.10.003003
S1264V1264VgtGgtT22AY.1110.000366
S1264V1264VgtGgtT22AY.1170.000169
S1264V1264VgtGgtT22AY.120.000632
S1264V1264VgtGgtA12AY.20.000356
S1264V1264VgtGgtT12AY.20.000356
S1264V1264VgtGgtT22AY.280.003781
S1264V1264VgtGgtT22AY.320.001065
S1264V1264VgtGgtT22AY.750.000112
S1264V1264VgtGgtT22AY.75.10.000361
S1264V1264VgtGgtT22AY.90.000135
S1264V1264VgtGgtT22B0.000256
S1264V1264VgtGgtT22B.1.1.4090.005666
S1264V1264VgtGgtT22B.1.1.5130.024691
S1264V1264VgtGgtT22B.1.258.140.001961
S1264V1264VgtGgtT22B.1.3960.001411
S1264V1264VgtGgtT22B.1.5950.000522
S1264V1264VgtGgtT22B.1.6090.000959
S1264V1264VgtGgtT22B.1.617.10.000258
S1264V1264VgtGgtT22B.1.6280.000705
S1264V1264VgtGgtT22B.30.001661
S1264V1264VgtGgtT22P.20.000373
S1264V1264VgtGgtT22Q.80.00033
S1264V1264VgtGgtT11A0.000387
S1264V1264VgtGgtA11A.2.5.10.004808
S1264V1264VgtGgtT11AY.116.10.000311
S1264V1264VgtGgtT11AY.3.10.000085
S1264V1264VgtGgtT11AY.360.000148
S1264V1264VgtGgtT11AY.370.000316
S1264V1264VgtGgtT11AY.39.10.00004
S1264V1264VgtGgtT11AY.39.1.10.000725
S1264V1264VgtGgtT11AY.46.10.001027
S1264V1264VgtGgtA11AY.46.20.000635
S1264V1264VgtGgtT11AY.490.003195
S1264V1264VgtGgtT11AY.5.30.000337
S1264V1264VgtGgtT11AY.620.000436
S1264V1264VgtGgtT11AY.650.000533
S1264V1264VgtGgtT11AY.690.000187
S1264V1264VgtGgtT11AY.70.000196
S1264V1264VgtGgtT11AY.700.000209
S1264V1264VgtGgtT11AY.780.001541
S1264V1264VgtGgtT11AY.80.000606
S1264V1264VgtGgtT11AY.850.000427
S1264V1264VgtGgtT11AY.9.2.10.001976
S1264V1264VgtGgtT11AY.920.000287
S1264V1264VgtGgtT11AY.980.000079
S1264V1264VgtGgtT11B.1.1.1170.009709
S1264V1264VgtGgtT11B.1.1.2070.001182
S1264V1264VgtGgtT11B.1.1.2140.000055
S1264V1264VgtGgtT11B.1.1.3120.001912
S1264V1264VgtGgtT11B.1.1.3330.001076
S1264V1264VgtGgtT11B.1.1.390.00051
S1264V1264VgtGgtT11B.1.1.4020.011111
S1264V1264VgtGgtA11B.1.1.4340.000349
S1264V1264VgtGgtT11B.1.1110.001175
S1264V1264VgtGgtC11B.1.1280.000635
S1264V1264VgtGgtT11B.1.1470.000756
S1264V1264VgtGgtT11B.1.1580.02381
S1264V1264VgtGgtT11B.1.177.320.00135
S1264V1264VgtGgtT11B.1.177.40.000211
S1264V1264VgtGgtT11B.1.177.70.000165
S1264V1264VgtGgtT11B.1.2410.000812
S1264V1264VgtGgtT11B.1.2470.014925
S1264V1264VgtGgtT11B.1.2520.006623
S1264V1264VgtGgtT11B.1.258.110.000396
S1264V1264VgtGgtT11B.1.2650.001271
S1264V1264VgtGgtT11B.1.3290.000608
S1264V1264VgtGgtT11B.1.351.20.000303
S1264V1264VgtGgtC11B.1.351.30.000876
S1264V1264VgtGgtT11B.1.36.290.000517
S1264V1264VgtGgtT11B.1.3670.000792
S1264V1264VgtGgtT11B.1.415.10.007576
S1264V1264VgtGgtT11B.1.4520.013699
S1264V1264VgtGgtT11B.1.5250.000113
S1264V1264VgtGgtT11B.1.5380.008065
S1264V1264VgtGgtT11B.1.5640.000426
S1264V1264VgtGgtT11B.1.6180.004032
S1264V1264VgtGgtT11B.1.6190.000871
S1264V1264VgtGgtT11B.1.6200.000946
S1264V1264VgtGgtT11B.1.621.10.000506
S1264V1264VgtGgtT11B.60.00091
S1264V1264VgtGgtT11P.1.120.000484
S1264V1264VgtGgtT11P.1.140.000048
S1264V1264VgtGgtT11P.1.160.000374
S1264V1264VgtGgtT11P.40.003802

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.